View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7476_low_1 (Length: 445)
Name: NF7476_low_1
Description: NF7476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7476_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 429
Target Start/End: Original strand, 13347678 - 13348107
Alignment:
| Q |
16 |
acatcaggaagaataaatattactccattagcaaaaaatagtaatgctagcaaaaatctctattttggatttaaattccctgcatttgggaatcctaaaa |
115 |
Q |
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| T |
13347678 |
acatcaggaagaataaatattactccattagcaaaaaatagtaatgctagcaaaaatctctattttggatttaaattccctgcatttggaaatcctaaaa |
13347777 |
T |
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| Q |
116 |
ttcctgtattagtgctttttggaccatctgactgaacagttcacatttcaagcaagtactttctatctgattaaccctctcttgcaaccctcattatttt |
215 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||| |
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| T |
13347778 |
ttccggtattagtgctttttggaccatctgactgaacagttcacatttcaagcaagtaatttctatttgattaaccctctcttgcaaccctcattgtttt |
13347877 |
T |
|
| Q |
216 |
ggt----------------gacacaagtaatttctatcaccatgattgtcggtgactaaaacacgatgcgagaaatcacaatgattgtcggtgactaaac |
299 |
Q |
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||| ||||||||||||||||||||| | ||||||||||| |||||||| |||| ||||||||||||||||||| ||||||||||| |
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| T |
13347878 |
ggtgacacaagcattgtgggacacaagtaatttctatcacaacgattgtcggtggctaaaacatgatgtgagaaatcacaatgattgttggtgactaaac |
13347977 |
T |
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| Q |
300 |
tagcatacacatatggtgtagataactttttaagtaacatctaatggaatcactctatttctctacgttatacaaattttttgaaatgcaattacaaaag |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13347978 |
tagcatacacatatggtgtagataactttttaagtaacatctaatggaattactctatttctctatgttatacaaattttttgaaatgcaattacaaaag |
13348077 |
T |
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| Q |
400 |
tgaaatgatatcgcaaaatattgaacttta |
429 |
Q |
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||||| ||||| |||||||||||||||||| |
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| T |
13348078 |
tgaaaagatatagcaaaatattgaacttta |
13348107 |
T |
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