View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7477_low_2 (Length: 566)

Name: NF7477_low_2
Description: NF7477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7477_low_2
NF7477_low_2
[»] chr1 (42 HSPs)
chr1 (24-287)||(37214800-37215065)
chr1 (353-553)||(37214532-37214732)
chr1 (124-244)||(32572936-32573057)
chr1 (128-244)||(40264048-40264165)
chr1 (148-244)||(34756465-34756562)
chr1 (125-245)||(23536090-23536211)
chr1 (148-244)||(50005117-50005214)
chr1 (148-244)||(38277453-38277550)
chr1 (148-245)||(15034697-15034795)
chr1 (148-245)||(4038098-4038196)
chr1 (148-233)||(28745835-28745920)
chr1 (124-230)||(5474437-5474549)
chr1 (159-245)||(27804288-27804375)
chr1 (126-244)||(27935502-27935620)
chr1 (128-196)||(15245460-15245529)
chr1 (126-226)||(17502222-17502323)
chr1 (160-244)||(44410361-44410446)
chr1 (125-193)||(48953584-48953652)
chr1 (148-230)||(45565432-45565515)
chr1 (182-244)||(25889182-25889243)
chr1 (179-245)||(30190206-30190272)
chr1 (128-233)||(45565429-45565535)
chr1 (128-233)||(5474417-5474523)
chr1 (148-245)||(15034682-15034780)
chr1 (128-230)||(17502198-17502301)
chr1 (126-192)||(32128046-32128113)
chr1 (125-226)||(34007355-34007452)
chr1 (128-193)||(41823149-41823215)
chr1 (128-193)||(50471768-50471834)
chr1 (193-245)||(34756450-34756502)
chr1 (124-163)||(15034783-15034822)
chr1 (124-163)||(30190260-30190299)
chr1 (128-226)||(34007382-34007476)
chr1 (125-163)||(24273258-24273296)
chr1 (180-226)||(47074177-47074223)
chr1 (193-233)||(6470684-6470724)
chr1 (193-245)||(24273218-24273270)
chr1 (193-245)||(26501077-26501129)
chr1 (148-188)||(29446788-29446828)
chr1 (193-245)||(44410334-44410386)
chr1 (134-193)||(44571226-44571285)
chr1 (193-245)||(47165210-47165262)
[»] chr3 (31 HSPs)
chr3 (125-244)||(46429411-46429531)
chr3 (148-244)||(31070444-31070541)
chr3 (153-244)||(47284269-47284361)
chr3 (124-245)||(27251908-27252030)
chr3 (128-245)||(28092237-28092355)
chr3 (128-244)||(39215857-39215973)
chr3 (148-245)||(44692860-44692958)
chr3 (128-230)||(332012-332116)
chr3 (148-245)||(9129382-9129480)
chr3 (148-245)||(9137489-9137587)
chr3 (128-230)||(25655335-25655438)
chr3 (148-233)||(44436296-44436382)
chr3 (157-244)||(42130716-42130804)
chr3 (148-244)||(5415807-5415904)
chr3 (124-245)||(44436281-44436408)
chr3 (125-230)||(25655312-25655418)
chr3 (177-233)||(39110429-39110485)
chr3 (134-173)||(27485478-27485517)
chr3 (128-193)||(2104752-2104818)
chr3 (158-245)||(46672770-46672852)
chr3 (124-196)||(47284188-47284261)
chr3 (193-245)||(31070429-31070481)
chr3 (129-196)||(38506861-38506929)
chr3 (123-163)||(47767427-47767467)
chr3 (126-184)||(331991-332049)
chr3 (125-159)||(28092211-28092245)
chr3 (199-245)||(31189400-31189446)
chr3 (125-163)||(36398026-36398064)
chr3 (128-193)||(54761552-54761618)
chr3 (126-163)||(46672840-46672877)
chr3 (193-233)||(21307529-21307569)
[»] chr4 (33 HSPs)
chr4 (126-244)||(26250933-26251052)
chr4 (148-244)||(15660207-15660304)
chr4 (148-244)||(10127998-10128095)
chr4 (153-244)||(42844586-42844678)
chr4 (148-245)||(857277-857375)
chr4 (144-244)||(11040991-11041092)
chr4 (153-244)||(41498533-41498625)
chr4 (148-233)||(1107087-1107173)
chr4 (156-245)||(28845917-28846007)
chr4 (179-245)||(49111382-49111448)
chr4 (148-245)||(7352850-7352948)
chr4 (180-226)||(46724195-46724241)
chr4 (124-193)||(42775619-42775689)
chr4 (199-244)||(31742800-31742845)
chr4 (200-244)||(4896672-4896716)
chr4 (148-206)||(36455945-36456004)
chr4 (128-245)||(14982303-14982420)
chr4 (177-230)||(4441396-4441449)
chr4 (125-193)||(53760779-53760848)
chr4 (129-184)||(4441412-4441468)
chr4 (148-226)||(14982318-14982396)
chr4 (126-206)||(12914060-12914141)
chr4 (198-245)||(1539664-1539711)
chr4 (193-244)||(4896716-4896767)
chr4 (134-193)||(46243086-46243144)
chr4 (148-245)||(7352835-7352933)
chr4 (136-193)||(17727091-17727149)
chr4 (180-222)||(32724961-32725003)
chr4 (126-163)||(31473847-31473884)
chr4 (126-163)||(36455905-36455942)
chr4 (126-163)||(49111436-49111473)
chr4 (201-245)||(15660275-15660319)
chr4 (126-193)||(56339149-56339217)
[»] chr7 (30 HSPs)
chr7 (148-245)||(5644715-5644813)
chr7 (148-245)||(29065857-29065955)
chr7 (128-243)||(46069404-46069523)
chr7 (148-244)||(21635909-21636006)
chr7 (124-233)||(40853983-40854094)
chr7 (148-232)||(44915231-44915316)
chr7 (148-233)||(40110775-40110862)
chr7 (148-233)||(2057430-2057516)
chr7 (148-233)||(49052820-49052906)
chr7 (128-207)||(31913236-31913316)
chr7 (155-245)||(34388310-34388401)
chr7 (125-193)||(32650588-32650657)
chr7 (148-245)||(43955555-43955650)
chr7 (125-193)||(13814969-13815038)
chr7 (129-193)||(30587878-30587943)
chr7 (193-245)||(5644700-5644752)
chr7 (193-245)||(29065842-29065894)
chr7 (123-163)||(34398973-34399013)
chr7 (123-193)||(30080776-30080847)
chr7 (148-245)||(40110760-40110859)
chr7 (125-163)||(28539192-28539230)
chr7 (148-233)||(46481984-46482069)
chr7 (126-163)||(26162161-26162198)
chr7 (126-163)||(35455802-35455839)
chr7 (134-193)||(14790138-14790197)
chr7 (193-245)||(26162121-26162173)
chr7 (193-245)||(31632745-31632797)
chr7 (193-245)||(35776939-35776991)
chr7 (198-242)||(43791116-43791160)
chr7 (193-233)||(46069426-46069466)
[»] chr2 (29 HSPs)
chr2 (124-245)||(14537222-14537344)
chr2 (148-244)||(41461539-41461636)
chr2 (124-230)||(11824718-11824825)
chr2 (148-226)||(27033528-27033607)
chr2 (134-230)||(3345769-3345867)
chr2 (148-245)||(14365723-14365820)
chr2 (148-245)||(784816-784914)
chr2 (175-245)||(11716431-11716501)
chr2 (183-243)||(44256181-44256241)
chr2 (148-230)||(10244215-10244298)
chr2 (175-230)||(11684656-11684711)
chr2 (124-193)||(8736430-8736500)
chr2 (128-184)||(11684674-11684731)
chr2 (125-196)||(21504465-21504537)
chr2 (193-245)||(41461599-41461651)
chr2 (134-192)||(11607245-11607304)
chr2 (124-193)||(32840181-32840251)
chr2 (134-230)||(11824704-11824801)
chr2 (124-230)||(3345783-3345891)
chr2 (201-245)||(17180320-17180364)
chr2 (126-193)||(20935723-20935790)
chr2 (134-192)||(11595343-11595402)
chr2 (193-232)||(11595355-11595394)
chr2 (125-163)||(1583847-1583885)
chr2 (148-192)||(14954343-14954388)
chr2 (134-167)||(19231301-19231334)
chr2 (193-233)||(11532251-11532291)
chr2 (193-233)||(27033525-27033565)
chr2 (153-193)||(39630268-39630308)
[»] chr6 (11 HSPs)
chr6 (148-244)||(9763050-9763147)
chr6 (148-243)||(6919733-6919828)
chr6 (148-230)||(9285685-9285768)
chr6 (148-245)||(776103-776201)
chr6 (128-245)||(9285670-9285788)
chr6 (128-192)||(1195351-1195416)
chr6 (193-245)||(9763035-9763087)
chr6 (124-163)||(9285643-9285682)
chr6 (128-193)||(8475179-8475245)
chr6 (394-476)||(31974768-31974850)
chr6 (126-163)||(33733430-33733467)
[»] chr8 (29 HSPs)
chr8 (148-244)||(3853654-3853751)
chr8 (148-244)||(3858112-3858209)
chr8 (148-244)||(13404851-13404948)
chr8 (128-226)||(42739949-42740048)
chr8 (148-245)||(17110892-17110990)
chr8 (127-245)||(30435269-30435386)
chr8 (191-245)||(40046872-40046926)
chr8 (188-244)||(37268086-37268142)
chr8 (125-193)||(34008796-34008865)
chr8 (124-245)||(42711300-42711416)
chr8 (124-193)||(29611384-29611454)
chr8 (128-230)||(38573433-38573541)
chr8 (148-230)||(14799999-14800081)
chr8 (128-193)||(30444932-30444998)
chr8 (148-228)||(33902705-33902786)
chr8 (125-173)||(7202924-7202972)
