View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7477_low_18 (Length: 243)
Name: NF7477_low_18
Description: NF7477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7477_low_18 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 31265170 - 31265392
Alignment:
| Q |
1 |
aaagcctttcctcgcctaagattggagaacaatattatggccataaggagcgtcttatatggcatgggcatgttgatagtgtgcaaacacnnnnnnnnnn |
100 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||| |
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| T |
31265170 |
aaagccttacttcgcctaagattggagaacaatattatggccataaggagcgtattatatggcatg------ttgacagtgtgcaaacactttttttttt |
31265263 |
T |
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| Q |
101 |
nnnnnnnnnatgcaaatagaaagtttatatcctaacattgaaggtatcattaactgcatccatcttaccacacttatttcctacatgttttgacctattt |
200 |
Q |
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| T |
31265264 |
tttttt---atgcaaatagaaagtttatatcctatcattggaggtatcattaactgcatccatcttaccacacttatttcctacatgttttgacctattt |
31265360 |
T |
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| Q |
201 |
cctacttccccaccacttggttttggaatatt |
232 |
Q |
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||||||||||||||||||||||||| |||||| |
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| T |
31265361 |
cctacttccccaccacttggttttgaaatatt |
31265392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 22045549 - 22045486
Alignment:
| Q |
146 |
atcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttcc |
209 |
Q |
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| T |
22045549 |
atcattatccgcatcaatcttaccacacttaactcctacctgttttgacccacttcctacttcc |
22045486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 84179 - 84242
Alignment:
| Q |
146 |
atcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttcc |
209 |
Q |
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| T |
84179 |
atcattatccgcatcaatcttaccacacttaactcctacctgttttgacccacttcctacttcc |
84242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 2501625 - 2501562
Alignment:
| Q |
146 |
atcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttcc |
209 |
Q |
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| T |
2501625 |
atcattatccgcatcaatcttaccacacttaactcctacctgttttgacccacttcctacttcc |
2501562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 44355936 - 44355873
Alignment:
| Q |
146 |
atcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttcc |
209 |
Q |
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| T |
44355936 |
atcattatccgcatcaatcttaccacacttaactcctacctgttttgacccacttcctacttcc |
44355873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 232
Target Start/End: Original strand, 12780713 - 12780799
Alignment:
| Q |
146 |
atcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttggaatatt |
232 |
Q |
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||||||||| |||| ||||| |||| ||| |||||||| |||||| | | ||||||||||||||||||||||||| | |||||| |
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| T |
12780713 |
atcattaaccgcatttttcttaacacatctatctcctacatattttgaaccacttcctacttccccaccacttggtttcgaaatatt |
12780799 |
T |
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