View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7475_low_7 (Length: 337)
Name: NF7475_low_7
Description: NF7475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7475_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 11741607 - 11741301
Alignment:
| Q |
13 |
aatatcaagcatatagatagcctttgcaaagtcctctggctttggaaagtgtcttctgaaataactttgattttctgctaagtgtcttctgaaagaagtt |
112 |
Q |
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| T |
11741607 |
aatatcaagcatgtagatagcatttgcaaagtcctctggctttggaaagtgtcttctgaaataactttgattttctgctaagtgtcttctgaaagaagtt |
11741508 |
T |
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| Q |
113 |
ttgttttctgctatgccaatcaaaaccatacatttttaatgaaatttaataaatttgaaaatataattaagctatctatatcaatttttgtgctgcattt |
212 |
Q |
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| T |
11741507 |
ttattttctgctatgccaatcaaaaccatacatttttaatgaaatttaataaatttgaaaatataattaagctatctatatcagtttttgtgctgcattg |
11741408 |
T |
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| Q |
213 |
gtaaggagattattaaaccttgggtgaagaacttggcggtgcgcgctttgaattgaataaactgtgctatttggatttcaagagtgaaaggcgagccacc |
312 |
Q |
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| T |
11741407 |
gtaaggagattattaaaccttgggtgaagaacttggcggtgcgcgctttgaactgaataaactgtgctatttgaatttcaagagtgaaaggcgagccacc |
11741308 |
T |
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| Q |
313 |
atcgaag |
319 |
Q |
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| T |
11741307 |
atcgaag |
11741301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 225 - 320
Target Start/End: Complemental strand, 11737149 - 11737054
Alignment:
| Q |
225 |
ttaaaccttgggtgaagaacttggcggtgcgcgctttgaattgaataaactgtgctatttggatttcaagagtgaaaggcgagccaccatcgaagt |
320 |
Q |
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| T |
11737149 |
ttaaaccttgtgtgaagaacttcccggtgcgtgatttgaactggttaaactgttctacttggatttcaagggtgaaaggcgtgccaccatcaaagt |
11737054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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