View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7475_high_1 (Length: 569)

Name: NF7475_high_1
Description: NF7475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7475_high_1
NF7475_high_1
[»] scaffold0141 (1 HSPs)
scaffold0141 (1-219)||(6111-6329)
[»] chr1 (3 HSPs)
chr1 (285-569)||(44285603-44285886)
chr1 (285-569)||(44070127-44070410)
chr1 (70-239)||(49237921-49238090)
[»] chr3 (1 HSPs)
chr3 (475-569)||(16443750-16443843)


Alignment Details
Target: scaffold0141 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 6111 - 6329
Alignment:
Q  1 gggaattccttattggatagtcccatcccaatccaatacgaaaacgagtaatgagcccctttatgttgtgggcagcagagattagattcttattcttctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6111 gggaattccttattggatagtcccatcccaatccaatacgaaaacgagtaatgagcccctttatgttgtgggcagcagagattagattcttattcttctc 6210  T
Q  101 tttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcggagagccactctttggtccaataaagagacag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6211 tttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcggagagccactctttggtccaataaagagacag 6310  T
Q  201 atcagcatccatagaatct 219  Q
    |||||||||||||||||||    
T  6311 atcagcatccatagaatct 6329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 285 - 569
Target Start/End: Original strand, 44285603 - 44285886
Alignment:
Q  285 ttcttaccggaagttacatttaagaatatatccattaaaggaagattggacaatggggatctttacctaaaggtgcggagcgaagtctgcatttcttgct 384  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| || || ||||||||||||    
T  44285603 ttcttaccggaagttacattgaagaatatatccattaaaggaagattggccaatggggatctttacctaacgatgcggagcaaattcggcatttcttgct 44285702  T
Q  385 agttcttctcccagtctcggactcagccttttagccgattcgcacctttactctctgtctcaatcgagccggtcagatcaatagagaagtcaggcactcg 484  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||    
T  44285703 agttcttctcccaatctcggactcgaccttttagccgattcgcacctttactctctgtctcaatcaattcggtcagatcaatagagaagtcaggcactcg 44285802  T
Q  485 atagacttaaaggaaggttccgcccgtaaatttcttgatcaatgttaccgggaagcagcaacagagacagattgagtgctaaagc 569  Q
    || ||||||||||||| ||||| |||||||||  |||||||||||||||||||||||||||||||||  |||||||| |||||||    
T  44285803 attgacttaaaggaagattccg-ccgtaaattgattgatcaatgttaccgggaagcagcaacagagatggattgagtactaaagc 44285886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 285 - 569
Target Start/End: Complemental strand, 44070410 - 44070127
Alignment:
Q  285 ttcttaccggaagttacatttaagaatatatccattaaaggaagattggacaatggggatctttacctaaaggtgcggagcgaagtctgcatttcttgct 384  Q
    |||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| |   ||||||||||| || ||||||||||||    
T  44070410 ttcttaccagaagttacattgaagaatatatccattaaagcaagattggacaatggagatctttaccttacaatgcggagcgaattcggcatttcttgct 44070311  T
Q  385 agttcttctcccagtctcggactcagccttttagccgattcgcacctttactctctgtctcaatcgagccggtcagatcaatagagaagtcaggcactcg 484  Q
    ||||||||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  44070310 agttcttctcccaatctcggactcagccgtttagccggtttgcacctttactctctgtctcaatctagccggtcagatcaatagagaagtcaggcacttg 44070211  T
Q  485 atagacttaaaggaaggttccgcccgtaaatttcttgatcaatgttaccgggaagcagcaacagagacagattgagtgctaaagc 569  Q
    || ||||||||||||||||||| |||| ||||  |||||  ||||| || ||||||||||||||||||||||||||| |||||||    
T  44070210 attgacttaaaggaaggttccg-ccgttaattgattgattgatgttgccaggaagcagcaacagagacagattgagtactaaagc 44070127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 70 - 239
Target Start/End: Complemental strand, 49238090 - 49237921
Alignment:
Q  70 gggcagcagagattagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggcacgacaggcatcggaacgaactccgcgg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||    
T  49238090 gggcagcagagattagattcttattcttctctttgctttggtaccagccttgatatctcaatcttgcaaggtacgacatgcattggaacgaactccgcgg 49237991  T
Q  170 agagccactctttggtccaataaagagacagatcagcatccatagaatctatctagaaagaggcagtctg 239  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  49237990 agagccactctttggtccaataaagagacagatcatcatccatagaatctatctagaaataggcagtctg 49237921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 475 - 569
Target Start/End: Complemental strand, 16443843 - 16443750
Alignment:
Q  475 caggcactcgatagacttaaaggaaggttccgcccgtaaatttcttgatcaatgttaccgggaagcagcaacagagacagattgagtgctaaagc 569  Q
    |||||||| ||| ||||||||||||||||||||| || ||||  |||||  ||||| || ||||||||||||||||||||||||||| |||||||    
T  16443843 caggcacttgattgacttaaaggaaggttccgcc-gttaattgattgattgatgttgccaggaagcagcaacagagacagattgagtactaaagc 16443750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University