View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7476_high_5 (Length: 256)
Name: NF7476_high_5
Description: NF7476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7476_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 6986059 - 6985820
Alignment:
| Q |
1 |
cctctcaggataatcaacaattatctcaaacaatttggctatccttaaatcttgtagtgtttcgtaagcaaaatattccagccgcaacttccatctgaca |
100 |
Q |
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| T |
6986059 |
cctctcaggataatcaacaattatctcaaacaatttggctatccttaaatcttgtagtgtttcgtaagcaaaatattccagccgcaacttccatctgaca |
6985960 |
T |
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| Q |
101 |
agactttcagagggagtatcaattccaggacaacatgatgatggtgtcggcgctaaaggtgatttgagacctgatgaagtaatttcgtagctaacagagt |
200 |
Q |
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| T |
6985959 |
agactttcagagggagtatcaattccaggacaacatgatgatggtgtcggcgctaaaggtgatttgagacctgatgaagtaatttcgtagctaacagagt |
6985860 |
T |
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| Q |
201 |
caccaagataaacaagaagggcatgtacaaactggagagg |
240 |
Q |
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| T |
6985859 |
cgccaagataaacaagaagggcatggacaaactggagagg |
6985820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 31899551 - 31899783
Alignment:
| Q |
8 |
ggataatcaacaattatctcaaacaatttggctatccttaaatcttgtagtgtttcgtaagcaaaatattccagccgcaacttccatctgacaagacttt |
107 |
Q |
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| T |
31899551 |
ggataatcaacgattatctcaaataatttggctatccttaaatcttgcagtgtttcataagcaaaatattccatccgcaacttccatcggacaagacttt |
31899650 |
T |
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| Q |
108 |
cagagggagtatcaattccaggacaacatgatgatggtgtcggcgctaaaggtgatttgagacctgatgaagtaatttcgtagctaacagagtcaccaag |
207 |
Q |
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| T |
31899651 |
cagagggagtatcaattccaggacagcatgacgatgattttggggctaaaggtgatttgagacctgatgaagtactttcgtagctaacagagtcaccaag |
31899750 |
T |
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| Q |
208 |
ataaacaagaagggcatgtacaaactggagagg |
240 |
Q |
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| T |
31899751 |
atagacaagaagggcatggagaaactggagagg |
31899783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 31963348 - 31963580
Alignment:
| Q |
8 |
ggataatcaacaattatctcaaacaatttggctatccttaaatcttgtagtgtttcgtaagcaaaatattccagccgcaacttccatctgacaagacttt |
107 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
31963348 |
ggataatcaacgattatctcaaataatttggctatccttaaatcttgcagtgtttcataagcaaaatattccagtcgcaacttccatcggacaagacttt |
31963447 |
T |
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| Q |
108 |
cagagggagtatcaattccaggacaacatgatgatggtgtcggcgctaaaggtgatttgagacctgatgaagtaatttcgtagctaacagagtcaccaag |
207 |
Q |
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||||||||||||||||||| ||||| ||||| |||| | | || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31963448 |
cagagggagtatcaattccgggacagcatgacgatgattttggggctaaaggtgatttgagacctgatgaagtactttcgtagctaacagagtcaccaag |
31963547 |
T |
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| Q |
208 |
ataaacaagaagggcatgtacaaactggagagg |
240 |
Q |
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||| |||||||||||||| | |||||||||||| |
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| T |
31963548 |
atagacaagaagggcatggagaaactggagagg |
31963580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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