chr8 (128-180)||(14799979-14800031)
chr8 (134-193)||(26520438-26520498)
chr8 (148-245)||(17110907-17111005)
chr8 (148-207)||(4156228-4156288)
chr8 (128-183)||(7202865-7202921)
chr8 (129-193)||(34388527-34388591)
chr8 (125-163)||(29257399-29257437)
chr8 (193-245)||(3853639-3853691)
chr8 (193-245)||(3858097-3858149)
chr8 (193-245)||(9982659-9982711)
chr8 (201-245)||(13404919-13404963)
chr8 (193-245)||(23011757-23011809)
chr8 (201-245)||(40046827-40046871)
[»] chr5 (34 HSPs)
chr5 (134-244)||(28828373-28828482)
chr5 (148-244)||(15373984-15374081)
chr5 (153-244)||(32390015-32390107)
chr5 (153-245)||(2316421-2316515)
chr5 (163-244)||(6634039-6634120)
chr5 (148-233)||(9764376-9764462)
chr5 (148-245)||(20523156-20523254)
chr5 (148-230)||(40643856-40643938)
chr5 (128-193)||(22305112-22305178)
chr5 (125-193)||(33146188-33146257)
chr5 (128-196)||(15270837-15270906)
chr5 (128-183)||(2550328-2550384)
chr5 (148-231)||(40809378-40809462)
chr5 (148-242)||(32470920-32471015)
chr5 (175-245)||(16515027-16515097)
chr5 (136-196)||(17542344-17542405)
chr5 (148-245)||(32470905-32471003)
chr5 (125-167)||(33146058-33146100)
chr5 (124-245)||(40643832-40643953)
chr5 (124-173)||(22302535-22302584)
chr5 (125-193)||(28490008-28490076)
chr5 (125-173)||(34982303-34982351)
chr5 (198-245)||(2721560-2721607)
chr5 (124-163)||(22303905-22303944)
chr5 (134-192)||(28489487-28489546)
chr5 (193-244)||(37722889-37722940)
chr5 (148-233)||(23092000-23092086)
chr5 (148-233)||(32390007-32390093)
chr5 (148-196)||(3563315-3563364)
chr5 (129-193)||(12064454-12064519)
chr5 (126-163)||(22766950-22766987)
chr5 (193-245)||(3563300-3563352)
chr5 (193-245)||(26281264-26281316)
chr5 (193-245)||(40090409-40090461)
[»] scaffold1562 (1 HSPs)
scaffold1562 (148-245)||(443-541)
[»] scaffold1158 (1 HSPs)
scaffold1158 (148-245)||(2052-2150)
[»] scaffold0044 (1 HSPs)
scaffold0044 (148-233)||(56309-56395)
[»] scaffold0240 (1 HSPs)
scaffold0240 (125-206)||(17561-17643)
[»] scaffold0039 (1 HSPs)
scaffold0039 (126-193)||(109047-109115)
[»] scaffold0009 (2 HSPs)
scaffold0009 (193-245)||(42020-42072)
scaffold0009 (148-188)||(42035-42076)
[»] scaffold0169 (2 HSPs)
scaffold0169 (148-193)||(4113-4159)
scaffold0169 (193-233)||(4110-4150)
[»] scaffold0318 (1 HSPs)
scaffold0318 (148-193)||(2905-2950)
[»] scaffold0048 (2 HSPs)
scaffold0048 (193-245)||(82966-83018)
scaffold0048 (148-191)||(82981-83025)


Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 24 - 287
Target Start/End: Complemental strand, 37215065 - 37214800
Alignment:
Q  24 agatgcgatgtttggcttaggttggtttgatgatatatagcaatgacaagattccatgtgatataaaagatactcgtgtgg--aaaagacttccaaggtt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  37215065 agatgcgatgtttggcttaggttggtttgatgatatatagcaatgacaagattccatgtgatataaaagatactcgtgtgtgaaaaagacttccaaggtt 37214966  T
Q  122 tgccttagagtatgtttggatgggggaatgctttgagggaattcaactacttgaggtgaattctattgtttgaatccacctcaaaataattgaattccct 221  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37214965 tgccttagagtgtgtttggatgggagaatgttttgagggaattcaactacttgaggtgaattctattgtttgaatccacctcaaaataattgaattctct 37214866  T
Q  222 caaaacattacactacctcaaaacctttgaggtgatatcactgaagtgattgtttgacaaattttc 287  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37214865 caaaacattacattacctcaaaacctttgaggtgatatcactgaagtgattgtttgacaaattttc 37214800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 353 - 553
Target Start/End: Complemental strand, 37214732 - 37214532
Alignment:
Q  353 gtctaaataaaaaatcaatgacaacaaacccattggaagtgagctctcaacttgataatctcaaatgtttcagtttctgttaacaagacaaagaagaatg 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37214732 gtctaaataaaaaatcaatgacaacaaacccattggaagtgagctctcaacttgataatctcaaatgtttcagtttctgttaacaagacaaagaagaatg 37214633  T
Q  453 catgaagttctatttctgaattcaaaaaattcaaaggcccatgttataaaagaagtaatctggtaaccccctctgttgaattagataagtgtaatacata 552  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37214632 catgaagttctatttctgaattcaaaaaattcaaaggcccatgttataaaagaagtaatctggtaaccccctctgttgaattagataagtgtaatacata 37214533  T
Q  553 t 553  Q
    |    
T  37214532 t 37214532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 124 - 244
Target Start/End: Original strand, 32572936 - 32573057
Alignment:
Q  124 ccttagagtatgtttggatgggggaatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctc 222  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32572936 ccttagagtgtgtttggatgggggaatgttttgagggaattcaactactttgaggtgaattctattgtttgaatccacctcaaaagaattgaattccctc 32573035  T
Q  223 aaaacattacactacctcaaaa 244  Q
    ||||||||||| ||||||||||    
T  32573036 aaaacattacattacctcaaaa 32573057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 128 - 244
Target Start/End: Original strand, 40264048 - 40264165
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaa 226  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40264048 agagtgtgtttggataggggaatgttttgagggaattcaactactttgagatgaattctattgtttgaatccacctcaaaataattgaattccctcaaaa 40264147  T
Q  227 cattacactacctcaaaa 244  Q
    ||||||| ||||||||||    
T  40264148 cattacattacctcaaaa 40264165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 34756465 - 34756562
Alignment:
Q  148 aatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  34756465 aatgttttgagggaattcaactactttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattatattacctcaaaa 34756562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 125 - 245
Target Start/End: Complemental strand, 23536211 - 23536090
Alignment:
Q  125 cttagagtatgtttggatgggggaatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctca 223  Q
    |||||| | |||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||||| ||||||||| || |||||||||||||    
T  23536211 cttagaatgtgtttggatgggggaatgttttgagggaattcaactactttaaggtgaattatattgtttgaattcacctcaaagtagttgaattccctca 23536112  T
Q  224 aaacattacactacctcaaaac 245  Q
    |||||||||| | |||||||||    
T  23536111 aaacattacattccctcaaaac 23536090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 50005117 - 50005214
Alignment:
Q  148 aatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    |||| |||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50005117 aatgttttgagcgaattcaacttctttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacattacctcaaaa 50005214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 38277453 - 38277550
Alignment:
Q  148 aatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    |||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38277453 aatgttttgaaggaattcaactactttgaggtgaattatattgtttaaatccacctcaaaataattgaattccctcaaaacattacattacctcaaaa 38277550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 15034697 - 15034795
Alignment:
Q  148 aatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| | |||||||||    
T  15034697 aatgttttgagggaattcaactactttaaggtgaattctattgtttgaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaac 15034795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 4038196 - 4038098
Alignment:
Q  148 aatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||||||  ||||||||| || ||||||||||||||||||||||| | |||||||||    
T  4038196 aatgttttgagggaattcaactactttaaggtgaattctattgtttgaactcacctcaaagtagttgaattccctcaaaacattacattccctcaaaac 4038098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 28745835 - 28745920
