View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7477_high_9 (Length: 340)
Name: NF7477_high_9
Description: NF7477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7477_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 32404700 - 32404384
Alignment:
| Q |
1 |
ggagaaactaaatggattggacaacaacatggagttgtgacaaattgtctcaaataacagcaagaacaacaacatgatacattaaatctcattcttaaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32404700 |
ggagaaactaaatggattggacaacaacatggagttgtgacaaattgtctcaaataacagcaagagcaacaacatgatacattaaatctcattcttaaat |
32404601 |
T |
|
| Q |
101 |
gattaatacaaacccaaacgaaattatgctaacactaataccatattggttacttcattataactacaaaaagagttaatgagattaaaagagccataaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
32404600 |
gattaatacaaacccaaacgaaattatgctaacactaataccatattggttacttcattataactacaaaaagagttaatgaaattaacagagccataaa |
32404501 |
T |
|
| Q |
201 |
aaatgtcattgccttgaaaaatcttagtgtgatcttcatgtcatgaacttcctgtttggtttctctcagttcatgcagaatggataggatttgtgattgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32404500 |
aaatgtcattgccttgaaaaatcttagtgtgatcttcatgtcatgaacttcctgtttggtttctctcagttcatgtagaatggataggatttgtgattgt |
32404401 |
T |
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| Q |
301 |
tcaaacattccattttc |
317 |
Q |
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||||||||||||||||| |
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| T |
32404400 |
tcaaacattccattttc |
32404384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 7347776 - 7348092
Alignment:
| Q |
1 |
ggagaaactaaatggattggacaacaacatggagttgtgacaaattgtctcaaataacagcaagaacaacaacatgatacattaaatctcattcttaaat |
100 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7347776 |
ggagaaattaaatggattgaacaacaacatggagttgtgacaaattgtctcaaataacagcaagaacaagaacatgatacattaaatctcattcttaaat |
7347875 |
T |
|
| Q |
101 |
gattaatacaaacccaaacgaaattatgctaacactaataccatattggttacttcattataactacaaaaagagttaatgagattaaaagagccataaa |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
7347876 |
gattaatacaaacctaaacgaaattatgctaacactaataccatattggttacttcattataactacaaaaagagttaatgaaattaacagagccataaa |
7347975 |
T |
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| Q |
201 |
aaatgtcattgccttgaaaaatcttagtgtgatcttcatgtcatgaacttcctgtttggtttctctcagttcatgcagaatggataggatttgtgattgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7347976 |
aaatgtcattgccttgaaaaatcttagtgtgatcttcatgtcatgaacttcctgtttggtttctctcagttcatgtagaatggataggatttgtgattgt |
7348075 |
T |
|
| Q |
301 |
tcaaacattccattttc |
317 |
Q |
| |
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||||||||||||||||| |
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| T |
7348076 |
tcaaacattccattttc |
7348092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 35431552 - 35431646
Alignment:
| Q |
223 |
cttagtgtgatcttcatgtcatgaacttcctgtttggtttctctcagttcatgcagaatggataggatttgtgattgttcaaacattccattttc |
317 |
Q |
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| T |
35431552 |
cttagtgtgatcttcatgtcatgaacttcatgtttggtttctctcagttcatgcagaatggatataatttgtgattgttcaaacattccattttc |
35431646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 19067191 - 19066993
Alignment:
| Q |
1 |
ggagaaactaaatggattggacaacaacatggagttgtgacaaattgtctcaaataacagcaagaacaacaacatgatacattaaatctcattcttaaat |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| |
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| T |
19067191 |
ggagaaactaaatggattggacaacaacatggagttgtgacaaattgtctcaaataaaaacaagaacaacaacacgatacattaaatctcattcttaaat |
19067092 |
T |
|
| Q |
101 |
gattaatacaaacccaaacgaaattatgctaacactaataccatattggttacttcattataactacaaaaagagttaatgagattaaaagagccataa |
199 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |
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| T |
19067091 |
gattaatacaaactcaaacgaaattatgataacactaataccatattggttacttcattataactacaaaaagagttaatgaaattaacagagcaataa |
19066993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 20687982 - 20687884
Alignment:
| Q |
1 |
ggagaaactaaatggattggacaacaacatggagttgtgacaaattgtctcaaataacagcaagaacaacaacatgatacattaaatctcattcttaaat |
100 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20687982 |
ggagaaactaaatggattggactacaacatggagttgtgataaattgtctcaaataacagcaagaaca--aacatgatacattaaatctcattcttaaat |
20687885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 55512421 - 55512323
Alignment:
| Q |
1 |
ggagaaactaaatggattggacaacaacatggagttgtgacaaattgtctcaaataacagcaagaacaacaacatgatacattaaatctcattcttaaat |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
55512421 |
ggagaaactaaatggattggactacaacatggagttgtgacaaattgtctcaaataacagcaagaaca--aacatgatacattaaatctcattcttaaat |
55512324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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