View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7477_high_5 (Length: 424)

Name: NF7477_high_5
Description: NF7477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7477_high_5
NF7477_high_5
[»] chr5 (6 HSPs)
chr5 (13-408)||(15699821-15700216)
chr5 (166-231)||(248540-248605)
chr5 (171-265)||(591267-591362)
chr5 (176-265)||(23129319-23129405)
chr5 (168-265)||(13978675-13978773)
chr5 (166-230)||(19113708-19113772)
[»] chr4 (7 HSPs)
chr4 (166-262)||(28695729-28695826)
chr4 (171-265)||(5047172-5047267)
chr4 (170-260)||(30978696-30978787)
chr4 (160-230)||(50131017-50131087)
chr4 (176-261)||(20787367-20787452)
chr4 (201-265)||(9044232-9044297)
chr4 (165-218)||(46521466-46521519)
[»] chr1 (11 HSPs)
chr1 (171-265)||(43492171-43492267)
chr1 (166-265)||(5799626-5799725)
chr1 (165-218)||(45925454-45925507)
chr1 (171-230)||(14758527-14758586)
chr1 (171-261)||(34861259-34861350)
chr1 (168-230)||(19547128-19547190)
chr1 (201-263)||(24607415-24607477)
chr1 (204-265)||(46895933-46895995)
chr1 (170-239)||(824698-824767)
chr1 (170-265)||(34445636-34445732)
chr1 (171-231)||(49003616-49003676)
[»] scaffold0172 (1 HSPs)
scaffold0172 (167-263)||(13429-13526)
[»] chr7 (6 HSPs)
chr7 (170-265)||(34681660-34681755)
chr7 (171-265)||(17883356-17883451)
chr7 (176-265)||(47405273-47405363)
chr7 (173-230)||(33899815-33899872)
chr7 (166-230)||(5248712-5248776)
chr7 (184-220)||(26638719-26638755)
[»] chr2 (6 HSPs)
chr2 (171-262)||(32859753-32859845)
chr2 (170-265)||(15120089-15120186)
chr2 (168-265)||(28572617-28572715)
chr2 (171-231)||(43745592-43745652)
chr2 (168-265)||(13538360-13538459)
chr2 (170-230)||(18375029-18375089)
[»] chr8 (10 HSPs)
chr8 (171-265)||(44042505-44042600)
chr8 (166-212)||(37231435-37231481)
chr8 (180-286)||(43429666-43429772)
chr8 (171-265)||(44254170-44254265)
chr8 (173-262)||(25279899-25279988)
chr8 (171-261)||(4166463-4166554)
chr8 (171-265)||(34336516-34336610)
chr8 (173-262)||(37564378-37564468)
chr8 (171-225)||(39312246-39312300)
chr8 (197-261)||(15352117-15352182)
[»] chr6 (1 HSPs)
chr6 (171-230)||(29407971-29408030)
[»] chr3 (8 HSPs)
chr3 (172-231)||(52380903-52380962)
chr3 (176-230)||(32734654-32734708)
chr3 (183-218)||(4275298-4275333)
chr3 (171-230)||(7278244-7278303)
chr3 (223-257)||(34334252-34334286)
chr3 (170-231)||(53605621-53605682)
chr3 (166-230)||(3973776-3973840)
chr3 (166-230)||(4009565-4009629)
[»] scaffold0011 (1 HSPs)
scaffold0011 (183-265)||(219170-219253)
[»] scaffold0182 (1 HSPs)
scaffold0182 (171-212)||(19658-19699)


Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 13 - 408
Target Start/End: Complemental strand, 15700216 - 15699821
Alignment:
Q  13 gagatgaagcaagaagtttcctatagagatgtttacgctcatgttcataagaggaaagatgggggatatatatctcggcgctcaaagaaactgatcgtaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  15700216 gagatgaagcaagaagtttcctatagagatgtttacgctcatgttcataagagtaaagatgggggatatatatctcggcgctcaaagaaattgatcgtaa 15700117  T
Q  113 gttaatttataatacgcacaagttaatatattatatggatgctacataaataatttatgggtcttgttatcgagtgccctaagggcactctttaaagatt 212  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15700116 gttaatttataatgcgcacaagttaatatattatatggatgctacataaataatttatgggtcttgctatcgagtgccctaagggcactctttaaagatt 15700017  T
Q  213 cttaattaggaaattatttactaaaaagtcaaatagttcaatttccaatgcatcgaagaacattaacttactattttagacttttaaagagtgacctgca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15700016 cttaattaggaaattatttactaaaaagtcaaatagttcaatttccaatgcatcgaagaacattaacttactattttagacttttaaagagtgccctgca 15699917  T
