View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7475_low_3 (Length: 561)
Name: NF7475_low_3
Description: NF7475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7475_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 8 - 543
Target Start/End: Complemental strand, 54848690 - 54848136
Alignment:
| Q |
8 |
cgaagaatatattgttgagaaggataaatttnnnnnnnttgatttcatttttctatattgaaactgtacaatgtatataaaccgcatgaatgcggaagtg |
107 |
Q |
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| T |
54848690 |
cgaagattatattgttgagaaggataaatttaaaaaaattgatttcatttttctatattgaaactgtacaatgtatataaaccgcatgaatgcggaagtg |
54848591 |
T |
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| Q |
108 |
ctagaaatattaaacaataattaacttatatatacaacatgaggaagaaagcagagtaatgaatgattctaaacacgtgtttggaatgacactgagattg |
207 |
Q |
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| T |
54848590 |
ctagaaatattaaacaataattaacttatatatacaacatgaggaagaaagcagagtaatgaatgattctaaacacgtgtttggaatgacactgagattg |
54848491 |
T |
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| Q |
208 |
tcagaattatggtgaacataataattttgacaaaaactacgttttagagcttgaataa-------------------atttgtcaatcaaggtcaatcca |
288 |
Q |
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| T |
54848490 |
tcagaattatggtgaacataataattttgacaaaaactacgttttagagcttgaataagataacagtgtcacgctaaatttgtcaatcaaggtcaatcca |
54848391 |
T |
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| Q |
289 |
aacatgtactgattcttgtgaacatccaaataattttaagcattgacgtatgaggtagttaattgagtgcaacttggcgcccttcgacaatgatatggat |
388 |
Q |
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| T |
54848390 |
aacatgtactgattcttgtgaacatccaaataattttaagcattgacgtatgaggtagttaattgagtgcaacttggcgcccttcgacaatgatatggat |
54848291 |
T |
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| Q |
389 |
taaggttgatgaattcctttctatgagaatgtttctttcttttctttgcatcaggatgttttggtttcttcaaatcctcaaccgaatgtacatcttccat |
488 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54848290 |
taaggttgatgaattccttcctatgagaatgtttctttcttttctttgcatcaggatgttttggtttcttcaaatcctcaaccgaatgtacatcttccat |
54848191 |
T |
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| Q |
489 |
acaaacaaatgatcttgctttccctgagtaataccttgataatcctcctctcctg |
543 |
Q |
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| T |
54848190 |
acaaacaaatgatcttgctttccctgagtaataccttgataatcctcctctcctg |
54848136 |
T |
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