Alignment:
Q  148 aatgctttgagggaattcaactacttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattaca 233  Q
    |||| ||||||||||||||| || || |||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||    
T  28745835 aatggtttgagggaattcaattatttaaggtgaattctattgtttgaattcacctcaaaatagttgaattccctcaaaatattaca 28745920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 5474549 - 5474437
Alignment:
Q  124 ccttagagtatgtttggatgggggaatgc-----tttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaatt 217  Q
    ||||||||| ||||||||| ||||||||      ||||||||||||||||||||| | ||||||||||||||||||||| ||| ||||| ||||| ||||    
T  5474549 ccttagagtgtgtttggataggggaatgtaatgttttgagggaattcaactactttaaggtgaattctattgtttgaattcacttcaaagtaattaaatt 5474450  T
Q  218 ccctcaaaacatt 230  Q
    |||||||||||||    
T  5474449 ccctcaaaacatt 5474437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 159 - 245
Target Start/End: Complemental strand, 27804375 - 27804288
Alignment:
Q  159 ggaattcaactacttgaggt-gaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    ||||||||||||||| | || |||||||||||||||||| |||||||||||| |||||||||||||||| |||||| | |||||||||    
T  27804375 ggaattcaactactttaagttgaattctattgtttgaattcacctcaaaatagttgaattccctcaaaatattacattccctcaaaac 27804288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 126 - 244
Target Start/End: Original strand, 27935502 - 27935620
Alignment:
Q  126 ttagagtatgtttggatgggggaatgctttgagggaattcaactacttg-aggtgaattctattgtttgaatccacctcaaaataattgaattccctcaa 224  Q
    ||||||| ||||||||||||  |||| ||||||  |||||||||||||  |||||||||||||||||||||| || |||||| || ||||||| ||||||    
T  27935502 ttagagtgtgtttggatggga-aatgttttgagaaaattcaactactttcaggtgaattctattgtttgaattcaactcaaagtagttgaatttcctcaa 27935600  T
Q  225 aacattacactacctcaaaa 244  Q
    ||||||||| | ||||||||    
T  27935601 aacattacattccctcaaaa 27935620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 15245460 - 15245529
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttgaat 196  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||    
T  15245460 agagtgtgtttggatgggggaatgttttgagggaattcaactactttaaggtgaattctattgtttgaat 15245529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 17502323 - 17502222
Alignment:
Q  126 ttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaa 224  Q
    ||||||| ||||| ||| |||||||| ||||||||||||||||||| || || ||||||||||| ||||||| ||||||||| || |||||||| |||||    
T  17502323 ttagagtgtgttttgattggggaatgttttgagggaattcaactactttaagttgaattctattatttgaattcacctcaaagtagttgaattctctcaa 17502224  T
Q  225 aa 226  Q
    ||    
T  17502223 aa 17502222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 44410361 - 44410446
Alignment:
Q  160 gaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    ||||||||||| || ||||||||||||||||| |||||||||   |||||||||||||||||||||||| ||||| ||||||||||    
T  44410361 gaattcaactattttgaggtgaattctattgtctgaatccactcaaaaataattgaattccctcaaaactttacattacctcaaaa 44410446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 48953584 - 48953652
Alignment:
Q  125 cttagagtatgtttggatgggggaatgctttgagggaattcaactacttgaggtgaattctattgtttg 193  Q
    |||||||| |||||||||||||||||| ||||| ||||||||| || ||||||||||||||||||||||    
T  48953584 cttagagtgtgtttggatgggggaatgttttgaaggaattcaaatatttgaggtgaattctattgtttg 48953652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 45565432 - 45565515
Alignment:
Q  148 aatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacatt 230  Q
    |||| |||||||||||||||||| || | ||||||||||||||||| ||| ||||||||| || ||||||||||||||||||||    
T  45565432 aatgttttgagggaattcaactattttaaggtgaattctattgtttaaattcacctcaaagtagttgaattccctcaaaacatt 45565515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 25889243 - 25889182
Alignment:
Q  182 ttctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||    
T  25889243 ttctattgtttgaatccacctcaaaataattgaattccttcaaaacatta-attacctcaaaa 25889182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 30190206 - 30190272
Alignment:
Q  179 gaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||| | |||||||||    
T  30190206 gaattctattgtttgaattcacctcaaaatagttgaattacctcaaaacattacattccctcaaaac 30190272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 128 - 233
Target Start/End: Complemental strand, 45565535 - 45565429
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaa 226  Q
    ||||| |||||||||||  ||||| ||||||||||||||||||| ||||||||||||  |    | |||| ||||| |||||| ||||||||||||||||    
T  45565535 agagtgtgtttggatggaagaatgttttgagggaattcaactactttgaggtgaatttaaacaatagaattcaccttaaaatagttgaattccctcaaaa 45565436  T
Q  227 cattaca 233  Q
    |||||||    
T  45565435 cattaca 45565429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 128 - 233
Target Start/End: Original strand, 5474417 - 5474523
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaa 226  Q
    ||||| |||||||||||||||||| |||||||||||| || ||| |||| |||||||| |    | |||| ||||| ||| || ||||||||||||||||    
T  5474417 agagtgtgtttggatgggggaatgttttgagggaatttaattactttgaagtgaattcaaacaatagaattcaccttaaagtagttgaattccctcaaaa 5474516  T
Q  227 cattaca 233  Q
    |||||||    
T  5474517 cattaca 5474523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 15034780 - 15034682
Alignment:
Q  148 aatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||||||||||||||| ||||||||||| |    | |||| ||||| ||| || ||||||||||||||||||||||| | |||||||||    
T  15034780 aatgttttgagggaattcaactactttgaggtgaattcaaacaatagaattcaccttaaagtagttgaattccctcaaaacattacattccctcaaaac 15034682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 230
Target Start/End: Original strand, 17502198 - 17502301
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaa 226  Q
    ||||| |||||||||| ||||||  |||||| |||||||||||| ||||||||||||| | |  | |||| || || ||| || ||||||||||||||||    
T  17502198 agagtgtgtttggatgagggaatattttgagagaattcaactactttgaggtgaattcaaataatagaattcaacttaaagtagttgaattccctcaaaa 17502297  T
Q  227 catt 230  Q
    ||||    
T  17502298 catt 17502301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 32128046 - 32128113
Alignment:
Q  126 ttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgttt 192  Q
    ||||||| ||||| |||||||||||| ||||||||||||||| ||| ||| ||||||||| |||||||    
T  32128046 ttagagtgtgtttagatgggggaatgttttgagggaattcaaatactttgtggtgaattccattgttt 32128113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 34007355 - 34007452
Alignment:
Q  125 cttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctca 223  Q
    |||||||| ||||||||||||| |||  ||||||||||||||||||| ||||| |||||||      |||||| || |||||| || |||||||||||||    
T  34007355 cttagagtgtgtttggatggggaaatattttgagggaattcaactactttgagttgaattc-----attgaattcaactcaaagtagttgaattccctca 34007449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 41823215 - 41823149
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaacta-cttgaggtgaattctattgtttg 193  Q
    ||||| |||||||||||||||||| ||||| ||||||||| || |||||| ||||||| ||||||||    
T  41823215 agagtgtgtttggatgggggaatgttttgaaggaattcaaataccttgagatgaattccattgtttg 41823149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 50471768 - 50471834
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    ||||| |||||||||||||||| | ||||||||||||||| ||| || ||||||||| |||||||||    
