View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7477_high_11 (Length: 309)
Name: NF7477_high_11
Description: NF7477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7477_high_11 |
 | |
|
| [»] scaffold0041 (2 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: scaffold0041 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 309
Target Start/End: Complemental strand, 87840 - 87544
Alignment:
| Q |
13 |
aatatcctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
87840 |
aatatcctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatca |
87741 |
T |
|
| Q |
113 |
gattgtgtcaaggttttcgcaaaagattgatgtttatccttagtttcagacacgttggtgccagcaacaccgtcattatcaaaactaacctcgttaatat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
87740 |
gattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatat |
87641 |
T |
|
| Q |
213 |
tcataggaacaagcctgagttttgcatagacttcatccgtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaat |
309 |
Q |
| |
|
||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
87640 |
tcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaat |
87544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 95851 - 95560
Alignment:
| Q |
18 |
cctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattg |
117 |
Q |
| |
|
|||||| |||||||||| |||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
95851 |
cctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattg |
95752 |
T |
|
| Q |
118 |
tgtcaaggttttcgcaaaagattgatgtttatccttagtttcagacacgttggtgccagcaacaccgtcattatcaaaactaacctcgttaatattcata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
95751 |
tgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcata |
95652 |
T |
|
| Q |
218 |
ggaacaagcctgagttttgcatagacttcatccgtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaat |
309 |
Q |
| |
|
|| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
95651 |
gggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatatcttcaactctacatggaatgaaagatggaat |
95560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 309
Target Start/End: Original strand, 40878443 - 40878739
Alignment:
| Q |
13 |
aatatcctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40878443 |
aatatcctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatca |
40878542 |
T |
|
| Q |
113 |
gattgtgtcaaggttttcgcaaaagattgatgtttatccttagtttcagacacgttggtgccagcaacaccgtcattatcaaaactaacctcgttaatat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
40878543 |
gattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatat |
40878642 |
T |
|
| Q |
213 |
tcataggaacaagcctgagttttgcatagacttcatccgtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaat |
309 |
Q |
| |
|
||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40878643 |
tcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaat |
40878739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 40870431 - 40870722
Alignment:
| Q |
18 |
cctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattg |
117 |
Q |
| |
|
|||||| |||||||||| |||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40870431 |
cctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattg |
40870530 |
T |
|
| Q |
118 |
tgtcaaggttttcgcaaaagattgatgtttatccttagtttcagacacgttggtgccagcaacaccgtcattatcaaaactaacctcgttaatattcata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
40870531 |
tgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattatcaaaactaacctggttaatattcata |
40870630 |
T |
|
| Q |
218 |
ggaacaagcctgagttttgcatagacttcatccgtctcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaat |
309 |
Q |
| |
|
|| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
40870631 |
gggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatatcttcaactctacatggaatgaaagatggaat |
40870722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 40352688 - 40352777
Alignment:
| Q |
50 |
cgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat |
139 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||||| ||| || || |||||||||||||||||||| |||||||| || || ||||||||| |
|
|
| T |
40352688 |
cgaggaaaaatcgtttcagcacagtatctaggaacagagaaccctccaccattgtttgcatcagactgtgtcaaagtctttgcaaaagat |
40352777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 28346848 - 28346744
Alignment:
| Q |
19 |
ctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgt |
118 |
Q |
| |
|
||||||||| || | ||| | ||| ||||||||||| |||| ||| || |||||||| |||||| |||||| || ||||||||||| ||||||||||| |
|
|
| T |
28346848 |
ctgaagagggggatcagccgcataatccaaacgagggaaaatcgtctcggcacaatacctaggaacagaaaaacctccaccattgttagcatcagattga |
28346749 |
T |
|
| Q |
119 |
gtcaa |
123 |
Q |
| |
|
||||| |
|
|
| T |
28346748 |
gtcaa |
28346744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 138
Target Start/End: Complemental strand, 42730243 - 42730140
Alignment:
| Q |
35 |
gctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaa |
134 |
Q |
| |
|
|||||||| ||||| | |||||||| || || ||||| ||||||||| |||||| || ||||| |||||||||||||||||||| || || || |||| |
|
|
| T |
42730243 |
gctgaataatccaacctaggaaaaatagtctcagcacagtatctaggaacagaaaaacctccaccgttgtttgcatcagattgtgttaatgtctttgcaa |
42730144 |
T |
|
| Q |
135 |
aaga |
138 |
Q |
| |
|
|||| |
|
|
| T |
42730143 |
aaga |
42730140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 21715696 - 21715642
Alignment:
| Q |
85 |
agaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat |
139 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| ||||| || || ||||||||| |
|
|
| T |
21715696 |
agaaaaccccccaccattgtttgcatcagattgagtcaaagtcttagcaaaagat |
21715642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University