View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7477_high_24 (Length: 214)

Name: NF7477_high_24
Description: NF7477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7477_high_24
NF7477_high_24
[»] chr4 (9 HSPs)
chr4 (13-197)||(39082345-39082529)
chr4 (13-197)||(39087999-39088183)
chr4 (19-197)||(39091390-39091568)
chr4 (13-82)||(39071056-39071125)
chr4 (140-188)||(7615241-7615289)
chr4 (127-188)||(39097685-39097746)
chr4 (149-188)||(7637055-7637094)
chr4 (150-188)||(7656227-7656265)
chr4 (140-188)||(39070950-39070998)
[»] scaffold0190 (1 HSPs)
scaffold0190 (149-182)||(4459-4492)
[»] chr7 (1 HSPs)
chr7 (140-193)||(8936172-8936225)
[»] chr8 (1 HSPs)
chr8 (149-182)||(15745030-15745063)
[»] chr3 (1 HSPs)
chr3 (149-182)||(40147454-40147487)
[»] chr6 (1 HSPs)
chr6 (149-185)||(6500493-6500529)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 39082529 - 39082345
Alignment:
Q  13 gagatgaacaagatgattatgttgcattctgatgagaaaataagggatgattatgagtattggttgagaatgccgaagttatttgaaattggtaatttgg 112  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  39082529 gagatgaacaagatgattatgttgcgttctgatgagaaaataagggatgattatgagtgttggttgagaatgccgaagttatttgaagttggtaatttgg 39082430  T
Q  113 caggtagcaattcattggcgacgagtggttctcagaggtttgatgtttatggtaatgattttggttgggggaagccggtaggggt 197  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39082429 caggtagcaattcattggcgacgagtagttctcagaggtttgatgtttatggtaatgattttggttgggggaagccggtaggggt 39082345  T

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Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 39088183 - 39087999
Alignment:
Q  13 gagatgaacaagatgattatgttgcattctgatgagaaaataagggatgattatgagtattggttgagaatgccgaagttatttgaaattggtaatttgg 112  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||| |||||| ||||| ||||  |||  || |||||    
T  39088183 gagatgaacaagatgattatgttacgttctgatgagaaaataagggatgattatgagtgttggttgaaaatgccaaagttgtttgggattaatagtttgg 39088084  T
Q  113 caggtagcaattcattggcgacgagtggttctcagaggtttgatgtttatggtaatgattttggttgggggaagccggtaggggt 197  Q
    |||||   ||||||||||| |||||| ||||||  |||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  39088083 caggtgctaattcattggctacgagtagttctccaaggtttgatgtttatgataatgattttggttgggggaagcctgtaggggt 39087999  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 39091568 - 39091390
Alignment:
Q  19 aacaagatgattatgttgcattctgatgagaaaataagggatgattatgagtattggttgagaatgccgaagttatttgaaattggtaatttggcaggta 118  Q
    ||||||||||||||||  |||||||||||||||||||||||| | ||||||| ||||||||||||||||||| | ||||  |||| |  |||| | |||     
T  39091568 aacaagatgattatgtcacattctgatgagaaaataagggattactatgagtgttggttgagaatgccgaagatttttgggattgatgttttgacgggtg 39091469  T
Q  119 gcaattcattggcgacgagtggttctcagaggtttgatgtttatggtaatgattttggttgggggaagccggtaggggt 197  Q
    | ||| | ||||  || ||| |||||| ||||||||||||||| |||||||||||||||||||||||||| || |||||    
T  39091468 gtaatacgttgggaacaagtagttctccgaggtttgatgtttacggtaatgattttggttgggggaagcctgtgggggt 39091390  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 39071125 - 39071056
Alignment:
Q  13 gagatgaacaagatgattatgttgcattctgatgagaaaataagggatgattatgagtattggttgagaa 82  Q
    ||||| |||||||||||| |||| ||||||||||||||||||||| |  |||| |||| |||||||||||    
T  39071125 gagataaacaagatgattttgttacattctgatgagaaaataaggaaccattacgagtcttggttgagaa 39071056  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 7615289 - 7615241
Alignment:
Q  140 gttctcagaggtttgatgtttatggtaatgattttggttgggggaagcc 188  Q
    |||||| | |||||||||||||||||||||||||||||||||| |||||    
T  7615289 gttctccgtggtttgatgtttatggtaatgattttggttggggaaagcc 7615241  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 39097746 - 39097685
Alignment:
Q  127 ttggcgacgagtggttctcagaggtttgatgtttatggtaatgattttggttgggggaagcc 188  Q
    ||||| || ||| ||||||  ||||||||||||||||||||||| ||||||||||| |||||    
T  39097746 ttggcaactagtagttctccaaggtttgatgtttatggtaatgactttggttggggtaagcc 39097685  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 7637094 - 7637055
Alignment:
Q  149 ggtttgatgtttatggtaatgattttggttgggggaagcc 188  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  7637094 ggtttgatgtttatggtaatgattttggatggggaaagcc 7637055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 7656227 - 7656265
Alignment:
Q  150 gtttgatgtttatggtaatgattttggttgggggaagcc 188  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  7656227 gtttgatgtttatggtaatgattttggatggggaaagcc 7656265  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 39070998 - 39070950
Alignment:
Q  140 gttctcagaggtttgatgtttatggtaatgattttggttgggggaagcc 188  Q
    |||||| |||||||||||||| ||| ||||||||||| ||||| |||||    
T  39070998 gttctccgaggtttgatgtttttggcaatgattttggctggggaaagcc 39070950  T

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Target: scaffold0190 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 4492 - 4459
Alignment:
Q  149 ggtttgatgtttatggtaatgattttggttgggg 182  Q
    ||||||||||||||||||||||||||||||||||    
T  4492 ggtttgatgtttatggtaatgattttggttgggg 4459  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 8936172 - 8936225
Alignment:
Q  140 gttctcagaggtttgatgtttatggtaatgattttggttgggggaagccggtag 193  Q
    |||||| | |||||||||||||||||||||||||||| ||||| ||||| ||||    
T  8936172 gttctccgtggtttgatgtttatggtaatgattttggatggggaaagcctgtag 8936225  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 15745030 - 15745063
Alignment:
Q  149 ggtttgatgtttatggtaatgattttggttgggg 182  Q
    |||||||||||||||| |||||||||||||||||    
T  15745030 ggtttgatgtttatggcaatgattttggttgggg 15745063  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 40147454 - 40147487
Alignment:
Q  149 ggtttgatgtttatggtaatgattttggttgggg 182  Q
    |||||||||||||||||||||||||||| |||||    
T  40147454 ggtttgatgtttatggtaatgattttggatgggg 40147487  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 6500529 - 6500493
Alignment:
Q  149 ggtttgatgtttatggtaatgattttggttgggggaa 185  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  6500529 ggtttgatatttatggtaatgattttggatgggggaa 6500493  T

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