View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7475_low_18 (Length: 227)
Name: NF7475_low_18
Description: NF7475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7475_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 2 - 209
Target Start/End: Original strand, 7754666 - 7754873
Alignment:
| Q |
2 |
aaccacagtactaacactagtgattcaatcttacaactaataatttgaaaataattaaggaggcaatatacgagaatgatgaagttattaaaatacccct |
101 |
Q |
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| T |
7754666 |
aaccacagtactaacactagtgattcaatcttacaactaataatttgaaaataattaaggaggcaatatacgagaatgataaagttattaaaatacccct |
7754765 |
T |
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| Q |
102 |
ttgcgtccgatgtattctgccatttgaccactagcaatggctcccaccatggctccaacattggataaagatccaaatagagaaaactgattccaacaca |
201 |
Q |
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| T |
7754766 |
ttgcgtccgatgtattctgccatttgaccactagcaatggctcccaccatggctccaacattggataaagatccaaatagagaaaactaattccaacaca |
7754865 |
T |
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| Q |
202 |
gtataaaa |
209 |
Q |
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|||||||| |
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| T |
7754866 |
gtataaaa |
7754873 |
T |
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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 32928219 - 32928125
Alignment:
| Q |
95 |
tacccctttgcgtccgatgtattctgccatttgaccactagcaatggctcccaccatggctccaacattggataaagatccaaatagagaaaact |
189 |
Q |
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|||||||||||| |||| |||||||| || |||||||| || || ||||||||||| || || |||||||||||||||||||| |||||||||| |
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| T |
32928219 |
tacccctttgcgcccgacatattctgctatctgaccacttgctatagctcccaccatagcacccacattggataaagatccaaacagagaaaact |
32928125 |
T |
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