View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7475_high_5 (Length: 261)

Name: NF7475_high_5
Description: NF7475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7475_high_5
NF7475_high_5
[»] chr8 (9 HSPs)
chr8 (130-243)||(37699651-37699764)
chr8 (1-87)||(37699522-37699608)
chr8 (1-83)||(9944205-9944287)
chr8 (1-87)||(37694999-37695085)
chr8 (1-84)||(37683116-37683199)
chr8 (1-83)||(34580866-34580947)
chr8 (1-83)||(39570786-39570867)
chr8 (1-77)||(34578125-34578200)
chr8 (161-223)||(37695132-37695194)
[»] chr1 (3 HSPs)
chr1 (1-84)||(7147393-7147476)
chr1 (1-83)||(10450665-10450747)
chr1 (1-84)||(31412165-31412247)
[»] chr5 (3 HSPs)
chr5 (1-85)||(26591317-26591401)
chr5 (1-85)||(26599434-26599518)
chr5 (1-83)||(12903196-12903278)
[»] scaffold0856 (1 HSPs)
scaffold0856 (1-84)||(2600-2683)
[»] chr7 (3 HSPs)
chr7 (1-83)||(23259706-23259788)
chr7 (1-83)||(39303968-39304050)
chr7 (14-82)||(23259935-23260003)
[»] chr3 (5 HSPs)
chr3 (1-83)||(33801029-33801111)
chr3 (1-83)||(39624635-39624717)
chr3 (1-83)||(39916475-39916557)
chr3 (1-83)||(39919010-39919092)
chr3 (1-61)||(26662910-26662970)


Alignment Details
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 37699651 - 37699764
Alignment:
Q  130 cagctaccattcgaatttcgaaagatgtttgttttctgccacttaataacgaacacgttgcctcaaaagagacaagaaaaacaatgacactgaattgtag 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37699651 cagctaccattcgaatttcgaaagatgtttgttttctgccacttaataacgaacacgttgcctcaaaagaaacaagaaaaacaatgacactgaattgtag 37699750  T
Q  230 agaaatgtttggaa 243  Q
    ||||||||||||||    
T  37699751 agaaatgtttggaa 37699764  T

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Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 37699522 - 37699608
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcaccccataaa 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37699522 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagtttgagcctctctcaccccataaa 37699608  T

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Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 9944287 - 9944205
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccca 83  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9944287 ggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtgatcctgaggtcgagagttcgagcctctctcacccca 9944205  T

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Target: chr8; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 37694999 - 37695085
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcaccccataaa 87  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37694999 ggtgatggcgcagttggctagcgcgtaggtctcatagcttctgagtgatcctgaggtcgagagttcgagcctctctcaccccataaa 37695085  T

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Target: chr8; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 37683116 - 37683199
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcaccccat 84  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37683116 ggtggtggtgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcaagcctctctcaccccat 37683199  T

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Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 34580947 - 34580866
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccca 83  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||    
T  34580947 ggtggtggcgcagttggctagcgcgtaggtctcatagcta-agagttatcctgaggtcgagagttcgagcctctctcacccca 34580866  T

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Target: chr8; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 39570786 - 39570867
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccca 83  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||    
T  39570786 ggtggtggcgcagttggctagcgcgtaggtctcatagcta-agagttatcctgaggtcgagagttcgagcctctctcacccca 39570867  T

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Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 34578200 - 34578125
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctc 77  Q
    ||||||||||||||||||||| | ||||||||||||||||  |||| ||||||||||||||||||||||||||||||    
T  34578200 ggtggtggcgcagttggctagtgtgtaggtctcatagcta-agagttatcctgaggtcgagagttcgagcctctctc 34578125  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 37695132 - 37695194
Alignment:
Q  161 ttttctgccacttaataacgaacacgttgcctcaaaagagacaagaaaaacaatgacactgaa 223  Q
    |||||||||||||||  ||||||||||||||||||| || |||| ||||| ||||||| ||||    
T  37695132 ttttctgccacttaaagacgaacacgttgcctcaaaggaaacaaaaaaaataatgacattgaa 37695194  T

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Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 7147476 - 7147393
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcaccccat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7147476 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcaccccat 7147393  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 10450665 - 10450747
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccca 83  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  10450665 ggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 10450747  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 31412247 - 31412165
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcaccccat 84  Q
    ||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||| ||||||||||||||||||    
T  31412247 ggtggtggcgcagttggctagcgcgtaggtctcatagcttct-agtaatcctgaggtcgagagtttgagcctctctcaccccat 31412165  T

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Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 26591317 - 26591401
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcaccccata 85  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  26591317 ggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccata 26591401  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 26599518 - 26599434
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcaccccata 85  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  26599518 ggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccata 26599434  T

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Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 12903196 - 12903278
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccca 83  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  12903196 ggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 12903278  T

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Target: scaffold0856 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 2683 - 2600
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcaccccat 84  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  2683 ggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagttatcctgaggtcgagagttcgagcctctctcaccccat 2600  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 23259706 - 23259788
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccca 83  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  23259706 ggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 23259788  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 39303968 - 39304050
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccca 83  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  39303968 ggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 39304050  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 23259935 - 23260003
Alignment:
Q  14 ttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccc 82  Q
    |||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||    
T  23259935 ttggctagcgcgtaggtctcatagcttctgagtaatcctgtggtcgagagttcgagcctctctcacccc 23260003  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 33801111 - 33801029
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccca 83  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  33801111 ggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 33801029  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 39624717 - 39624635
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccca 83  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  39624717 ggtggtggcgcagttggctagcgcgtaggtctcatagctgctgagtaatcctgaggtcgagagttcgagcctctctcacccca 39624635  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 39916557 - 39916475
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccca 83  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  39916557 ggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 39916475  T

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Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 39919092 - 39919010
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccca 83  Q
    |||||||||||||||||| || ||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||    
T  39919092 ggtggtggcgcagttggccagtgcgtaggtctcatagcttctgagtaatcctgaggtcgagagtttgagcctctctcacccca 39919010  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 26662910 - 26662970
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgag 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26662910 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgag 26662970  T

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