View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7476_high_3 (Length: 301)
Name: NF7476_high_3
Description: NF7476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7476_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 30594580 - 30594314
Alignment:
| Q |
18 |
gaaaagtgggctacttggcttggtggattcaaagcagattctgttgtttattgttgttttggaagtgaatgcactttaataccaaaccaatttcaagaat |
117 |
Q |
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| T |
30594580 |
gaaaagtgggctacttggcttggtggattcaaagcagattctgttgtttattgttgttttggaagtgaatgcactttaataccaaaccaatttcaagaat |
30594481 |
T |
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| Q |
118 |
taattcttggtcttgagttatctggtatgccgttttttgcagctttgaaacctccttttggttttgcaacaattgaagaagcattaccagaaggattggc |
217 |
Q |
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| T |
30594480 |
taattcttggtcttgagttatctggtatgccgttttttgcagctttgaaacctccttttggttttgcaacaattgaagaagcattaccagaaggattggc |
30594381 |
T |
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| Q |
218 |
agagaggattaaaggaagaggtgttgtttatggtggttgggttcaacaacaattgattttggaacac |
284 |
Q |
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| T |
30594380 |
agagaggattaaaggaagaggtgttgtttatggtggttgggttcaacaacaattgattttggaacac |
30594314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 30611928 - 30611663
Alignment:
| Q |
18 |
gaaaagtgggctacttggcttggtggattcaaagcagattctgttgtttattgttgttttggaagtgaatgcactttaataccaaaccaatttcaagaat |
117 |
Q |
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| T |
30611928 |
gaaaattgggctacttggcttggtagattcaaaacggattcagttgtttattgttgttttggaagtgaatgtgttttaaagccaaatacatttcaagaac |
30611829 |
T |
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| Q |
118 |
taattcttggtcttgagttatctggtatgccgttttttgcagctttgaaacctccttttggttttgcaacaattgaagaagcattaccagaaggattggc |
217 |
Q |
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| T |
30611828 |
tgatgcttggtcttgagttgactggtatgccattttttgcagctttgaaacctccttttggtttcgaaacaattgaagaagcattgccagaagggttttc |
30611729 |
T |
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| Q |
218 |
agagaggattaaaggaagaggtgttgtttatggtggttgggttcaacaacaattgattttggaaca |
283 |
Q |
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| T |
30611728 |
agaaagggttgaaggaagaggtgttgtttatggtggttgggttcaacaacaattgattttggaaca |
30611663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 283
Target Start/End: Complemental strand, 35018580 - 35018484
Alignment:
| Q |
187 |
caattgaagaagcattaccagaaggattggcagagaggattaaaggaagaggtgttgtttatggtggttgggttcaacaacaattgattttggaaca |
283 |
Q |
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| T |
35018580 |
caattgaagaagctttaccagaagggttcaatgaaaggattaaaggaaaagggattgtgtatggaagttggattcaacaacaattgattttagaaca |
35018484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 284
Target Start/End: Original strand, 35034082 - 35034177
Alignment:
| Q |
189 |
attgaagaagcattaccagaaggattggcagagaggattaaaggaagaggtgttgtttatggtggttgggttcaacaacaattgattttggaacac |
284 |
Q |
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||||||||||| ||||||||||| || || ||||||||||||| ||| |||||||||| ||||| |||||||||| |||||| |||||||| |
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| T |
35034082 |
attgaagaagctttaccagaagggttcaatgaaaggattaaaggaaaagggattgtttatggaagttggattcaacaacagttgattctggaacac |
35034177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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