View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7475_low_17 (Length: 227)
Name: NF7475_low_17
Description: NF7475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7475_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 12050222 - 12050430
Alignment:
| Q |
1 |
attagtgtttaaaagacagaatgaacttgaacaaatttacaaaggagatcacatggatatggatagtgaagctctagacagattctgatcaatctcatag |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12050222 |
attagtgtttaaaagacacaatgaacttgaacaaatttacaaaggagatcacatggatatggatagtgaagctgtagacagattctgatcaatctcatag |
12050321 |
T |
|
| Q |
101 |
aatctggtacataaacaatgcctaaggtattattgaannnnnnnncttgatatttcaacatggctacttataaatgtatctgtagattccattttattcc |
200 |
Q |
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||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12050322 |
aatctggtacataaataatgcctaaggtgttattgaattttttttcttgatatttcaacatggctacttataaatgtatctgtagattccattttattcc |
12050421 |
T |
|
| Q |
201 |
ctcttaaat |
209 |
Q |
| |
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||||||||| |
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| T |
12050422 |
ctcttaaat |
12050430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 15580105 - 15579896
Alignment:
| Q |
1 |
attagtgtttaaaagacagaatgaacttgaacaaatttacaaaggagatcacatggatatggatagtgaagct-ctagacagattctgatcaatctcata |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||| ||||| ||||||||||||||||||||||||| ||||||||| ||||| || |||| | |
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| T |
15580105 |
attagtgtttaaaagacagaatgaacttgaagaaatatacagaggagttcacatggatatggatagtgaagctgctagacagactctgaccagcctcaca |
15580006 |
T |
|
| Q |
100 |
gaatctggtacat-aaacaatgcctaaggtattattgaannnnnnnncttgatatttcaacatggctacttataaatgtatctgtagattccattttatt |
198 |
Q |
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||||||||||||| ||| |||||||| || | |||||| ||||| ||||||| ||||||||||||||| || || ||||||||||||| || |
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| T |
15580005 |
gaatctggtacataaaattatgcctaaagtgtcattgaa-tttttttcttgaaatttcaatgtggctacttataaatttacctttagattccattttctt |
15579907 |
T |
|
| Q |
199 |
ccctcttaaat |
209 |
Q |
| |
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|||||| |||| |
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| T |
15579906 |
ccctctgaaat |
15579896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 8334660 - 8334748
Alignment:
| Q |
1 |
attagtgtttaaaagacagaatgaacttgaacaaatttacaaaggagatcacatggatatggatagtgaagct-ctagacagattctga |
88 |
Q |
| |
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||||| ||||||||||||||||||||||||| ||||| | | ||||| ||||||||||||||| | ||||| ||||||||||||||| |
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| T |
8334660 |
attagcgtttaaaagacagaatgaacttgaagaaattcatagaggagcacacatggatatggatgctaaagctgctagacagattctga |
8334748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 11908771 - 11908563
Alignment:
| Q |
1 |
attagtgtttaaaagacagaatgaacttgaacaaatttacaaaggagatcacatggatatggatagtgaagct-ctagacagattctgatcaatctcata |
99 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| ||||||||| ||||| ||| ||||||||||||||||||||| |||||||||||||| || |||||| |
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| T |
11908771 |
attagtgtttaaaagatagaatgtacttgaagaaatttacagaggagttcatatggatatggatagtgaagctgttagacagattctgaccagcctcata |
11908672 |
T |
|
| Q |
100 |
gaatctggtacataaacaatgcctaaggtattattgaannnnnnnncttgatatttcaacatggctacttataaatgtatctgtagattccattttattc |
199 |
Q |
| |
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|||||||||||||||||||||||| | || || |||| ||||| |||||||| |||||||||||||||||| || ||||||||||||||||| |
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| T |
11908671 |
gaatctggtacataaacaatgcctgaagtgttgctgaa-tttttttcttgaaatttcaacgtggctacttataaatgtacctttagattccattttattc |
11908573 |
T |
|
| Q |
200 |
cctcttaaat |
209 |
Q |
| |
|
|||||||||| |
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|
| T |
11908572 |
cctcttaaat |
11908563 |
T |
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