View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7475_low_14 (Length: 244)
Name: NF7475_low_14
Description: NF7475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7475_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 104 - 225
Target Start/End: Original strand, 470695 - 470815
Alignment:
| Q |
104 |
ttagtgcttctctctatagtattccctaccttgctacattctagggagaaagnnnnnnnnnntggcttttacttcttcactcaaaacaaccctaaggatc |
203 |
Q |
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| T |
470695 |
ttagtgcttctctctatagtattccctaccttgctacattctagggagaaagaaaaaaaaa-tggcttttacttcttcactcaaaacaaccctaaggatc |
470793 |
T |
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| Q |
204 |
tgacactcttcaatgttcatca |
225 |
Q |
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| T |
470794 |
tgacactcttcaatgttcatca |
470815 |
T |
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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 470625 - 470662
Alignment:
| Q |
40 |
actcaaagctatatacaaagaaaccaataaaagaacct |
77 |
Q |
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| T |
470625 |
actcaaagctatatacaaagaaaccaataaaagaacct |
470662 |
T |
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