View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7475_low_12 (Length: 261)

Name: NF7475_low_12
Description: NF7475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7475_low_12
NF7475_low_12
[»] chr8 (9 HSPs)
chr8 (130-243)||(37699651-37699764)
chr8 (1-87)||(37699522-37699608)
chr8 (1-83)||(9944205-9944287)
chr8 (1-87)||(37694999-37695085)
chr8 (1-84)||(37683116-37683199)
chr8 (1-83)||(34580866-34580947)
chr8 (1-83)||(39570786-39570867)
chr8 (1-77)||(34578125-34578200)
chr8 (161-223)||(37695132-37695194)
[»] chr1 (3 HSPs)
chr1 (1-84)||(7147393-7147476)
chr1 (1-83)||(10450665-10450747)
chr1 (1-84)||(31412165-31412247)
[»] chr5 (3 HSPs)
chr5 (1-85)||(26591317-26591401)
chr5 (1-85)||(26599434-26599518)
chr5 (1-83)||(12903196-12903278)
[»] scaffold0856 (1 HSPs)
scaffold0856 (1-84)||(2600-2683)
[»] chr7 (3 HSPs)
chr7 (1-83)||(23259706-23259788)
chr7 (1-83)||(39303968-39304050)
chr7 (14-82)||(23259935-23260003)
[»] chr3 (5 HSPs)
chr3 (1-83)||(33801029-33801111)
chr3 (1-83)||(39624635-39624717)
chr3 (1-83)||(39916475-39916557)
chr3 (1-83)||(39919010-39919092)
chr3 (1-61)||(26662910-26662970)


Alignment Details
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 37699651 - 37699764
Alignment:
Q  130 cagctaccattcgaatttcgaaagatgtttgttttctgccacttaataacgaacacgttgcctcaaaagagacaagaaaaacaatgacactgaattgtag 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37699651 cagctaccattcgaatttcgaaagatgtttgttttctgccacttaataacgaacacgttgcctcaaaagaaacaagaaaaacaatgacactgaattgtag 37699750  T
Q  230 agaaatgtttggaa 243  Q
    ||||||||||||||    
T  37699751 agaaatgtttggaa 37699764  T

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Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 37699522 - 37699608
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcaccccataaa 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37699522 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagtttgagcctctctcaccccataaa 37699608  T

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Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 9944287 - 9944205
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccca 83  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9944287 ggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtgatcctgaggtcgagagttcgagcctctctcacccca 9944205  T

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Target: chr8; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 37694999 - 37695085
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcaccccataaa 87  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37694999 ggtgatggcgcagttggctagcgcgtaggtctcatagcttctgagtgatcctgaggtcgagagttcgagcctctctcaccccataaa 37695085  T

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Target: chr8; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 37683116 - 37683199
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcaccccat 84  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37683116 ggtggtggtgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcaagcctctctcaccccat 37683199  T

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Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 34580947 - 34580866
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccca 83  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||    
T  34580947 ggtggtggcgcagttggctagcgcgtaggtctcatagcta-agagttatcctgaggtcgagagttcgagcctctctcacccca 34580866  T

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Target: chr8; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 39570786 - 39570867
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccca 83  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||    
T  39570786 ggtggtggcgcagttggctagcgcgtaggtctcatagcta-agagttatcctgaggtcgagagttcgagcctctctcacccca 39570867  T

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Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 34578200 - 34578125
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctc 77  Q
    ||||||||||||||||||||| | ||||||||||||||||  |||| ||||||||||||||||||||||||||||||    
T  34578200 ggtggtggcgcagttggctagtgtgtaggtctcatagcta-agagttatcctgaggtcgagagttcgagcctctctc 34578125  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 37695132 - 37695194
Alignment:
Q  161 ttttctgccacttaataacgaacacgttgcctcaaaagagacaagaaaaacaatgacactgaa 223  Q
    |||||||||||||||  ||||||||||||||||||| || |||| ||||| ||||||| ||||    
T  37695132 ttttctgccacttaaagacgaacacgttgcctcaaaggaaacaaaaaaaataatgacattgaa 37695194  T

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Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 7147476 - 7147393
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcaccccat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7147476 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcaccccat 7147393  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 10450665 - 10450747
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccca 83  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  10450665 ggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 10450747  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 31412247 - 31412165
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcaccccat 84  Q
    ||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||| ||||||||||||||||||    
T  31412247 ggtggtggcgcagttggctagcgcgtaggtctcatagcttct-agtaatcctgaggtcgagagtttgagcctctctcaccccat 31412165  T

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Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 26591317 - 26591401
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcaccccata 85  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  26591317 ggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccata 26591401  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 26599518 - 26599434
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcaccccata 85  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  26599518 ggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccata 26599434  T

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Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 12903196 - 12903278
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccca 83  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  12903196 ggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 12903278  T

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Target: scaffold0856 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 2683 - 2600
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcaccccat 84  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  2683 ggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagttatcctgaggtcgagagttcgagcctctctcaccccat 2600  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 23259706 - 23259788
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccca 83  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  23259706 ggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 23259788  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 39303968 - 39304050
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccca 83  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  39303968 ggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 39304050  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 23259935 - 23260003
Alignment:
Q  14 ttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccc 82  Q
    |||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||    
T  23259935 ttggctagcgcgtaggtctcatagcttctgagtaatcctgtggtcgagagttcgagcctctctcacccc 23260003  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 33801111 - 33801029
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccca 83  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  33801111 ggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 33801029  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 39624717 - 39624635
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccca 83  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  39624717 ggtggtggcgcagttggctagcgcgtaggtctcatagctgctgagtaatcctgaggtcgagagttcgagcctctctcacccca 39624635  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 39916557 - 39916475
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccca 83  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  39916557 ggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 39916475  T

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Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 39919092 - 39919010
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccca 83  Q
    |||||||||||||||||| || ||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||    
T  39919092 ggtggtggcgcagttggccagtgcgtaggtctcatagcttctgagtaatcctgaggtcgagagtttgagcctctctcacccca 39919010  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 26662910 - 26662970
Alignment:
Q  1 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgag 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26662910 ggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgag 26662970  T

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