View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7477_low_19 (Length: 239)
Name: NF7477_low_19
Description: NF7477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7477_low_19 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 24 - 239
Target Start/End: Original strand, 31264903 - 31265119
Alignment:
| Q |
24 |
cccaatttgtctcatattcactatataatcac-tgatctctctgaatgaaatatacaattcaggaaatcgtgagaatcttgactcatgagcatgagtttg |
122 |
Q |
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| T |
31264903 |
cccaatttgtctcatattcactatataatcacgtgatctctctgaaggaaatatacaattcaggaaatcgtgagaatcttgactcatgagcatgagtttg |
31265002 |
T |
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| Q |
123 |
atgtgaaatattttaaatctttggcatgctctaataaaattaaccagataaaaagtgcatttttcaactattttacaaatttgtcaccatttaatcttca |
222 |
Q |
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| T |
31265003 |
atgtggaatattttaaatctttggcatgctctaataaaattaactagataaaaagtgcatttttcaactattttacaaatttgtcaccatttaatcttca |
31265102 |
T |
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| Q |
223 |
gtttttagtttgtctct |
239 |
Q |
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||||||||||||||||| |
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| T |
31265103 |
gtttttagtttgtctct |
31265119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 22048767 - 22048710
Alignment:
| Q |
88 |
aatcgtgagaatcttgactcatgagcatgagtttgatgtgaaatattttaaatctttg |
145 |
Q |
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| T |
22048767 |
aatcatgagaatcttgactcattagcatgagtttgatgtggaataatgtaaatctttg |
22048710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 44359152 - 44359095
Alignment:
| Q |
88 |
aatcgtgagaatcttgactcatgagcatgagtttgatgtgaaatattttaaatctttg |
145 |
Q |
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| T |
44359152 |
aatcatgagaatcttgactcattagcatgagtttgatgtggaataatgtaaatctttg |
44359095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 79988 - 80044
Alignment:
| Q |
88 |
aatcgtgagaatcttgactcatgagcatgagtttgatgtgaaatattttaaatcttt |
144 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||| |||| | ||||||||| |
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| T |
79988 |
aatcatgagaatcttgactcattagcatgagtttgatgtggaataatgtaaatcttt |
80044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 13813921 - 13813863
Alignment:
| Q |
88 |
aatcgtgagaatcttgactcatgagcatgagtttgatgtgaaatattttaaatctttgg |
146 |
Q |
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|||| ||||||||||||| ||| ||||||||||||||||| |||| | ||||||||||| |
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| T |
13813921 |
aatcatgagaatcttgacccattagcatgagtttgatgtggaataatgtaaatctttgg |
13813863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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