View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7474_low_3 (Length: 241)
Name: NF7474_low_3
Description: NF7474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7474_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 21434555 - 21434328
Alignment:
| Q |
1 |
gatgaaagtagaagatgactttttt-catatgcaattggtctcactcaa--gagtttcctagctcaagatataaattatctaagttgattgatgcagaaa |
97 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21434555 |
gatgaaagtagaagatgactttttttcatatgcaattggtcttactcaaaagagtttcctagctcaagatataaattatttaagttgattgatgcagaaa |
21434456 |
T |
|
| Q |
98 |
actttataaaatagaacggtcattttcataatatcatgnnnnnnntgttgaagtagagtaaattaacaaaaattttaagtatcataatacttttaagatc |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21434455 |
actttataaaatagaacggtcattttcataatttcatgaaaaaaatgttaaagtagagtaaattaacaaaacctttaagtatcataatacttttaagatc |
21434356 |
T |
|
| Q |
198 |
attttgtgttaaaatagacacactcaac |
225 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
21434355 |
attttgtgttaaaatagacacactcaac |
21434328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 11467811 - 11467934
Alignment:
| Q |
12 |
aagatgacttttttcatatgcaattggtctcactcaa----gagtttcctagctcaagatataaattatctaagttgattgatgcagaaaactttataaa |
107 |
Q |
| |
|
|||||| ||| ||||| |||||||||||| || |||| ||||||||| ||| ||||||||||| || |||| | | |||||||||||| |||||||| |
|
|
| T |
11467811 |
aagatgtcttctttcaaatgcaattggtcccattcaaaaacgagtttcctcgctaaagatataaatgatttaagcttactgatgcagaaaattttataaa |
11467910 |
T |
|
| Q |
108 |
atagaacggtcattttcataatat |
131 |
Q |
| |
|
| | || |||||||||||||||| |
|
|
| T |
11467911 |
acactacagtcattttcataatat |
11467934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University