T  50471768 agagtgtgtttggatgggggaaagttttgagggaattcaaatactttcaggtgaattttattgtttg 50471834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 34756502 - 34756450
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||| || ||||||||||||||||||||||| | |||||||||    
T  34756502 gaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaac 34756450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 15034822 - 15034783
Alignment:
Q  124 ccttagagtatgtttggatgggggaatgctttgagggaat 163  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  15034822 ccttagagtgtgtttggatgggggaatgttttgagggaat 15034783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 30190299 - 30190260
Alignment:
Q  124 ccttagagtatgtttggatgggggaatgctttgagggaat 163  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  30190299 ccttagagtgtgtttggatgggggaatgttttgagggaat 30190260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 226
Target Start/End: Complemental strand, 34007476 - 34007382
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaa 226  Q
    ||||| ||||||||||||| |||  ||||||||||||||||||| ||||| ||||||| |     ||||| || |||||| || ||||||||||||||||    
T  34007476 agagtgtgtttggatggggaaatattttgagggaattcaactactttgagttgaattcaa-----tgaattcaactcaaagtagttgaattccctcaaaa 34007382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 24273296 - 24273258
Alignment:
Q  125 cttagagtatgtttggatgggggaatgctttgagggaat 163  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  24273296 cttagagtgtgtttggatgggggaatgttttgagggaat 24273258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 47074223 - 47074177
Alignment:
Q  180 aattctattgtttgaatccacctcaaaataattgaattccctcaaaa 226  Q
    ||||||||||||||||| ||||||||| || ||||||||| ||||||    
T  47074223 aattctattgtttgaattcacctcaaagtagttgaattccttcaaaa 47074177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 6470684 - 6470724
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattaca 233  Q
    ||||||||||||||  | |||||||||||||||||||||||    
T  6470684 gaatccacctcaaagaatttgaattccctcaaaacattaca 6470724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 24273218 - 24273270
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||| || ||||||||||||| ||||||||| | |||||||||    
T  24273218 gaattcacctcaaagtatttgaattccctcataacattacattccctcaaaac 24273270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 26501077 - 26501129
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||| ||||| || ||||||||||||||||||||||| | |||||||||    
T  26501077 gaattcacatcaaagtatttgaattccctcaaaacattacattccctcaaaac 26501129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 29446788 - 29446828
Alignment:
Q  148 aatgctttgagggaattcaactacttgaggtgaattctatt 188  Q
    |||| |||||||||||||||||| || ||||||||||||||    
T  29446788 aatgttttgagggaattcaactatttaaggtgaattctatt 29446828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 44410386 - 44410334
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| |||||||||||| |||||||| || ||||||||||| | |||||||||    
T  44410386 gaattcacctcaaaatagttgaattcgcttaaaacattacattccctcaaaac 44410334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 44571226 - 44571285
Alignment:
Q  134 tgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    ||||||||||||| |||| ||||||||||||||| ||| |||| |||||||| ||||||||    
T  44571226 tgtttggatgggg-aatgttttgagggaattcaaatactttgaagtgaattccattgtttg 44571285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 47165210 - 47165262
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||| ||| || ||||||||||||||||||||||| | |||||||||    
T  47165210 gaattcaccttaaagtatttgaattccctcaaaacattacatttcctcaaaac 47165262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 5e-45; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 125 - 244
Target Start/End: Original strand, 46429411 - 46429531
Alignment:
Q  125 cttagagtatgtttggatgggggaatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctca 223  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||    
T  46429411 cttagagtgtgtttggatgggggaatgttttgagggaattcaactactttaaggtgaattctattgtttgaatccacctcaaaataattgaattccttca 46429510  T
Q  224 aaacattacactacctcaaaa 244  Q
    |||||||||| ||||||||||    
T  46429511 aaacattacattacctcaaaa 46429531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 31070444 - 31070541
Alignment:
Q  148 aatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31070444 aatgttttgagggaattcaactactttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacattacctcaaaa 31070541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 153 - 244
Target Start/End: Original strand, 47284269 - 47284361
Alignment:
Q  153 tttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    |||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  47284269 tttgagggaattcagctactttgaggtgaattctattgtttgaatcaacctcaaaataattgaattccctcaaaacattacattacctcaaaa 47284361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 27251908 - 27252030
Alignment:
Q  124 ccttagagtatgtttggatgggggaatgctttgagggaattcaactacttgaggt-gaattctattgtttgaatccacctcaaaataattgaattccctc 222  Q
    ||||||| | |||||||||||||||||| ||| ||||||||||||||||| | || |||||||||||||||||| ||||||||| || ||||||||||||    
T  27251908 ccttagaatgtgtttggatgggggaatgttttaagggaattcaactactttaagttgaattctattgtttgaattcacctcaaagtagttgaattccctc 27252007  T
Q  223 aaaacattacactacctcaaaac 245  Q
    ||||||||||| | |||||||||    
T  27252008 aaaacattacattccctcaaaac 27252030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 28092355 - 28092237
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaa 226  Q
    ||||| |||||  ||||||||||| |||||||||||||||||  || ||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  28092355 agagtgtgtttaaatgggggaatgttttgagggaattcaactgttttgaggtgaattctattgtttgaattcacctcaaagtaattgaattccctcaaaa 28092256  T
Q  227 cattacactacctcaaaac 245  Q
    ||| ||| | |||||||||    
T  28092255 catcacatttcctcaaaac 28092237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 128 - 244
Target Start/End: Original strand, 39215857 - 39215973
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaa 226  Q
    ||||| ||||||||||||| |||  ||| ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||  |||||||    
T  39215857 agagtgtgtttggatgggg-aatatttttagggaattcaattactttgaggtgaattttattgtttgaatccacctcaaaataattgaattttctcaaaa 39215955  T
Q  227 cattacactacctcaaaa 244  Q
    ||||| | ||||||||||    
T  39215956 cattatattacctcaaaa 39215973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 44692860 - 44692958
Alignment:
Q  148 aatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| |||||||||||||||| |||| | ||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| | |||||||||    
T  44692860 aatgttttgagggaattcaaccactttaaggtgaattctattgtttgaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaac 44692958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 128 - 230
Target Start/End: Complemental strand, 332116 - 332012
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattg-tttgaatccacctcaaaataattgaattccctcaaa 225  Q
    ||||| |||||||||||  ||||| ||||||||||||||||||| || ||||||||||||||| ||||||| ||||||||| || |||||||||||||||    
T  332116 agagtgtgtttggatggaagaatgttttgagggaattcaactactttaaggtgaattctattgttttgaattcacctcaaagtagttgaattccctcaaa 332017  T
Q  226 acatt 230  Q
    |||||    