Q  313 tttcccttaatttatttatatttgtgatgctacatatagttaattatttgtatatgtggtaaaattattcttgatatattgtctcaggatttatat 408  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15699916 tttcccttaatttatttatatttgtgatgttacatatagttaattatttgtatatgtggtaaaattattcttgatatattgtcttaggatttatat 15699821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 248605 - 248540
Alignment:
Q  166 tttatgggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattattt 231  Q
    |||| ||||||||||| |||||| | |||||||||||||||| | |||| ||||| ||||||||||    
T  248605 tttaagggtcttgttaacgagtgtcttaagggcactctttaaggtttctcaattaagaaattattt 248540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 591362 - 591267
Alignment:
Q  171 gggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatt-tactaaaaagtcaaatagttcaatttccaatgcat 265  Q
    ||||||||||| |||||||||||| | |||||||||| ||||  |||| | ||||||||| |   |||||||| || | |||||||||||||||||    
T  591362 gggtcttgttaacgagtgccctaaagacactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaacttcaatttccaatgcat 591267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 265
Target Start/End: Original strand, 23129319 - 23129405
Alignment:
Q  176 ttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatttactaaaaagtcaaatagttcaatttccaatgcat 265  Q
    |||||| |||||| |||||||| ||||||   |||||| |||| | ||||||||||  |||||||||||| | | |||||||||||||||    
T  23129319 ttgttaacgagtgtcctaagggtactctt---agattcctaataaagaaattattttttaaaaagtcaaaaactccaatttccaatgcat 23129405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 265
Target Start/End: Complemental strand, 13978773 - 13978675
Alignment:
Q  168 tatgggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatttact-aaaaagtcaaatagttcaatttccaatgcat 265  Q
    |||||||||||||| |||||| ||||| |||||| ||||| ||||   ||| | ||||||||||  | ||||||| ||| | |||||||||||||||||    
T  13978773 tatgggtcttgttaacgagtgtcctaaaggcactttttaaggatttccaataaagaaattatttcttaaaaaagttaaaaacttcaatttccaatgcat 13978675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 19113772 - 19113708
Alignment:
Q  166 tttatgggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatt 230  Q
    |||| |||||||| || ||||||||||||||||| ||||||| |||||  ||||| |||| ||||    
T  19113772 tttaagggtcttgctaacgagtgccctaagggcattctttaaggattcgaaattaagaaaatatt 19113708  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 262
Target Start/End: Original strand, 28695729 - 28695826
Alignment:
Q  166 tttatgggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatttact-aaaaagtcaaatagttcaatttccaatg 262  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||  |||| | ||||||||||  | ||||||||||| | ||||||||||||||    
T  28695729 tttatgggtcttgttaacgagtgccctaagggcactctttaaggattactaataaagaaattattttttaaaaaagtcaaaaacttcaatttccaatg 28695826  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 265
Target Start/End: Original strand, 5047172 - 5047267
Alignment:
Q  171 gggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatttacta-aaaagtcaaatagttcaatttccaatgcat 265  Q
    |||| |||||| |||||||||||||||||||| |||| ||||  |||| | ||||||||| | || |||||||||| | |||||||||||||||||    
T  5047172 gggttttgttaacgagtgccctaagggcactcattaaggatttctaataaagaaattattcattacaaaagtcaaaaatttcaatttccaatgcat 5047267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 260
Target Start/End: Complemental strand, 30978787 - 30978696
Alignment:
Q  170 tgggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatttactaaaaa-gtcaaatagttcaatttccaa 260  Q
    ||||||||||||  ||||||||   |||||||||||||  ||||  ||||| ||||| ||||| |||||| |||||||||||||||||||||    
T  30978787 tgggtcttgttaaggagtgcccctggggcactctttaagcattccaaattaagaaatgatttattaaaaaagtcaaatagttcaatttccaa 30978696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 50131017 - 50131087
Alignment:
Q  160 aaataatttatgggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatt 230  Q
    |||||| ||||||||||||||| |||||||||| |||||| ||||||| | |||  ||||| |||||||||    
T  50131017 aaataacttatgggtcttgttaacgagtgccctgagggcattctttaaggtttcccaattaagaaattatt 50131087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 261
Target Start/End: Original strand, 20787367 - 20787452
Alignment:
Q  176 ttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatttactaaaaagtcaaatagttcaatttccaat 261  Q
    |||||| |||||| ||||| |||||||||||| |||| ||||| |  |||||||||  |||||||||||| | |||||||| ||||    
T  20787367 ttgttaacgagtgtcctaaaggcactctttaaggatttttaataaaaaaattattttttaaaaagtcaaaaacttcaattttcaat 20787452  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 9044232 - 9044297
Alignment:
Q  201 tctttaaagattcttaattaggaaattatttacta-aaaagtcaaatagttcaatttccaatgcat 265  Q
    |||||||| ||| | |||||| |||||||||| || ||||||||||||||||||||| ||| ||||    
T  9044232 tctttaaacattttaaattagaaaattatttattagaaaagtcaaatagttcaatttgcaaagcat 9044297  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 46521466 - 46521519
Alignment:
Q  165 atttatgggtcttgttatcgagtgccctaagggcactctttaaagattcttaat 218  Q
    ||||| ||||||||||| |||||||||| || ||||||||||| ||||| ||||    
T  46521466 atttaagggtcttgttaacgagtgcccttagagcactctttaaggattcctaat 46521519  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 43492267 - 43492171
Alignment:
Q  171 gggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatttact--aaaaagtcaaatagttcaatttccaatgcat 265  Q
    ||||||||||| ||||||||||||||||||||||||| ||||| |||| | ||||||||||  |  ||||||||||| | |||||||||||||||||    
T  43492267 gggtcttgttaacgagtgccctaagggcactctttaaggattcctaataaagaaattattttttaaaaaaagtcaaaaacttcaatttccaatgcat 43492171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 265
Target Start/End: Complemental strand, 5799725 - 5799626
Alignment:
Q  166 tttatgggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatttactaaaaagtcaaatagttcaatttccaatgcat 265  Q
    ||||||||||||| || ||||| |||| | | || | |||||  |||| ||||||||||||||||| ||||||||||||| | ||||||||| |||||||    
T  5799725 tttatgggtcttgctaacgagtaccctcaagacattttttaagtattcataattaggaaattattttctaaaaagtcaaacacttcaatttctaatgcat 5799626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 45925454 - 45925507
Alignment:
Q  165 atttatgggtcttgttatcgagtgccctaagggcactctttaaagattcttaat 218  Q
    |||| |||||||||||| |||||| ||||||| |||||||||| ||||||||||    
T  45925454 atttttgggtcttgttaacgagtgtcctaaggacactctttaaggattcttaat 45925507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 14758527 - 14758586
Alignment:
Q  171 gggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatt 230  Q
    ||||||||||| |||||| |||||||||||||||||||| ||   ||||| |||||||||    
T  14758527 gggtcttgttaacgagtgtcctaagggcactctttaaagttttccaattaagaaattatt 14758586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 261
Target Start/End: Complemental strand, 34861350 - 34861259
Alignment:
Q  171 gggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatttactaaaaa-gtcaaatagttcaatttccaat 261  Q
    ||||||||||| |||||||||   |||||||||||||  ||||| ||||| | ||||||||  |||||| |||||| | |||||||||||||    
T  34861350 gggtcttgttaacgagtgccccgggggcactctttaagcattctaaattaagtaattattttttaaaaatgtcaaacatttcaatttccaat 34861259  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 19547190 - 19547128
Alignment:
Q  168 tatgggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatt 230  Q
    ||||||||||| || ||||||||||||||||| ||||||| |||||  || || |||||||||    
T  19547190 tatgggtcttgctaacgagtgccctaagggcattctttaaggattcccaagtaagaaattatt 19547128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 24607477 - 24607415
