View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7475_high_4 (Length: 318)
Name: NF7475_high_4
Description: NF7475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7475_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 6 - 299
Target Start/End: Original strand, 15684807 - 15685100
Alignment:
| Q |
6 |
tttggtgttccaatatcagatcctagaatccaatttaaacataaacaataatacnnnnnnnnttcaagaaaaatataatatagatgagagaatgattatc |
105 |
Q |
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| T |
15684807 |
tttggtgttccaatatcagatcctagaatccaatttaaacataaacaataatacaaaaaaaattcaagaaaaatataatatagatgagaaaatgattatc |
15684906 |
T |
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| Q |
106 |
cattttactctcgtaatcaaacaccttgataccacttctcattctcgttgtgaggatattctgcgtagaatgcatacataagaaaaacataaaacaaata |
205 |
Q |
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| T |
15684907 |
cattttacactcgtaatcaaacaccttgataccacttctcattctcgttgtgaggatattctgcgtagaatgcatacataagaaaaacataaaacaaatt |
15685006 |
T |
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| Q |
206 |
tcggctgagatgtgttaagtcacttaaagtggtacgacaatagaaatgcataaaaacaaacttaaatataagtttaatttcaaaactatctatg |
299 |
Q |
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| T |
15685007 |
tcggctgagatgtgttaagtcacttaaagtggtacgacaatagaaatgcataaaaacaaactgaaatataagtttaatttcaaaactatctatg |
15685100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 263
Target Start/End: Original strand, 15693739 - 15693985
Alignment:
| Q |
16 |
caatatcagatcctagaatccaatttaaacataaacaataatacnnnnnnnnttcaagaaaaatataatatagatgagagaatgattatccattttactc |
115 |
Q |
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| T |
15693739 |
caatatcagatcctagaatccaatttaaatataaataataatacaaaaaactttcaagaactacataatataggtgaacaattgattatcctttttactc |
15693838 |
T |
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| Q |
116 |
tcgtaatcaaacaccttgataccacttctcattctcgttgtgaggatattctgcgtagaatgcatacataagaaaaacataaaacaaatatcggctgaga |
215 |
Q |
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| T |
15693839 |
ttgtaatcaaacaccttgatagtactcctcattctcgttgtgaggatattctgcatagaatgcatagataagaaaaaca-aagaataataatgggtgaga |
15693937 |
T |
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| Q |
216 |
tgtgttaagtcacttaaagtggtacgacaatagaaatgcataaaaaca |
263 |
Q |
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| T |
15693938 |
tatattatgtcacttaaagttatacaacaatagaaattcatagaaaca |
15693985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 16652539 - 16652498
Alignment:
| Q |
16 |
caatatcagatcctagaatccaatttaaacataaacaataat |
57 |
Q |
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| T |
16652539 |
caatatcagagcctagaactcaatttaaacataaacaataat |
16652498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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