T  332016 acatt 332012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 9129382 - 9129480
Alignment:
Q  148 aatgctttgagggaattcaactacttgaggt-gaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||| ||||||||||||||| | || |||||||||||||||||| ||||||||| || ||||||||||||||||||||||| | |||||||||    
T  9129382 aatgttttgatggaattcaactactttaagttgaattctattgtttgaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaac 9129480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 9137489 - 9137587
Alignment:
Q  148 aatgctttgagggaattcaactacttgaggt-gaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||| ||||||||||||||| | || |||||||||||||||||| ||||||||| || ||||||||||||||||||||||| | |||||||||    
T  9137489 aatgttttgatggaattcaactactttaagttgaattctattgtttgaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaac 9137587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 128 - 230
Target Start/End: Complemental strand, 25655438 - 25655335
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactacttgaggt-gaattctattgtttgaatccacctcaaaataattgaattccctcaaaa 226  Q
    ||||| ||||||||||||| |||| ||||| ||||||||||||||| | || |||||||||| ||||||| || |||||| || ||||||||||||||||    
T  25655438 agagtgtgtttggatggggaaatgttttgacggaattcaactactttaagttgaattctattatttgaattcaactcaaagtagttgaattccctcaaaa 25655339  T
Q  227 catt 230  Q
    ||||    
T  25655338 catt 25655335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 44436296 - 44436382
Alignment:
Q  148 aatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattaca 233  Q
    |||| ||||||| |||||||||| || | ||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||    
T  44436296 aatgttttgaggaaattcaactattttaaggtgaattctattgtttgaattcacctcaaagtagttgaattccctcaaaacattaca 44436382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 42130804 - 42130716
Alignment:
Q  157 agggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    ||||||||||| ||||| ||||||||||||| | ||||||||||| | || |||||||||||||||||||||||||||  |||||||||    
T  42130804 agggaattcaattactttgaggtgaattctactctttgaatccacttaaagataattgaattccctcaaaacattacatcacctcaaaa 42130716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 5415904 - 5415807
Alignment:
Q  148 aatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    |||| ||||| ||||||||||||||| | |||||||||||||||||| |  ||||| ||| || ||||||||||||||||||||||| | ||||||||    
T  5415904 aatgttttgatggaattcaactactttaaggtgaattctattgtttgtactcaccttaaagtagttgaattccctcaaaacattacattccctcaaaa 5415807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 124 - 245
Target Start/End: Complemental strand, 44436408 - 44436281
Alignment:
Q  124 ccttagagtatgtttggatgggggaatgc-----tttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaatt 217  Q
    ||||||||| ||||||||||||| ||||      ||||||||||||||||||||| ||||||||||| |    | |||| ||||| |||||| |||||||    
T  44436408 ccttagagtgtgtttggatggggaaatgtaatgttttgagggaattcaactactttgaggtgaattcaaacaatagaattcaccttaaaatagttgaatt 44436309  T
Q  218 ccctcaaaacattacactacctcaaaac 245  Q
     ||||||||||||||| | |||||||||    
T  44436308 tcctcaaaacattacattccctcaaaac 44436281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 125 - 230
Target Start/End: Original strand, 25655312 - 25655418
Alignment:
Q  125 cttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctca 223  Q
    |||||||| ||||||||||||| |||| ||||||||||||||||||| ||||| ||||||| | |  | |||| || || ||| || ||||||||| |||    
T  25655312 cttagagtgtgtttggatggggaaatgttttgagggaattcaactactttgagttgaattcaaataatagaattcaacttaaagtagttgaattccgtca 25655411  T
Q  224 aaacatt 230  Q
    |||||||    
T  25655412 aaacatt 25655418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 39110485 - 39110429
Alignment:
Q  177 gtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattaca 233  Q
    |||||||||||||||||||| || |||||| || |||||||||| ||||||||||||    
T  39110485 gtgaattctattgtttgaattcaactcaaagtagttgaattcccacaaaacattaca 39110429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 134 - 173
Target Start/End: Original strand, 27485478 - 27485517
Alignment:
Q  134 tgtttggatgggggaatgctttgagggaattcaactactt 173  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  27485478 tgtttggatgggggaatgttttgagggaattcaactactt 27485517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 2104752 - 2104818
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    ||||| ||||||||| |||||||| || |||||||||||| ||| |||| |||||||||||||||||    
T  2104752 agagtgtgtttggataggggaatgtttcgagggaattcaaatactttgatgtgaattctattgtttg 2104818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 245
Target Start/End: Original strand, 46672770 - 46672852
Alignment:
Q  158 gggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||||||||||||||| ||||||||||| |      |||| ||||||||| || ||||||||||||||||||||||| | |||||||||    
T  46672770 gggaattcaactactttgaggtgaattcaa------gaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaac 46672852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 47284261 - 47284188
Alignment:
Q  124 ccttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttgaat 196  Q
    ||||||||| |||||||||| ||||||  ||||||||||||||| ||| ||||  ||||||| |||||||||||    
T  47284261 ccttagagtgtgtttggatgagggaatattttgagggaattcaaatactttgatatgaattccattgtttgaat 47284188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 31070481 - 31070429
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||| || ||||||||||||||||||||||| | |||||||||    
T  31070481 gaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaac 31070429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 38506929 - 38506861
Alignment:
Q  129 gagtatgtttggatgggggaatgctttgagggaattcaact-acttgaggtgaattctattgtttgaat 196  Q
    |||| ||||||||| | |||||| ||||||||||||||| | | ||||||||||||| |||||||||||    
T  38506929 gagtgtgtttggatagaggaatgttttgagggaattcaaataatttgaggtgaattccattgtttgaat 38506861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 47767427 - 47767467
Alignment:
Q  123 gccttagagtatgtttggatgggggaatgctttgagggaat 163  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  47767427 gccttagagtgtgtttggatgggggaatgttttgagggaat 47767467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 331991 - 332049
Alignment:
Q  126 ttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattc 184  Q
    ||||||| ||||||||||| | |||| ||||||||||||||||||| |||||||||||||    
T  331991 ttagagtgtgtttggatggag-aatgttttgagggaattcaactactttgaggtgaattc 332049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 159
Target Start/End: Original strand, 28092211 - 28092245
Alignment:
Q  125 cttagagtatgtttggatgggggaatgctttgagg 159  Q
    ||||||||||||||||||||||||||| |||||||    
T  28092211 cttagagtatgtttggatgggggaatgttttgagg 28092245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 31189400 - 31189446
Alignment:
Q  199 acctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||||||| || |||||||| |||||||||||||| |||||||||||    
T  31189400 acctcaaagtatttgaattctctcaaaacattacattacctcaaaac 31189446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 36398064 - 36398026
Alignment:
Q  125 cttagagtatgtttggatgggggaatgctttgagggaat 163  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  36398064 cttagagtgtgtttggatgggggaatgttttgagggaat 36398026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 54761618 - 54761552