Alignment:
Q  201 tctttaaagattcttaattaggaaattatttactaaaaagtcaaatagttcaatttccaatgc 263  Q
    ||||||| ||||||||||||  |||||||||  |||||| ||||||| || ||||||||||||    
T  24607477 tctttaaggattcttaattaataaattattttttaaaaattcaaatacttgaatttccaatgc 24607415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 46895933 - 46895995
Alignment:
Q  204 ttaaagattcttaattaggaaattatttact-aaaaagtcaaatagttcaatttccaatgcat 265  Q
    ||||||||||| ||||| ||||||||||| | |||||||| |||| |||||||||| ||||||    
T  46895933 ttaaagattctaaattaagaaattatttattgaaaaagtctaatatttcaatttccgatgcat 46895995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 824698 - 824767
Alignment:
Q  170 tgggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatttactaaaaa 239  Q
    ||||||||| || | |||| | ||| ||||||| |||| |||||| ||||||||||||||| ||||||||    
T  824698 tgggtcttgctaacaagtgtcttaaaggcactccttaaggattctcaattaggaaattattcactaaaaa 824767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 265
Target Start/End: Original strand, 34445636 - 34445732
Alignment:
Q  170 tgggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaatta-tttactaaaaagtcaaatagttcaatttccaatgcat 265  Q
    |||||||||||| |||||||||   | ||||||||||| |||||  ||  | ||||||| ||||  ||||||||||||| ||| |||||||||||||    
T  34445636 tgggtcttgttaacgagtgcccccggagcactctttaaggattccaaaagaagaaattaatttataaaaaagtcaaatatttcgatttccaatgcat 34445732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 49003616 - 49003676
Alignment:
Q  171 gggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattattt 231  Q
    ||||||||||| |||||||||||||| |||| ||||| ||||| |||| |  |||||||||    
T  49003616 gggtcttgttaacgagtgccctaaggacactatttaaggattcataataaaaaaattattt 49003676  T

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Target: scaffold0172 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 263
Target Start/End: Original strand, 13429 - 13526
Alignment:
Q  167 ttatgggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatttact-aaaaagtcaaatagttcaatttccaatgc 263  Q
    |||||| ||||| ||  |||||||||||||||||||||||||||||| |||||| |||| |||| | | |||||||| |||| |||||||||| ||||    
T  13429 ttatggctcttgctaatgagtgccctaagggcactctttaaagattcctaattaagaaactattcattgaaaaagtctaatacttcaatttccgatgc 13526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 170 - 265
Target Start/End: Original strand, 34681660 - 34681755
Alignment:
Q  170 tgggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatttacta-aaaagtcaaatagttcaatttccaatgcat 265  Q
    |||||||| ||| |||||||||   ||||| |||||||  ||||| ||||||||||||||||  || ||||||||||||||||||||||||||||||    
T  34681660 tgggtcttcttaacgagtgccccg-gggcagtctttaagcattctaaattaggaaattattttttacaaaagtcaaatagttcaatttccaatgcat 34681755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 17883451 - 17883356
Alignment:
Q  171 gggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatttact-aaaaagtcaaatagttcaatttccaatgcat 265  Q
    |||||| |||| |||||| |||||||||||||||||| |||| ||||| | ||||||||||  | ||||||||||| | || ||||||||| ||||    
T  17883451 gggtctagttaacgagtgtcctaagggcactctttaaggatttttaataaagaaattattttttaaaaaagtcaaaaactttaatttccaacgcat 17883356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 265
Target Start/End: Complemental strand, 47405363 - 47405273
Alignment:
Q  176 ttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatttactaaaaa-gtcaaatagttcaatttccaatgcat 265  Q
    |||||| |||||||| | |||||||||||||| ||||| |||| |  |||||||| | |||||| |||||| | ||||||||| |||||||    
T  47405363 ttgttaacgagtgccttgagggcactctttaaggattcctaataaataaattattcattaaaaaggtcaaaaacttcaatttctaatgcat 47405273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 33899872 - 33899815
