View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7477_high_15 (Length: 275)
Name: NF7477_high_15
Description: NF7477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7477_high_15 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 25741359 - 25741633
Alignment:
| Q |
1 |
cagcaacaattgactcaaaagaaacacttttcatcatcacatgattattcacaccaccactatcaaataaaccaccccaacatagaacaaatccattctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25741359 |
cagcaacaattgactcaaaagaaacacttttcatcatcacatgattattcacaccaccactatcaaataaaccaccccaacatagaacaaatccattctt |
25741458 |
T |
|
| Q |
101 |
ttttctaataccacaagtgaaattttttcctaaagcaagacctgaaaaaactgaaccagaattcaaaggaacatttagcttaccagaatcattgttcttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25741459 |
ttttctaataccacaagtgaaattttttcctaaagcaagacctgaaaaaactgaaccagaattcaaaggaacatttagcttaccagaatcattgttcttc |
25741558 |
T |
|
| Q |
201 |
tcacctttacaaaccaaaactctatcaagagttaaaccacaaacatgtgacacaccagcaaccaatgttgacatt |
275 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25741559 |
tcacctttacaaaccaaaactttatcaagagttaaaccacaaacatgtgacacaccagcaaccaatgttgacatt |
25741633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University