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    ||||| ||||||||||| |||||| ||||||||||||||| ||| |||| || ||||| ||||||||    
T  54761618 agagtgtgtttggatggaggaatgttttgagggaattcaaatactttgatgtaaattccattgtttg 54761552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 46672877 - 46672840
Alignment:
Q  126 ttagagtatgtttggatgggggaatgctttgagggaat 163  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  46672877 ttagagtgtgtttggatgggggaatgttttgagggaat 46672840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 21307529 - 21307569
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattaca 233  Q
    |||| ||||||||| || |||||||||||||||||||||||    
T  21307529 gaattcacctcaaagtatttgaattccctcaaaacattaca 21307569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 126 - 244
Target Start/End: Complemental strand, 26251052 - 26250933
Alignment:
Q  126 ttagagtatgtttggatgggggaatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaa 224  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  26251052 ttagagtgtgtttggatgggggaatgttttgagggaattcaactactttgaggtgaattctattatttgaatccacctcaaaataattgaatttcctcaa 26250953  T
Q  225 aacattacactacctcaaaa 244  Q
    ||||||||| ||||||||||    
T  26250952 aacattacattacctcaaaa 26250933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 15660304 - 15660207
Alignment:
Q  148 aatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    |||| ||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  15660304 aatgttttgagggaattcaactactttgagctgaattctattgtttgaatccatctcaaaataattgaattccctcaaaacattacattacctcaaaa 15660207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 10128095 - 10127998
Alignment:
Q  148 aatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    |||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||    
T  10128095 aatgttttgagggaattcaactactttgagatgaattctattgtttgaatccacctcaaaataattgaattccttcaaaacattacattacttcaaaa 10127998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 153 - 244
Target Start/End: Original strand, 42844586 - 42844678
Alignment:
Q  153 tttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||    
T  42844586 tttgaaggaattcaactactttgaggtgaattctattgtttgaatccacttcaaaataattgatttccctcaaaacattacattacctcaaaa 42844678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 857277 - 857375
Alignment:
Q  148 aatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||||||| || |||||| || ||||||||||||||||||||||| | |||||||||    
T  857277 aatgttttgagggaattcaactactttaaggtgaattctattgtttgaattcaactcaaagtagttgaattccctcaaaacattacattccctcaaaac 857375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 144 - 244
Target Start/End: Complemental strand, 11041092 - 11040991
Alignment:
Q  144 ggggaatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaa 242  Q
    |||||||| ||||||||||||||||||||| | |||||||||||||||||| || ||||||||| || |||||||| |||||||||||||| | ||||||    
T  11041092 ggggaatgttttgagggaattcaactactttatggtgaattctattgtttggattcacctcaaagtagttgaattctctcaaaacattacattccctcaa 11040993  T
Q  243 aa 244  Q
    ||    
T  11040992 aa 11040991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 153 - 244
Target Start/End: Original strand, 41498533 - 41498625
Alignment:
Q  153 tttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    |||||||||||||||| |||| | ||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| | ||||||||    
T  41498533 tttgagggaattcaaccactttaaggtgaattctattgtttaaattcacctcaaaataattgaattccttcaaaacattacattccctcaaaa 41498625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 1107173 - 1107087
Alignment:
Q  148 aatgctttgagggaattcaactact-tgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattaca 233  Q
    |||| |||||||||||||||||||| | |||||||||||||||||||||| || |||||| || ||||||||| |||||||||||||    
T  1107173 aatgttttgagggaattcaactactctaaggtgaattctattgtttgaattcatctcaaagtagttgaattccttcaaaacattaca 1107087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 28845917 - 28846007
Alignment:
Q  156 gagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||||||||||||||||| | ||||||||||||||||||||| || |||||| || ||||||||||||||||||||| | | |||||||||    
T  28845917 gagggaattcaactactttaaggtgaattctattgtttgaattcaactcaaagtagttgaattccctcaaaacattatattccctcaaaac 28846007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 49111382 - 49111448
Alignment:
Q  179 gaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||| | |||||||||    
T  49111382 gaattctattgtttgaattcacctcaaaatagttgaattccctcaaaacattacattccctcaaaac 49111448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 7352850 - 7352948
Alignment:
Q  148 aatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||| |||||||||||| || | ||||||||||||||||||||| ||  ||||| || ||||||||||||||||||||||| | |||||||||    
T  7352850 aatgttttgatggaattcaactattttaaggtgaattctattgtttgaattcaattcaaagtagttgaattccctcaaaacattacattccctcaaaac 7352948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 46724195 - 46724241
Alignment:
Q  180 aattctattgtttgaatccacctcaaaataattgaattccctcaaaa 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  46724195 aattctattgtttgaatccacctcaaaataattgaattccctcaaaa 46724241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 42775619 - 42775689
Alignment:
Q  124 ccttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    ||||| ||| |||||||||||||||||| ||||||||||||||| ||| ||||||||||||| ||||||||    
T  42775619 ccttaaagtgtgtttggatgggggaatgttttgagggaattcaaatactttgaggtgaattccattgtttg 42775689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 31742845 - 31742800
Alignment:
Q  199 acctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  31742845 acctcaaaataattgaattccctcaaaacattacactaccttaaaa 31742800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 4896716 - 4896672
Alignment:
Q  200 cctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  4896716 cctcaaaataattgaattccctcaaaacattacattacctcaaaa 4896672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 36455945 - 36456004
Alignment:
Q  148 aatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaa 206  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||||||| |||||||||    
T  36455945 aatgttttgagggaattcaactactttaaggtgaattctattgtttgaattcacctcaaa 36456004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 14982420 - 14982303
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaa 226  Q
    ||||| |||||||||||||||||  ||||||||||||||||||| ||||||||||||| |    |  ||| ||||| ||| || || |||||||||||||    
T  14982420 agagtgtgtttggatgggggaatcttttgagggaattcaactactttgaggtgaattc-aaaaataaaattcaccttaaagtagttaaattccctcaaaa 14982322  T
Q  227 cattacactacctcaaaac 245  Q
    ||||||| | |||||||||    
T  14982321 cattacattccctcaaaac 14982303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 4441396 - 4441449
Alignment:
Q  177 gtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacatt 230  Q
    |||||||||||||||||||| ||||||||| || ||||||| ||||||||||||    
T  4441396 gtgaattctattgtttgaattcacctcaaagtagttgaatttcctcaaaacatt 4441449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 53760848 - 53760779
Alignment:
Q  125 cttagagtatgtttggatgggggaatgctttgagggaattcaacta-cttgaggtgaattctattgtttg 193  Q
    |||||||| |||||| ||||||||||| ||||||||||||||| ||  |||| |||||||||||||||||    
