View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7476_low_4 (Length: 285)
Name: NF7476_low_4
Description: NF7476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7476_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 6986108 - 6986382
Alignment:
| Q |
1 |
aaaattaattaattccttcttatatgtcttattaaattgaatggtattgtcaaccgcattgacggaaacgtgtttagtgggtatagcttcctgcagtagt |
100 |
Q |
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| T |
6986108 |
aaaattaattaattccttcttttatgtcttattaaattgaatggtattgtcaaccgcattgacggaaacgtgtttagtgggtatagcttcctgcagtagt |
6986207 |
T |
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| Q |
101 |
aggagaatgacgggttttctaggctttgattagtgctttataaaattgatgttttggttgagtaaattttgaactccgacaataagcactaacttaacaa |
200 |
Q |
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| T |
6986208 |
aggagaatgacgggttttctaggctttgattagtgctttgtaaaattgatgttttggttgagtaaattttgaactccgacaataagcaccaacttaacaa |
6986307 |
T |
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| Q |
201 |
acaaattcttcgccagatcatatctcatttgtttatgagttgtcttctgaacatttatatttccttttatctctg |
275 |
Q |
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| T |
6986308 |
acaaattctttgctagatcatatctcatttttttatgagttgtcttctgaacatttatatttccttttatctctg |
6986382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 31899472 - 31899382
Alignment:
| Q |
23 |
tatgtcttattaaattgaatggtattgtcaaccgcattgacggaaacgtg--------tttagtgggtatagcttcctgcagtagtaggag |
105 |
Q |
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| T |
31899472 |
tatgtcttattaaattgaatggcattgtcaaccgcattgacagaaacatgattagtcacttagtgggtatagcttcctgcagtagttggag |
31899382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 275
Target Start/End: Complemental strand, 31899250 - 31899139
Alignment:
| Q |
158 |
ttgagtaaattttgaactccgacaataagcactaacttaacaaacaaattcttcgccagatcatatctcatttgtttatgagttgtcttctgaacattta |
257 |
Q |
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| T |
31899250 |
ttgagtatattttgaactccaacaataagca-----ttaacaaactaattctctggtagatcacatctcatttgtttatgcattgttttctgagcattta |
31899156 |
T |
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| Q |
258 |
tatttccttttatctctg |
275 |
Q |
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| T |
31899155 |
t-tttccttttctctctg |
31899139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 31963292 - 31963214
Alignment:
| Q |
1 |
aaaattaattaatt-ccttcttatatgtcttattaaattgaatggtattgtcaaccgcattgacggaaacgtgtttagt |
78 |
Q |
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||||||||||| || |||||| |||||||||||||| ||||||| |||||| |||| |||||| ||||| |||||||| |
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| T |
31963292 |
aaaattaattagttaccttctattatgtcttattaaactgaatggcattgtccaccggattgacagaaacatgtttagt |
31963214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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