Alignment:
Q  173 gtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatt 230  Q
    ||||||||| ||||||   |||||||||||||||||||||| |||| | |||||||||    
T  33899872 gtcttgttaacgagtgtagtaagggcactctttaaagattcctaataaagaaattatt 33899815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 5248776 - 5248712
Alignment:
Q  166 tttatgggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatt 230  Q
    |||| ||||||||||| ||||  || |||||||||||||||| ||||| |||| | |||||||||    
T  5248776 tttaagggtcttgttaacgagccccttaagggcactctttaaggattcctaataaagaaattatt 5248712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 26638719 - 26638755
Alignment:
Q  184 gagtgccctaagggcactctttaaagattcttaatta 220  Q
    |||||||||||||||||||||||| |||||| |||||    
T  26638719 gagtgccctaagggcactctttaaggattctcaatta 26638755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 262
Target Start/End: Original strand, 32859753 - 32859845
Alignment:
Q  171 gggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatt-tactaaaaagtcaaatagttcaatttccaatg 262  Q
    ||||||||||| |||||||||  ||||||||||||||| || || ||||||||| ||||| |   ||||||||||| ||||||||||||||||    
T  32859753 gggtcttgttaacgagtgcccccagggcactctttaaacatgctaaattaggaagttattctttaaaaaagtcaaacagttcaatttccaatg 32859845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 170 - 265
Target Start/End: Complemental strand, 15120186 - 15120089
Alignment:
Q  170 tgggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatttact--aaaaagtcaaatagttcaatttccaatgcat 265  Q
    |||| |||| || |||||||||| |||||||||||||| ||||| |||||| |||| | |||| |  ||||| |||| ||||||||||||||||||||    
T  15120186 tgggccttgctaacgagtgcccttagggcactctttaaggattcctaattaagaaaatgtttatttaaaaaaatcaattagttcaatttccaatgcat 15120089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 168 - 265
Target Start/End: Complemental strand, 28572715 - 28572617
Alignment:
Q  168 tatgggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatttact-aaaaagtcaaatagttcaatttccaatgcat 265  Q
    ||||| |||||||| ||||||  |||||| |||||||||| ||||| |||||| |||| | |||| | ||||| ||||||||||||||||| |||||||    
T  28572715 tatggatcttgttaacgagtgttctaaggtcactctttaaggattcctaattaagaaaatgtttattgaaaaaatcaaatagttcaatttctaatgcat 28572617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 43745592 - 43745652
Alignment:
Q  171 gggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattattt 231  Q
    ||||||||||| |||||||||| |||||||||||||| |||||  ||| | ||||||||||    
T  43745592 gggtcttgttaacgagtgcccttagggcactctttaaggattccaaataaagaaattattt 43745652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 265
Target Start/End: Original strand, 13538360 - 13538459
Alignment:
Q  168 tatgggtcttgttatcgagtgcccta-agggcactctttaaagattcttaattaggaaattatttactaaaaagt-caaatagttcaatttccaatgcat 265  Q
    |||||||||||||| |||||||||   ||||||||||||||  || || |||||| ||||||||   |||||| | |||||| |||||||||||||||||    
T  13538360 tatgggtcttgttaacgagtgcccccgagggcactctttaagcatactaaattagaaaattattctttaaaaaattcaaataattcaatttccaatgcat 13538459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 18375029 - 18375089
Alignment:
Q  170 tgggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatt 230  Q
    |||||||||||| |||||  |||||||| ||||||||| ||||| |||| | |||||||||    
T  18375029 tgggtcttgttaacgagtatcctaagggtactctttaaggattcctaataaagaaattatt 18375089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 265
Target Start/End: Original strand, 44042505 - 44042600
Alignment:
Q  171 gggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatttact-aaaaagtcaaatagttcaatttccaatgcat 265  Q
    |||| |||||| |||||||||||||| |||||||||| ||||| |||||| |||| |||| | | |||||||  |||| |||||||||||||||||    