T  53760848 cttagagtgtgtttgaatgggggaatgttttgagggaattcaaatattttgatgtgaattctattgtttg 53760779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 4441468 - 4441412
Alignment:
Q  129 gagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattc 184  Q
    |||| |||||||||||||||||| ||||||| ||||||||||| |||||||||||||    
T  4441468 gagtgtgtttggatgggggaatgttttgaggaaattcaactactttgaggtgaattc 4441412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 14982318 - 14982396
Alignment:
Q  148 aatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaa 226  Q
    |||| |||||||||||| |||||||| | |||||||| |||| ||||||| ||||||||| || ||||||||||||||||    
T  14982318 aatgttttgagggaatttaactactttaaggtgaattttatt-tttgaattcacctcaaagtagttgaattccctcaaaa 14982396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 12914141 - 12914060
Alignment:
Q  126 ttagagtatgtttggatgggggaatgctttgagggaattcaacta-cttgaggtgaattctattgtttgaatccacctcaaa 206  Q
    ||||||| |||||||||| |  |||| ||||||||||||||||||  || || |||||| |||||||||||| |||||||||    
T  12914141 ttagagtgtgtttggatgagaaaatgttttgagggaattcaactattttaagatgaattttattgtttgaattcacctcaaa 12914060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 1539711 - 1539664
Alignment:
Q  198 cacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    ||||||||| || ||||||||||||||||||||||| | |||||||||    
T  1539711 cacctcaaagtatttgaattccctcaaaacattacattccctcaaaac 1539664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 4896716 - 4896767
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    |||| ||||||||| || ||||||||||||||||||||||| | ||||||||    
T  4896716 gaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaa 4896767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 46243144 - 46243086
Alignment:
Q  134 tgtttggatgggggaatgctttgagggaattcaactacttgaggtgaattctattgtttg 193  Q
    |||||||||||||||||| |||||| |||||||| || ||||||| ||||| ||||||||    
T  46243144 tgtttggatgggggaatgttttgagagaattcaaatatttgaggt-aattccattgtttg 46243086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 7352933 - 7352835
Alignment:
Q  148 aatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||||||||||||||| ||  ||||||| |    | |||| ||||| |||||| ||||||||| ||||||||||||| | |||||||||    
T  7352933 aatgttttgagggaattcaactactttgaattgaattcaaacaatagaattcaccttaaaatagttgaattccatcaaaacattacattccctcaaaac 7352835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 17727091 - 17727149
Alignment:
Q  136 tttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    |||||||||||||||| |||| |||||||||| ||| ||||||||||||  ||||||||    
T  17727091 tttggatgggggaatgttttgtgggaattcaaatactttgaggtgaatttcattgtttg 17727149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 32725003 - 32724961
Alignment:
Q  180 aattctattgtttgaatccacctcaaaataattgaattccctc 222  Q
    ||||||||||||||||  ||||||||| |||||||||||||||    
T  32725003 aattctattgtttgaactcacctcaaagtaattgaattccctc 32724961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 31473847 - 31473884
Alignment:
Q  126 ttagagtatgtttggatgggggaatgctttgagggaat 163  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  31473847 ttagagtgtgtttggatgggggaatgttttgagggaat 31473884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 36455905 - 36455942
Alignment:
Q  126 ttagagtatgtttggatgggggaatgctttgagggaat 163  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  36455905 ttagagtgtgtttggatgggggaatgttttgagggaat 36455942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 49111473 - 49111436
Alignment:
Q  126 ttagagtatgtttggatgggggaatgctttgagggaat 163  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  49111473 ttagagtgtgtttggatgggggaatgttttgagggaat 49111436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 15660275 - 15660319
Alignment:
Q  201 ctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||||| || ||||||||||||||||||||||| | |||||||||    
T  15660275 ctcaaagtagttgaattccctcaaaacattacattccctcaaaac 15660319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 56339149 - 56339217
Alignment:
Q  126 ttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    ||||||| ||||||||||  |||||| ||||||||||||||| ||| |||| |||||||  ||||||||    
T  56339149 ttagagtgtgtttggatgatggaatgttttgagggaattcaaatactttgatgtgaatttcattgtttg 56339217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 5644715 - 5644813
Alignment:
Q  148 aatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5644715 aatgttttgagggaattcaactactttgaggtgaattctattgtttgaacccacctcaaaataattgaattccctcaaaacattacattacctcaaaac 5644813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 29065857 - 29065955
Alignment:
Q  148 aatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  29065857 aatgttttgagggaattcaactactttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacattaccttaaaac 29065955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 128 - 243
Target Start/End: Original strand, 46069404 - 46069523
Alignment:
Q  128 agagtatgtttggatgggggaatgc-----tttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccct 221  Q
    ||||| ||||||||||||||||||      ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  46069404 agagtgtgtttggatgggggaatgtaatgttttgagggaattcaactactttgaggtgaattctattgtttgaatccatctcaaaataattgaattccct 46069503  T
Q  222 caaaacattacactacctcaaa 243  Q
    |  ||||||||| |||||||||    
T  46069504 c--aacattacattacctcaaa 46069523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 21636006 - 21635909
Alignment:
Q  148 aatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    |||| ||||| |||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  21636006 aatgttttgaaggaatttaactactttgagatgaattctattgtttgaatccacctcaaaataattgaatcccctcaaaacattacattacctcaaaa 21635909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 40853983 - 40854094
Alignment:
Q  124 ccttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttgaatccacctcaaaataattgaatt-ccct 221  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||| || |||||| || ||||||| ||||    
T  40853983 ccttagagtgtgtttggatgggggaatgttttgagggaattcaactactttaaggtgaattctattgtttgaattcaactcaaagtagttgaattcccct 40854082  T
Q  222 caaaacattaca 233  Q
    ||||| ||||||    
T  40854083 caaaatattaca 40854094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 44915316 - 44915231
Alignment:
Q  148 aatgctttgagggaattcaactact-tgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattac 232  Q
    |||| |||||||||||||||||||| | |||||||||||||||||||||| ||||||||| || ||||||||| ||||||||||||    
T  44915316 aatgttttgagggaattcaactactctaaggtgaattctattgtttgaattcacctcaaagtagttgaattccttcaaaacattac 44915231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 40110775 - 40110862
Alignment:
Q  148 aatgctttgagggaattcaactacttga-ggtgaattctattgttt-gaatccacctcaaaataattgaattccctcaaaacattaca 233  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||| |||| ||||||||| || |||||||||||||||||||||||    
T  40110775 aatgttttgagggaattcaactactttaaggtgaattctattgttttgaattcacctcaaagtagttgaattccctcaaaacattaca 40110862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 2057516 - 2057430
Alignment:
Q  148 aatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattaca 233  Q
    |||| ||||||||||||||||||||| | |||||||| |||||||||||  ||||||||| || |||||||||||||||||||||||    
