View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7475_low_1 (Length: 890)
Name: NF7475_low_1
Description: NF7475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7475_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 16 - 556
Target Start/End: Complemental strand, 32915123 - 32914584
Alignment:
| Q |
16 |
aacatgacaaaggtggttgtataaattattattgtttgttttattcctttgttcctttgtttgtttaggacggaatgaacactttgctgtgtctgctttc |
115 |
Q |
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| T |
32915123 |
aacatgacaaaggtggttgtataaattattattgtttgttttgttcctttgtttgtttgtttgtttaggacggaatgaacactttgctgtgtctgctttc |
32915024 |
T |
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| Q |
116 |
agattttgatgttgttatacaattggaaaccactatctcgcgtcattatgataatgatgagataactaaccattgtgttgctagtggaaaagtgtcacat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||| |
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| T |
32915023 |
agattttgatgttgttatacaattggaaaccactatctcgcgtcattatgataatgattagataactagccattgtgttgctagtggaaaagtgttacat |
32914924 |
T |
|
| Q |
216 |
gtggtttatggtctctagcgatctatgaagcacatgtatgtaatcctcggattaggcgtgtttagatgtcagatatgtaacatatctgacaccaatacat |
315 |
Q |
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||||||||| ||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
32914923 |
gtggtttattgtctctagcgatctatgaagcacatgtatctaatcttcggatcaggcgtgtttagatgtcagatatgtaacatatccgacaccaacacat |
32914824 |
T |
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| Q |
316 |
gattccaataaatcatgtcagttttttaataatgtcattttnnnnnnnntattttccgtgttaaattatttgtgtcgtgtctgggatccaattgaaagtc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32914823 |
gattccaataaatcatgtcagttttttaataatgtcattttttaaaaattattttctgtgtcaaattatttgtgtcgtgtctgggatccaattgaaagtc |
32914724 |
T |
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| Q |
416 |
attctaaattttgatcatgattggagttgtcaacttcaaatagaagttaagagtttctatatgtatgagaaggtcacctaattgacgtagattcaactaa |
515 |
Q |
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| T |
32914723 |
attctaaattttgatcatgattggagttgtcaacttcaaatagaagttaagagtttctatatatatgagaaggtcacctaattgacgtagattcaactaa |
32914624 |
T |
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| Q |
516 |
aacaagataaaacgaatgtaagtagatatttgagacactaa |
556 |
Q |
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| T |
32914623 |
aacaagataaaacg-atgtaagtagatatttgagacactaa |
32914584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 553 - 818
Target Start/End: Complemental strand, 32914227 - 32913938
Alignment:
| Q |
553 |
ctaatattactttgagacacatggtataaattaactcactcgttaagatgaataatatcaagagttttctatttacggagaatgacatcaagagttgcta |
652 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32914227 |
ctaatattactttgagacacatagtataaatcaactcactcgttaagatgaataatatcaagagttttctatttacggagaatgacatcaagagttgcta |
32914128 |
T |
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| Q |
653 |
-ggtttaaacaatttttaagcattggtccattgtagaccgtatgaaggacattatgttat----aaaata-------------------agggagaggtt |
728 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
32914127 |
cagtttaaacaatttttaagcattggtccattgtagaccgtatgaaggacattatgttatttagaaaataattataaaaaaataaaataagggagaggtt |
32914028 |
T |
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| Q |
729 |
ttttagtgtaaaaagtactttagccaaattcaggtgtggttagtaatatgtctgtgtgtgtagcagcagccataaattattgcaacataa |
818 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32914027 |
ttttagtgtaaaaagtactttagccaaattcaggtgtggttagtaatatgtctgtgtgtgtagcagcagccataaattattgcaacataa |
32913938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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