View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7477_high_6 (Length: 417)
Name: NF7477_high_6
Description: NF7477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7477_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 2429691 - 2429909
Alignment:
| Q |
18 |
gtatttgaatactatcatctttatacaaaattcttggagtttatgctgcctcttataagagaaggaaaggttgtgtatgtggaagacatagctgagggtc |
117 |
Q |
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| T |
2429691 |
gtatttgaatactatcatctttatacaaaattcttggagtttatgctgcctcttataagagaaggaaaggttgtgtatgtggaagacatagctgagggtc |
2429790 |
T |
|
| Q |
118 |
ttgagaatggccctgcagctttggttggtctgtttagtggtcaaaatgttggtaaacaagtggttgttgttgctcatgagtgaaagaatgaacgcagatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2429791 |
ttgagaatggccctgcagctttggttggtctgtttagtggtcaaaatgttggtaaacaagtggttgttgttgctcatgagtgaaagaatgaacgcagatt |
2429890 |
T |
|
| Q |
218 |
ctttggttaaatatttgtg |
236 |
Q |
| |
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||||||||||||||||||| |
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| T |
2429891 |
ctttggttaaatatttgtg |
2429909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 275 - 399
Target Start/End: Original strand, 2429942 - 2430066
Alignment:
| Q |
275 |
gtgtttagttacttgtgcatggagcaccctttggaggacctttgcgagcctcttcatccactctgttgattgtaatatcttcttaattaacattttatga |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2429942 |
gtgtttagttacttgtgcatggagcaccctttggaggacctttgcgagcctcttcatccactctgttgattgtaatatcttcttaattaacattttatga |
2430041 |
T |
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| Q |
375 |
tagacttaaatatagttttgatcct |
399 |
Q |
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||||||||||||||||||||||||| |
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| T |
2430042 |
tagacttaaatatagttttgatcct |
2430066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 27 - 201
Target Start/End: Original strand, 2436043 - 2436217
Alignment:
| Q |
27 |
tactatcatctttatacaaaattcttggagtttatgctgcctcttataagagaaggaaaggttgtgtatgtggaagacatagctgagggtcttgagaatg |
126 |
Q |
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|||| ||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2436043 |
tactttcacctttatacaaaattcttggagtttgtcctgcctcttataagagaaggaaaggttgtgtatgtggaagacatagctgagggtcttgagaatg |
2436142 |
T |
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| Q |
127 |
gccctgcagctttggttggtctgtttagtggtcaaaatgttggtaaacaagtggttgttgttgctcatgagtgaa |
201 |
Q |
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| T |
2436143 |
gtcctgctgcattgattggcctatatagtggtcgcaatgttggtaaacaagtggttgctgttgctcatgaatgaa |
2436217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 27 - 201
Target Start/End: Original strand, 2432682 - 2432856
Alignment:
| Q |
27 |
tactatcatctttatacaaaattcttggagtttatgctgcctcttataagagaaggaaaggttgtgtatgtggaagacatagctgagggtcttgagaatg |
126 |
Q |
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|||| ||| |||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2432682 |
tactttcacctttatacaaaattcttggaatttgtcctgcctcttataagagaaggaaagattgtgtatgtggaagacatagctgagggtcttgagaatg |
2432781 |
T |
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| Q |
127 |
gccctgcagctttggttggtctgtttagtggtcaaaatgttggtaaacaagtggttgttgttgctcatgagtgaa |
201 |
Q |
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| T |
2432782 |
gtcctgctgcattgattggcctatacagtggtcgcaatgttggtaaacaagtggttgttgttgctcatgaatgaa |
2432856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 30 - 192
Target Start/End: Complemental strand, 2516309 - 2516147
Alignment:
| Q |
30 |
tatcatctttatacaaaattcttggagtttatgctgcctcttataagagaaggaaaggttgtgtatgtggaagacatagctgagggtcttgagaatggcc |
129 |
Q |
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|||||||| || || |||||||| |||||| | ||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||| || | |