T  44042505 gggttttgttaacgagtgccctaaggacactctttaaggattcataattaagaaactattcattgaaaaagttcaatacttcaatttccaatgcat 44042600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 37231481 - 37231435
Alignment:
Q  166 tttatgggtcttgttatcgagtgccctaagggcactctttaaagatt 212  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||    
T  37231481 tttatgggtcttgttaacgagtgcccttagggcactctttaaagatt 37231435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 286
Target Start/End: Original strand, 43429666 - 43429772
Alignment:
Q  180 tatcgagtgccctaagggcactctttaaagattcttaattaggaaattatttact-aaaaagtcaaatagttcaatttccaatgcatcgaagaacattaa 278  Q
    ||||||||||| ||| | ||||||||||||||||||||| | ||||||||||  | ||||||||||| | |||||||| |||| ||| | | ||||| ||    
T  43429666 tatcgagtgccataaagacactctttaaagattcttaatgaagaaattatttcttaaaaaagtcaaaaacttcaattttcaatccattg-ataacataaa 43429764  T
Q  279 cttactat 286  Q
    ||||||||    
T  43429765 cttactat 43429772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 44254265 - 44254170
Alignment:
Q  171 gggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatttact-aaaaagtcaaatagttcaatttccaatgcat 265  Q
    ||||||||||| |||||| |||||||||||||||||| ||||  |||| | |||||| ||   | ||||||||||| | |||||||||||||||||    
T  44254265 gggtcttgttaacgagtgtcctaagggcactctttaaggatttctaataaagaaattcttccttaaaaaagtcaaaaacttcaatttccaatgcat 44254170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 262
Target Start/End: Original strand, 25279899 - 25279988
Alignment:
Q  173 gtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatttactaaaaagtcaaatagttcaatttccaatg 262  Q
    ||||||||| |||||||||  | | ||||||||||  || || ||||||||| |||||   |||||||||||||| ||||||||||||||    
T  25279899 gtcttgttaacgagtgcccctacgacactctttaagcatgctaaattaggaagttattctttaaaaagtcaaataattcaatttccaatg 25279988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 261
Target Start/End: Original strand, 4166463 - 4166554
Alignment:
Q  171 gggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatttact-aaaaagtcaaatagttcaatttccaat 261  Q
    |||| |||||| |||||  |||||||||||||||||| ||||| |||| | ||||||||| | | |||||||  |||| |||||||||||||    
T  4166463 gggttttgttaacgagtttcctaagggcactctttaaggattcataatcaagaaattattcattgaaaaagttcaatatttcaatttccaat 4166554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 34336610 - 34336516
Alignment:
Q  171 gggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatttactaaaaa-gtcaaatagttcaatttccaatgcat 265  Q
    ||||||||||| ||| |||||| | | |||||||||| |||||||||| | |||||||||   |||||| |||||| | |||||||||||||||||    
T  34336610 gggtcttgttaacgattgcccttatg-cactctttaaggattcttaataaagaaattattctttaaaaaagtcaaaaacttcaatttccaatgcat 34336516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 262
Target Start/End: Complemental strand, 37564468 - 37564378
Alignment:
Q  173 gtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatttactaaaaa-gtcaaatagttcaatttccaatg 262  Q
    ||||||||| ||||||||    || ||||||||||| || || ||||| |||||||||   |||||| |||||||||||||||||||||||    
T  37564468 gtcttgttaacgagtgcctctgggacactctttaaacatgctaaattaagaaattattctttaaaaaagtcaaatagttcaatttccaatg 37564378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 39312300 - 39312246
Alignment:
Q  171 gggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaa 225  Q
    |||||||| || | |||||||  |||||||||||||| |||||||||||||||||    
T  39312300 gggtcttgctaacaagtgcccatagggcactctttaaggattcttaattaggaaa 39312246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 15352182 - 15352117
Alignment:
Q  197 gcactctttaaagattcttaattaggaaattatttactaaaaa-gtcaaatagttcaatttccaat 261  Q
