View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7477_high_14 (Length: 282)

Name: NF7477_high_14
Description: NF7477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7477_high_14
NF7477_high_14
[»] chr8 (5 HSPs)
chr8 (1-164)||(43239907-43240071)
chr8 (110-164)||(79466-79520)
chr8 (86-164)||(34336211-34336295)
chr8 (6-66)||(38552011-38552072)
chr8 (132-164)||(41865503-41865535)
[»] chr7 (4 HSPs)
chr7 (88-160)||(13044333-13044406)
chr7 (86-164)||(38505160-38505244)
chr7 (6-66)||(33979277-33979338)
chr7 (86-114)||(32851670-32851698)
[»] chr5 (5 HSPs)
chr5 (6-66)||(30775253-30775314)
chr5 (118-164)||(14569904-14569950)
chr5 (6-67)||(16187211-16187273)
chr5 (6-66)||(35853964-35854025)
chr5 (132-164)||(10955557-10955589)
[»] chr1 (7 HSPs)
chr1 (88-164)||(41817123-41817199)
chr1 (1-66)||(32133914-32133980)
chr1 (7-65)||(48514879-48514938)
chr1 (122-164)||(69912-69954)
chr1 (123-164)||(14439751-14439792)
chr1 (6-66)||(39027167-39027228)
chr1 (6-42)||(28192093-28192129)
[»] chr3 (9 HSPs)
chr3 (109-164)||(47359495-47359550)
chr3 (110-164)||(27197428-27197482)
chr3 (110-164)||(34280668-34280722)
chr3 (85-164)||(517452-517532)
chr3 (109-164)||(33900560-33900615)
chr3 (6-66)||(38694446-38694507)
chr3 (135-164)||(49183866-49183895)
chr3 (135-164)||(50534978-50535007)
chr3 (116-164)||(3537387-3537435)
[»] chr2 (2 HSPs)
chr2 (91-164)||(34757787-34757856)
chr2 (116-163)||(41099967-41100014)
[»] chr6 (2 HSPs)
chr6 (86-164)||(9104767-9104846)
chr6 (110-164)||(24849395-24849449)
[»] scaffold0263 (1 HSPs)
scaffold0263 (92-163)||(5807-5884)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 43240071 - 43239907
Alignment:
Q  1 aatgagtagggtaaaactccgctttcatggatccggacttggatctaggaattacccgcaaatttaactaggcatgggtacggggtaagactttgtttgg 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  43240071 aatgagtagggtaaaaccccgctttcatggatccggacttggatctaggaattacccgcaaatttaattaggcatgggtacggggtaagactttgtttga 43239972  T
Q  101 gagtttgga-gggaatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 164  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43239971 gagtttggaggggaatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 43239907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 79466 - 79520
Alignment:
Q  110 gggaatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 164  Q
    ||||| |||||| ||||| |  || ||||||||||||||||||||||||||||||    
T  79466 gggaagggaaggctttgaggagtggaaaatatgagggaaaatggagaaatctttc 79520  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 164
Target Start/End: Complemental strand, 34336295 - 34336211
Alignment:
Q  86 taagactttgtttgggagtttggaggg------aatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 164  Q
    |||| ||||||||| ||||||||||||      ||||||||  ||||| || || ||||||||||| ||||||||||||||||||    
T  34336295 taaggctttgtttgtgagtttggaggggaggagaatggaagactttgaggggtggaaaatatgaggaaaaatggagaaatctttc 34336211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 38552072 - 38552011
Alignment:
Q  6 gtagggtaaaactccgctttcatggatccggacttggatctagg-aattacccgcaaattta 66  Q
    |||||||||||| |||||||||||| ||||| ||||| | | || |||||||||||||||||    
T  38552072 gtagggtaaaaccccgctttcatgggtccgggcttgggtatgggtaattacccgcaaattta 38552011  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 41865503 - 41865535
Alignment:
Q  132 tgaaaaatatgagggaaaatggagaaatctttc 164  Q
    ||||||||||||||||||||| |||||||||||    
T  41865503 tgaaaaatatgagggaaaatgaagaaatctttc 41865535  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 13044406 - 13044333
Alignment:
Q  88 agactttgtttgggagtttgga-gggaatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatc 160  Q
    |||||||||||| ||||||||| ||||||| |||| || || || ||||||||||||| |||||||||||||||    
T  13044406 agactttgtttgcgagtttggaagggaatgaaaggcttcgaggggtgaaaaatatgagagaaaatggagaaatc 13044333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 164
Target Start/End: Original strand, 38505160 - 38505244
Alignment:
Q  86 taagactttgtttgggagtttggaggg------aatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 164  Q
    |||| ||||||||||||||||||||||      || |||||| ||||| || || ||||| ||||||||||||||||||||||||    
T  38505160 taaggctttgtttgggagtttggaggggaggggaagggaaggctttgaggggtggaaaatttgagggaaaatggagaaatctttc 38505244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 33979338 - 33979277
Alignment:
Q  6 gtagggtaaaactccgctttcatggatccggacttggatctagg-aattacccgcaaattta 66  Q
    ||||||||||||  ||||||||||||||||| ||||| | | || |||||||||||||||||    
T  33979338 gtagggtaaaaccacgctttcatggatccgggcttgggtatgggtaattacccgcaaattta 33979277  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 114
Target Start/End: Original strand, 32851670 - 32851698
Alignment:
Q  86 taagactttgtttgggagtttggagggaa 114  Q
    |||||||||||||||||||||||||||||    
T  32851670 taagactttgtttgggagtttggagggaa 32851698  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 30775314 - 30775253
Alignment:
Q  6 gtagggtaaaactccgctttcatggatccggacttggatctagg-aattacccgcaaattta 66  Q
    ||||||||||||||||||||||| ||||||||||||| | | || |||||||||||||||||    
T  30775314 gtagggtaaaactccgctttcatagatccggacttgggtatgggtaattacccgcaaattta 30775253  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 14569904 - 14569950
Alignment:
Q  118 aaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 164  Q
    |||| ||||| || || ||||||||||||||||||||||||||||||    
T  14569904 aaggctttgaggggtggaaaatatgagggaaaatggagaaatctttc 14569950  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 16187273 - 16187211
Alignment:
Q  6 gtagggtaaaactccgctttcatggatccggacttggatctagg-aattacccgcaaatttaa 67  Q
    |||||||||||||||||||||||||||| ||  |||| | | || ||||||||||||||||||    
T  16187273 gtagggtaaaactccgctttcatggatcagggtttgggtatgggtaattacccgcaaatttaa 16187211  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 35854025 - 35853964
Alignment:
Q  6 gtagggtaaaactccgctttcatggatccggacttggatctagg-aattacccgcaaattta 66  Q
    |||||||||||| ||| |||||||||||||| ||||| | | || |||||||||||||||||    
T  35854025 gtagggtaaaaccccgttttcatggatccgggcttgggtatgggtaattacccgcaaattta 35853964  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 10955557 - 10955589
Alignment:
Q  132 tgaaaaatatgagggaaaatggagaaatctttc 164  Q
    |||||||||||||| ||||||||||||||||||    
T  10955557 tgaaaaatatgaggaaaaatggagaaatctttc 10955589  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 164
Target Start/End: Original strand, 41817123 - 41817199
Alignment:
Q  88 agactttgtttgggagtttggagggaatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 164  Q
    |||||||||||||||||||||||| || | |||||||||| || || ||||||| ||| ||||| |||| |||||||    
T  41817123 agactttgtttgggagtttggaggaaaggaaaggttttgaggggtgtaaaatataaggaaaaatagagagatctttc 41817199  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 32133980 - 32133914
Alignment:
Q  1 aatgagtagggtaaaactccgctttcatggatccggacttggatctagg-aattacccgcaaattta 66  Q
    |||| |||||||||||| |||||||||||| ||||||||||| | | || |||||||||||||||||    
T  32133980 aatgggtagggtaaaaccccgctttcatgggtccggacttgggtatgggtaattacccgcaaattta 32133914  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 48514938 - 48514879
Alignment:
Q  7 tagggtaaaactccgctttcatggatccggacttggatct-aggaattacccgcaaattt 65  Q
    ||||||||||| |||||||||||||||||  ||||||| | || ||||||||||||||||    
T  48514938 tagggtaaaaccccgctttcatggatccgagcttggatatgagtaattacccgcaaattt 48514879  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 69954 - 69912
Alignment:
Q  122 ttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 164  Q
    |||||| || ||||||||||||||||||||| |||||||||||    
T  69954 ttttgaggggtgaaaaatatgagggaaaatgaagaaatctttc 69912  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 14439792 - 14439751
Alignment:
Q  123 tttgaaggttgaaaaatatgagggaaaatggagaaatctttc 164  Q
    ||||| || |||||||||||||| ||||||||||||||||||    
T  14439792 tttgaggggtgaaaaatatgaggaaaaatggagaaatctttc 14439751  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 39027228 - 39027167
Alignment:
Q  6 gtagggtaaaactccgctttcatggatccggacttggatctagg-aattacccgcaaattta 66  Q
    |||||||||||| |||||||||||| ||||||||||| | | || |||||| ||||||||||    
T  39027228 gtagggtaaaaccccgctttcatgggtccggacttgggtatgggtaattactcgcaaattta 39027167  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 28192093 - 28192129
Alignment:
Q  6 gtagggtaaaactccgctttcatggatccggacttgg 42  Q
    |||||||||||| |||||||||||| |||||||||||    
T  28192093 gtagggtaaaaccccgctttcatgggtccggacttgg 28192129  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 47359550 - 47359495
Alignment:
Q  109 agggaatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 164  Q
    |||||| |||||| ||||| || || ||||||||||||||||||||||||||||||    
