View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7477_high_23 (Length: 217)

Name: NF7477_high_23

Description: NF7477

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF7477_high_23

[»] chr3 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 185; E-Value: 1e-100

Query Start/End: Original strand, 13 - 201

Target Start/End: Complemental strand, 55173277 - 55173089

Alignment:

Q	13	agtatcatagagatctgctgaagatattgccttctcagttgcccgattcttctccaaaaatggaaatctggtcaactactatatggtaattgctaatatt	112	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	55173277	agtatcacagagatctgctgaagatattgccttctcagttgcccgattcttctccaaaaatggaaatctggtcaactactatatggtaattgctaatatt	55173178	T

Q	113	atgtactaatgtagcaaactaactcaattgaatgtgaaattaactatgaatgaattgcagtaccatggtggaacaaactttggaagaac	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	55173177	atgtactaatgtagcaaactaactcaattgaatgtgaaattaactatgaatgaattgcagtaccatggtggaacaaactttggaagaac	55173089	T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 35; E-Value: 0.00000000008

Query Start/End: Original strand, 23 - 101

Target Start/End: Original strand, 27721937 - 27722015

Alignment:

Q	23	agatctgctgaagatattgccttctcagttgcccgattcttctccaaaaatggaaatctggtcaactactatatggtaa	101	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\| \| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	27721937	agatctgcagaagacattgccttctcagttgctcgcttcttctctaagcatggatctttagtcaactactatatggtaa	27722015	T

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