    |||||||||||| ||||| |||||  ||||||||   |||||| ||||||||||||||||||||||    
T  15352182 gcactctttaaacattctaaattaaaaaattattctgtaaaaaagtcaaatagttcaatttccaat 15352117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 29407971 - 29408030
Alignment:
Q  171 gggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatt 230  Q
    ||||||||||| |||||||| |||||||||||||||| ||||| |||| | |||||||||    
T  29407971 gggtcttgttaacgagtgccttaagggcactctttaaggattcctaataaagaaattatt 29408030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 52380962 - 52380903
Alignment:
Q  172 ggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattattt 231  Q
    ||||||||||| ||||| |||||||||||||||||| ||||| |||| | ||||||||||    
T  52380962 ggtcttgttatggagtgtcctaagggcactctttaacgattcctaataaagaaattattt 52380903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 32734654 - 32734708
Alignment:
Q  176 ttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatt 230  Q
    |||||| ||||||||||||||||||||||||| ||||| |||| | |||||||||    
T  32734654 ttgttaacgagtgccctaagggcactctttaaggattcctaataaagaaattatt 32734708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 218
Target Start/End: Complemental strand, 4275333 - 4275298
Alignment:
Q  183 cgagtgccctaagggcactctttaaagattcttaat 218  Q
    ||||||| ||||||||||||||||||||||||||||    
T  4275333 cgagtgctctaagggcactctttaaagattcttaat 4275298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 7278303 - 7278244
Alignment:
Q  171 gggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatt 230  Q
    |||||||| || ||||||||||||||||||||||||| ||| || ||||| |||| ||||    
T  7278303 gggtcttgctaacgagtgccctaagggcactctttaaggatactcaattacgaaactatt 7278244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 257
Target Start/End: Complemental strand, 34334286 - 34334252
Alignment:
Q  223 aaattatttactaaaaagtcaaatagttcaatttc 257  Q
    ||||||||||||||||||||||||| |||||||||    
T  34334286 aaattatttactaaaaagtcaaataattcaatttc 34334252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 53605621 - 53605682
Alignment:
Q  170 tgggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattattt 231  Q
    |||||||||||| ||||| ||||||||||||| |||||  |||| |||| | ||||||||||    
T  53605621 tgggtcttgttaacgagtaccctaagggcactttttaagaattcctaataatgaaattattt 53605682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 3973776 - 3973840
Alignment:
Q  166 tttatgggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatt 230  Q
    |||||| ||||||||| | ||||||||||| ||||||||||| | |||  ||||| |||||||||    
T  3973776 tttatgtgtcttgttaacaagtgccctaagagcactctttaaggtttcccaattaagaaattatt 3973840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 4009629 - 4009565
Alignment:
Q  166 tttatgggtcttgttatcgagtgccctaagggcactctttaaagattcttaattaggaaattatt 230  Q
    |||||| ||||||||| | ||||||||||| ||||||||||| | |||  ||||| |||||||||    
T  4009629 tttatgtgtcttgttaacaagtgccctaagagcactctttaaggtttcccaattaagaaattatt 4009565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 219170 - 219253
Alignment:
Q  183 cgagtgccctaagggcactctttaaagattcttaattaggaaattatttacta-aaaagtcaaatagttcaatttccaatgcat 265  Q
    |||||| | ||||| || |||||||  ||| | |||||||||||||||   || ||||||||||||||||||||||||||||||    
T  219170 cgagtgtcttaaggacattctttaagcattttaaattaggaaattattctttacaaaagtcaaatagttcaatttccaatgcat 219253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 19658 - 19699
Alignment:
Q  171 gggtcttgttatcgagtgccctaagggcactctttaaagatt 212  Q
    ||||||||||| |||||||||| |||||||||||||| ||||    
T  19658 gggtcttgttaacgagtgcccttagggcactctttaaggatt 19699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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