View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7477_low_13 (Length: 303)
Name: NF7477_low_13
Description: NF7477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7477_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 286
Target Start/End: Complemental strand, 40421929 - 40421651
Alignment:
| Q |
8 |
tggtgttgacatgcctggtgctgattatcaactcatcaaactcttgaatctaaatccatccactaaaaggttcatgttataccaccaaggttgttatgct |
107 |
Q |
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| T |
40421929 |
tggtgttgacatgcctggtgctgattatcaactcatcaaactcttgaatctaaatccatccactaaaaggttcatgttataccaccaaggttgttatgct |
40421830 |
T |
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| Q |
108 |
ggtggaaccgttcttcgtcttgccaaagatctagctgagaataacattggtgcacgtgtcctcgtcgtgtgttctgaaataactgttgttacttttcgtg |
207 |
Q |
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| T |
40421829 |
ggtggaaccgttcttcgtcttgccaaagatctagctgagaataacattggtgcacgtgtcctcgttgtgtgttctgaaataactgttgttacttttcgtg |
40421730 |
T |
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| Q |
208 |
ggcccaatgaaacacacttggattccttagttggacaagcactttttggtgatggtgcttcgtctgtgatcgttggatc |
286 |
Q |
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| T |
40421729 |
ggcccaatgaaacacacttggattctttagttggacaagcactttttggtgatggtgcttcgtctgtgatcgttggatc |
40421651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 5284419 - 5284577
Alignment:
| Q |
8 |
tggtgttgacatgcctggtgctgattatcaactcatcaaactcttgaatctaaatccatccactaaaaggttcatgttataccaccaaggttgttatgct |
107 |
Q |
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| T |
5284419 |
tggtgtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaacaagggtgttttgca |
5284518 |
T |
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| Q |
108 |
ggtggaaccgttcttcgtcttgccaaagatctagctgagaataacattggtgcacgtgt |
166 |
Q |
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| T |
5284519 |
ggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaaggtgctcgtgt |
5284577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 5302671 - 5302765
Alignment:
| Q |
72 |
aaaaggttcatgttataccaccaaggttgttatgctggtggaaccgttcttcgtcttgccaaagatctagctgagaataacattggtgcacgtgt |
166 |
Q |
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| T |
5302671 |
aaaaggtacatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatctagctgagaacaacaaaggtgctcgtgt |
5302765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 5310508 - 5310553
Alignment:
| Q |
8 |
tggtgttgacatgcctggtgctgattatcaactcatcaaactcttg |
53 |
Q |
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| T |
5310508 |
tggtgtagacatgcctggagctgattatcaactcacaaaactcttg |
5310553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 5315222 - 5315263
Alignment:
| Q |
8 |
tggtgttgacatgcctggtgctgattatcaactcatcaaact |
49 |
Q |
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| T |
5315222 |
tggtgttgacatgcctggagcagattatcaactcaccaaact |
5315263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 1478110 - 1478154
Alignment:
| Q |
8 |
tggtgttgacatgcctggtgctgattatcaactcatcaaactctt |
52 |
Q |
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| T |
1478110 |
tggtgtagacatgcctggcgctgattaccaactcaccaaactctt |
1478154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 1505088 - 1505132
Alignment:
| Q |
8 |
tggtgttgacatgcctggtgctgattatcaactcatcaaactctt |
52 |
Q |
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| T |
1505088 |
tggtgtagacatgcctggagctgattaccaactcaccaaactctt |
1505132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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