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| T |
2516309 |
tatcatctatacaccaaattcttagagtttgtcctgcctcatataagagaaggtagggttgtgtatgtggaagacatagctgagggtcttgagaaaggtc |
2516210 |
T |
|
| Q |
130 |
ctgcagctttggttggtctgtttagtggtcaaaatgttggtaaacaagtggttgttgttgctc |
192 |
Q |
| |
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||||||| |||||||| | ||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
2516209 |
ctgcagccttggttggcatctttagcggtcgcaatgttggtaaacaagtggttgttgttgctc |
2516147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 2512046 - 2511867
Alignment:
| Q |
22 |
ttgaatactatcatctttatacaaaattcttggagtttatgctgcctcttataagagaaggaaaggttgtgtatgtggaagacatagctgagggtcttga |
121 |
Q |
| |
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|||| ||||||||||| ||| | || ||||| || || | ||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2512046 |
ttgattactatcatctatatgccaagttcttagacttcgtcctgcctcatatcagagaagggaaggttgtgtatgtggaagacatagctgagggtcttga |
2511947 |
T |
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| Q |
122 |
gaatggccctgcagctttggttggtctgtttagtggtcaaaatgttggtaaacaagtggttgttgttgctcatgagtgaa |
201 |
Q |
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| T |
2511946 |
gaaaggtcctgcagctttggttggcatatttagtggtaaaaatgttggcaaacaagtgcttgttgttgctcgtgaatgaa |
2511867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 2505420 - 2505246
Alignment:
| Q |
27 |
tactatcatctttatacaaaattcttggagtttatgctgcctcttataagagaaggaaaggttgtgtatgtggaagacatagctgagggtcttgagaatg |
126 |
Q |
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||||||||||| || |||||||||||||||| | ||||||| ||| |||||||| |||||||||||||| |||||||||||||||||||||||||| | |
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| T |
2505420 |
tactatcatctatacggaaaattcttggagtttgtcctgcctcatatcagagaagggaaggttgtgtatgtagaagacatagctgagggtcttgagaaag |
2505321 |
T |
|
| Q |
127 |
gccctgcagctttggttggtctgtttagtggtcaaaatgttggtaaacaagtggttgttgttgctcatgagtgaa |
201 |
Q |
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| T |
2505320 |
gccctgaagccttggttggcatatttagtggcaaaaatgttggcaaacaagtgcttgttgttgctcgtgaatgaa |
2505246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 45 - 192
Target Start/End: Complemental strand, 2496721 - 2496574
Alignment:
| Q |
45 |
aaattcttggagtttatgctgcctcttataagagaaggaaaggttgtgtatgtggaagacatagctgagggtcttgagaatggccctgcagctttggttg |
144 |
Q |
| |
|
||||| ||||||||| | || |||| ||| ||||| || ||| |||||||||| ||||||||| |||||||||||||||||||||||||||| ||| ||| |
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| T |
2496721 |
aaattgttggagtttgtcctccctcatatcagagatgggaagattgtgtatgttgaagacataactgagggtcttgagaatggccctgcagccttgattg |
2496622 |
T |
|
| Q |
145 |
gtctgtttagtggtcaaaatgttggtaaacaagtggttgttgttgctc |
192 |
Q |
| |
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| || | |||||||| ||||||||||||||||||||||| ||||||| |
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| T |
2496621 |
gcctatatagtggtcgcaatgttggtaaacaagtggttgtcgttgctc |
2496574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 281 - 402
Target Start/End: Original strand, 2436279 - 2436397
Alignment:
| Q |
281 |
agttacttgtgcatggagcaccctttggaggacctttgcgagcctcttcatccactctgttgattgtaa-tatcttcttaattaacattttatgatagac |
379 |
Q |
| |
|
||||||||||| |||||||| ||||||| |||||||| | |||||||||||| |||||||||||||| |||||||||||| |||||| |||| || |
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| T |
2436279 |
agttacttgtgtatggagcattctttggatgacctttggaaacctcttcatccaatctgttgattgtaattatcttcttaat----attttacgatatac |
2436374 |
T |
|
| Q |
380 |
ttaaatatagttttgatcctcat |
402 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
2436375 |
ttaaatatagttttgatcctcat |
2436397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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