View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7477_high_7 (Length: 373)
Name: NF7477_high_7
Description: NF7477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7477_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 357
Target Start/End: Complemental strand, 55173432 - 55173089
Alignment:
| Q |
14 |
tcatgatgtgatcatgagtttaataattttatttggcagatcaatgcatgcaatggaagacattgtggtgataccttctcaggaccaaacaaaccataca |
113 |
Q |
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| T |
55173432 |
tcatgatgtgatcatgagtttaataattttatttggcagatcaatgcatgcaatggaagacattgtggtgataccttctcaggaccaaacaaaccataca |
55173333 |
T |
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| Q |
114 |
agccttccctatggactgaaaattggaccgctcagtacagagtatttggtgatccagtatcacagagatctgctgaagatattgccttctcagttgcccg |
213 |
Q |
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| T |
55173332 |
agccttccctatggactgaaaattggaccgctcagtacagagtatttggtgatccagtatcacagagatctgctgaagatattgccttctcagttgcccg |
55173233 |
T |
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| Q |
214 |
attcttctccaaaaatggaaatctggtcaactactatatggtaattgctaatattatgtactaatgtagcaaactaactcaattgaatgtgaaattaact |
313 |
Q |
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| T |
55173232 |
attcttctccaaaaatggaaatctggtcaactactatatggtaattgctaatattatgtactaatgtagcaaactaactcaattgaatgtgaaattaact |
55173133 |
T |
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| Q |
314 |
atgaatgaattgcagtaccatggtggaacaaactttggaagaac |
357 |
Q |
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| T |
55173132 |
atgaatgaattgcagtaccatggtggaacaaactttggaagaac |
55173089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 27721586 - 27721690
Alignment:
| Q |
46 |
ttggcagatcaatgcatgcaatggaagacattgtggtgataccttctcaggaccaaacaaaccatacaagccttccctatggactgaaaattggaccgct |
145 |
Q |
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| T |
27721586 |
ttggcagattaatgcatgcaatggaaggcactgtggtgatacctttacaggtccaaacaaaccatacaaacctttcatatggactgaaaactggactgct |
27721685 |
T |
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| Q |
146 |
cagta |
150 |
Q |
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| T |
27721686 |
cagta |
27721690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 152 - 257
Target Start/End: Original strand, 27721910 - 27722015
Alignment:
| Q |
152 |
agagtatttggtgatccagtatcacagagatctgctgaagatattgccttctcagttgcccgattcttctccaaaaatggaaatctggtcaactactata |
251 |
Q |
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||||||||||| |||||| ||| || |||||||| ||||| ||||||||||||||||| || |||||||| || ||||| | | ||||||||||||| |
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| T |
27721910 |
agagtatttggagatccaccatctcaaagatctgcagaagacattgccttctcagttgctcgcttcttctctaagcatggatctttagtcaactactata |
27722009 |
T |
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| Q |
252 |
tggtaa |
257 |
Q |
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|||||| |
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| T |
27722010 |
tggtaa |
27722015 |
T |
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