T  47359550 agggaagggaaggctttgaggggtggaaaatatgagggaaaatggagaaatctttc 47359495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 27197482 - 27197428
Alignment:
Q  110 gggaatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 164  Q
    ||||||| |||| |||||||| ||||||||||||| ||||||||| |||||||||    
T  27197482 gggaatgaaaggctttgaagggtgaaaaatatgagagaaaatggaaaaatctttc 27197428  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 34280722 - 34280668
Alignment:
Q  110 gggaatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 164  Q
    ||||| |||||| ||||| || || ||||||||||||||||||||||||||||||    
T  34280722 gggaagggaaggctttgaggggtggaaaatatgagggaaaatggagaaatctttc 34280668  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 517452 - 517532
Alignment:
Q  85 gtaagactttgtttgggagtttggaggg-aatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 164  Q
    ||||| |||||||||| ||||||||||| || |||||| || | ||| || ||||||| ||||||||| ||||||||||||    
T  517452 gtaaggctttgtttggtagtttggaggggaagggaaggcttgggagggtggaaaatattagggaaaattgagaaatctttc 517532  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 33900560 - 33900615
Alignment:
Q  109 agggaatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 164  Q
    |||||||| ||||||||||||| || ||||||||||| ||||| ||||||| ||||    
T  33900560 agggaatgaaaggttttgaagggtgcaaaatatgaggaaaaatagagaaatttttc 33900615  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 38694446 - 38694507
Alignment:
Q  6 gtagggtaaaactccgctttcatggatccggacttggatctagg-aattacccgcaaattta 66  Q
    ||||| ||||||||||||||||||| ||||| ||||| | | || |||||||||||||||||    
T  38694446 gtaggataaaactccgctttcatgggtccgggcttgggtatgggtaattacccgcaaattta 38694507  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 164
Target Start/End: Complemental strand, 49183895 - 49183866
Alignment:
Q  135 aaaatatgagggaaaatggagaaatctttc 164  Q
    ||||||||||||||||||||||||||||||    
T  49183895 aaaatatgagggaaaatggagaaatctttc 49183866  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 164
Target Start/End: Original strand, 50534978 - 50535007
Alignment:
Q  135 aaaatatgagggaaaatggagaaatctttc 164  Q
    ||||||||||||||||||||||||||||||    
T  50534978 aaaatatgagggaaaatggagaaatctttc 50535007  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 3537435 - 3537387
Alignment:
Q  116 ggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 164  Q
    |||||| ||||| || || |||||||||||||||||| |||||||||||    
T  3537435 ggaaggctttgaggggtggaaaatatgagggaaaatgaagaaatctttc 3537387  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 34757856 - 34757787
Alignment:
Q  91 ctttgtttgggagtttggagggaatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 164  Q
    ||||||||| ||||||||||||    ||||||||||| || || |||||||||| |||||| ||||||||||||    
T  34757856 ctttgtttgcgagtttggaggg----gaaggttttgaggggtggaaaatatgagagaaaattgagaaatctttc 34757787  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 41099967 - 41100014
Alignment:
Q  116 ggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatcttt 163  Q
    |||||| ||||| || ||||||||||||||||||||| ||||||||||    
T  41099967 ggaaggctttgaggggtgaaaaatatgagggaaaatgaagaaatcttt 41100014  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 164
Target Start/End: Original strand, 9104767 - 9104846
Alignment:
Q  86 taagactttgtttgggagtttggagggaatggaagg-ttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 164  Q
    |||| ||||||||||||||||||| || |||| ||| ||||| ||| ||| ||| ||  |||||||||||||||||||||    
T  9104767 taaggctttgtttgggagtttggaagggatgggagggttttggaggatgagaaacatatgggaaaatggagaaatctttc 9104846  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 24849395 - 24849449
Alignment:
Q  110 gggaatggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatctttc 164  Q
    ||||||| |||||||||| || || |||||||||||||||||  |||||||||||    
T  24849395 gggaatgaaaggttttgaggggtggaaaatatgagggaaaattaagaaatctttc 24849449  T

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Target: scaffold0263 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 163
Target Start/End: Original strand, 5807 - 5884
Alignment:
Q  92 tttgtttgggagtttggagggaat------ggaaggttttgaaggttgaaaaatatgagggaaaatggagaaatcttt 163  Q
    |||||||||||||||||||||||       |||||  ||||| || || |||||||||||||||||||||||||||||    
T  5807 tttgtttgggagtttggagggaagaggaagggaagactttgaggggtggaaaatatgagggaaaatggagaaatcttt 5884  T

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