View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7475_high_2 (Length: 386)
Name: NF7475_high_2
Description: NF7475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7475_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 9333506 - 9333124
Alignment:
| Q |
1 |
aattcatgggatcgatttcttcttacttgcggccaaatgatcatcaactccagatgtaattaactgtgaaaatacctcattatagagtatgaaggattaa |
100 |
Q |
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| T |
9333506 |
aattcatggggtcgatttcttcgtacttgtggccaaatgatcatcaactccagatgtaattaactgtgaaaatacctcattatagagtatgaaggattaa |
9333407 |
T |
|
| Q |
101 |
cttaataattaatgttnnnnnnnnn----cttactaattttatgatcattttatgttctactcattttttcctgttttcttcatttgtgttataggtggg |
196 |
Q |
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| T |
9333406 |
cttactaattaaaggtaaaaaaaaaaaaacttactaattttatgatcattttatgttgtactcatttttttctgttttcttcatttgtgttataggtggg |
9333307 |
T |
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| Q |
197 |
tccttattt----------------gtttcaggaagaactgaagaagcatgggataaagaagtcacaagaaaaattaaggtattatttgtttctatttct |
280 |
Q |
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| T |
9333306 |
tccttatttttattcatcattttttgtttcaggaagaactgaagaagcatgggatacagaagtcacaaggaaaattaaggtattatttgtttctatttct |
9333207 |
T |
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| Q |
281 |
atgcatattatctgtttctaattccctgcatatgatt-ttttccaacatatggagacaacattggttttgtgtagccttcttt |
362 |
Q |
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| T |
9333206 |
atgcatgttatctgtttctaattccctacatatgatttttttccaacatatggagacaacattggtttggtgtagccttcttt |
9333124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 362
Target Start/End: Complemental strand, 22158428 - 22158065
Alignment:
| Q |
14 |
gatttcttcttacttgcggccaaatgatcatcaactccagatgtaattaactgtgaaaatacctcattatagagtatgaaggattaacttaataattaat |
113 |
Q |
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| T |
22158428 |
gatttcttcttacttgcggccaaatgatcatcaactccagatgtaattaaatgtggaaatacctcattatagagtatgaaggattaacttactaattaac |
22158329 |
T |
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| Q |
114 |
gttnnnnnnnnncttactaattttatgatcattttatgttctactcattttttcctgttttcttcatttgtgttataggtgggtccttat---------- |
203 |
Q |
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||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22158328 |
gttaaaaaaaa-cttactaattttattatcatattatgttctactcattttttcctgttttcttcatttgtgttataggtgggtccttatctttattcat |
22158230 |
T |
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| Q |
204 |
------ttgtttcaggaagaactgaagaagcatgggataaagaagtcacaagaaaaattaaggtattatttgtttctatttctatgcatattatctgttt |
297 |
Q |
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| T |
22158229 |
cattttttgtttcggaaagaactgaagaagcatgggatacagaagtcataaggaaaattaaggtattatttgtttctatttctattcatattatctcttt |
22158130 |
T |
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| Q |
298 |
ctaattccctgcatatgattttttccaacatatggagacaacattggttttgtgtagccttcttt |
362 |
Q |
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| T |
22158129 |
ctaattccctgcatatgattttttccaacatatggagaaaacatttgtttggtgtagccttcttt |
22158065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 126 - 359
Target Start/End: Original strand, 51861698 - 51861945
Alignment:
| Q |
126 |
cttactaattttatgatcattttatgttctactcatttttt-cctgttttcttcatttgtgttataggtgggtccttat----------------ttgtt |
208 |
Q |
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| T |
51861698 |
cttactaattttatgatcattttatgttctactcatttttttcctgttttcttcatttgtgttataggtgggtccttatctttattcatcattttttgtt |
51861797 |
T |
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| Q |
209 |
tcaggaagaactgaagaagcatgggataaagaagtcacaagaaaaattaaggtattatttgtttctatttctatgcatattatctgtttctaattccctg |
308 |
Q |
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| T |
51861798 |
ccaggaagaactgaacaagcatgggatacagaaatcataaggaaaattaaggtattatttgtttctatttctatgcatattatctgtttctaattcc--- |
51861894 |
T |
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| Q |
309 |
catatgattttttccaacatatggagacaacattggttttgtgtagccttc |
359 |
Q |
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| T |
51861895 |
catatgattttttccaacatatggagacaacgttggtttggtgtagccttc |
51861945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 51861558 - 51861669
Alignment:
| Q |
1 |
aattcatgggatcgatttcttcttacttgcggccaaatgatcatcaactccagatgtaattaactgtgaaaatacctcattatagagtatgaaggattaa |
100 |
Q |
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| T |
51861558 |
aattcatggagtcgatttcttcttacttgcggccaaatgatcatcaactccagatgtaattaaccgtggaaatacctcattatagagtatgaaggattaa |
51861657 |
T |
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| Q |
101 |
cttaataattaa |
112 |
Q |
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|||| ||||||| |
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| T |
51861658 |
cttactaattaa |
51861669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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