View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7475_low_16 (Length: 232)
Name: NF7475_low_16
Description: NF7475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7475_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 33150199 - 33150410
Alignment:
| Q |
1 |
tattaatattgtacccgttttttcttcttttgttatgatcaatttgtttt-gggttgtctaacatccaccagcaaagaactagcaagtcgatgggccatt |
99 |
Q |
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| T |
33150199 |
tattaatattgtacccgtttttccttcttttattatgatcaatttgttttagggttgtctaacatccaccagcaaagaactagcaagtcgatgggccatt |
33150298 |
T |
|
| Q |
100 |
aaaattggtaattggaaaattgcatttcacaatttacactatgctaagaaatactatgaaatgacaaatttaacccgcagttaactatcatcggttaaaa |
199 |
Q |
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| T |
33150299 |
aaaattggtaattggaaaattgcatttcacaatttacacgatgctaagaaacactataaaatgacaaatttaacctgcagttaactatcatcggttaaaa |
33150398 |
T |
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| Q |
200 |
tatattgacagt |
211 |
Q |
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||||||| |||| |
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| T |
33150399 |
tatattggcagt |
33150410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 29927880 - 29927818
Alignment:
| Q |
113 |
ggaaaattgcatttcacaatttacactatgctaagaaatactatgaaatgacaaatttaaccc |
175 |
Q |
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| T |
29927880 |
ggaaaattgcctttcacacttcacacaatgctaaaaattaccatgaaatgataaatttaaccc |
29927818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 1699932 - 1699992
Alignment:
| Q |
114 |
gaaaattgcatttcacaatttacactatgctaagaaatactatgaaatgacaaatttaacc |
174 |
Q |
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|||||||| ||||||| || |||| ||||||||||| || ||||||| |||||||||||| |
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| T |
1699932 |
gaaaattgtctttcacacttcacacaatgctaagaaacaccatgaaataacaaatttaacc |
1699992 |
T |
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