T  2057516 aatgttttgagggaattcaactacttcaaggtgaattttattgtttgaactcacctcaaagtagttgaattccctcaaaacattaca 2057430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 49052906 - 49052820
Alignment:
Q  148 aatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattaca 233  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||||||| || |||||| || |||||||| ||||||||||||||    
T  49052906 aatgttttgagggaattcaactactttaaggtgaattctattgtttgaattcaactcaaagtagttgaattcactcaaaacattaca 49052820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 128 - 207
Target Start/End: Original strand, 31913236 - 31913316
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactacttgaggtg-aattctattgtttgaatccacctcaaaa 207  Q
    ||||| |||||||||||||||||| |||||||||||||||||| || ||||| |||||||||||||||||  |||||||||    
T  31913236 agagtgtgtttggatgggggaatgttttgagggaattcaactatttaaggtgaaattctattgtttgaatttacctcaaaa 31913316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 34388310 - 34388401
Alignment:
Q  155 tgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| |||||||||||||| | ||||||||| ||||||||||  ||||||||| || |||||||||||||||| |||||| | |||||||||    
T  34388310 tgagagaattcaactactttaaggtgaattccattgtttgaactcacctcaaagtagttgaattccctcaaaatattacattccctcaaaac 34388401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 32650588 - 32650657
Alignment:
Q  125 cttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    |||||||| ||||| ||||| |||||| ||||||||||||||| ||| |||||||||||| |||||||||    
T  32650588 cttagagtgtgtttcgatggaggaatgttttgagggaattcaaatactttgaggtgaattttattgtttg 32650657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 43955555 - 43955650
Alignment:
Q  148 aatgctttgagggaattcaactacttgagg-tgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||||||||||||||| | | |||||||||||    |||| ||||| ||| || ||||||||||||||||||||||| | |||||||||    
T  43955555 aatgttttgagggaattcaactactttaagatgaattctatta---gaatgcaccttaaagtagttgaattccctcaaaacattacattccctcaaaac 43955650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 13815038 - 13814969
Alignment:
Q  125 cttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    |||||||| ||||||||| |||||||| ||||||||||||||| ||| |||| |||||||| ||| ||||    
T  13815038 cttagagtgtgtttggataggggaatgttttgagggaattcaaatactttgatgtgaattccattatttg 13814969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 30587943 - 30587878
Alignment:
Q  129 gagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    |||| |||||||||||||||||| ||||||||||||||| ||| || | |||||||| ||||||||    
T  30587943 gagtgtgtttggatgggggaatgttttgagggaattcaaatactttaatgtgaattccattgtttg 30587878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 5644752 - 5644700
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||| || ||||||||||||||||||||||| | |||||||||    
T  5644752 gaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaac 5644700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 29065894 - 29065842
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||| || ||||||||||||||||||||||| | |||||||||    
T  29065894 gaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaac 29065842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 34399013 - 34398973
Alignment:
Q  123 gccttagagtatgtttggatgggggaatgctttgagggaat 163  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  34399013 gccttagagtgtgtttggatgggggaatgttttgagggaat 34398973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 30080847 - 30080776
Alignment:
Q  123 gccttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    |||| ||||| |||||||||||||||||| ||||||| |||| || ||| || |||||||||| ||||||||    
T  30080847 gcctaagagtgtgtttggatgggggaatgttttgaggaaatttaaatactttcaggtgaattccattgtttg 30080776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 40110859 - 40110760
Alignment:
Q  148 aatgctttgagggaattcaactactt-gaggtgaattctattgttt-gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||||||||||||||| ||||||||||| |     | |||| ||||| ||| || ||||||||||||||||||||||| | |||||||||    
T  40110859 aatgttttgagggaattcaactactttgaggtgaattcaaaacaatagaattcaccttaaagtagttgaattccctcaaaacattacattccctcaaaac 40110760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 28539230 - 28539192
Alignment:
Q  125 cttagagtatgtttggatgggggaatgctttgagggaat 163  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  28539230 cttagagtgtgtttggatgggggaatgttttgagggaat 28539192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 46481984 - 46482069
Alignment:
Q  148 aatgctttgagggaattcaactacttgagg-tgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattaca 233  Q
    |||| ||||||| |||| ||||| |||| | ||||||||||||||||||| || ||| ||||| |||||||  ||||||||||||||    
T  46481984 aatgttttgaggaaatttaactatttgaagatgaattctattgtttgaattcaactc-aaatagttgaattttctcaaaacattaca 46482069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 26162198 - 26162161
Alignment:
Q  126 ttagagtatgtttggatgggggaatgctttgagggaat 163  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  26162198 ttagagtgtgtttggatgggggaatgttttgagggaat 26162161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 35455802 - 35455839
Alignment:
Q  126 ttagagtatgtttggatgggggaatgctttgagggaat 163  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  35455802 ttagagtgtgtttggatgggggaatgttttgagggaat 35455839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 14790138 - 14790197
Alignment:
Q  134 tgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    ||||||||||||| |||| ||||||||||||||| ||| |||||||||||| |||| ||||    
T  14790138 tgtttggatgggg-aatgttttgagggaattcaaatactttgaggtgaattttattatttg 14790197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 26162121 - 26162173
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||| || ||||||||||||| ||||||||| | |||||||||    
T  26162121 gaattcacctcaaagtatttgaattccctcataacattacattccctcaaaac 26162173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 31632797 - 31632745
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||| || ||||||||||||| ||||||||| | |||||||||    
T  31632797 gaattcacctcaaagtatttgaattccctcataacattacattccctcaaaac 31632745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 35776939 - 35776991
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||| || ||||||||||||| ||||||||| | |||||||||    
T  35776939 gaattcacctcaaagtatttgaattccctcataacattacattccctcaaaac 35776991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 43791160 - 43791116
Alignment:
Q  198 cacctcaaaataattgaattccctcaaaacattacactacctcaa 242  Q
    ||||||||| || ||||||||||||||||||||||| | ||||||    
T  43791160 cacctcaaagtatttgaattccctcaaaacattacattccctcaa 43791116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 46069466 - 46069426
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattaca 233  Q
    |||| ||||||||| || |||||||||||||||||||||||    
T  46069466 gaattcacctcaaagtagttgaattccctcaaaacattaca 46069426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 124 - 245
Target Start/End: Complemental strand, 14537344 - 14537222
Alignment:
Q  124 ccttagagtatgtttggatgggggaatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctc 222  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| ||||||||| || ||||||| ||||    
T  14537344 ccttagagtgtgtttggatgggggaatgttttgagggaattcaactactttaaggtgaattctattgtttgaattcacctcaaagtagttgaattacctc 14537245  T
Q  223 aaaacattacactacctcaaaac 245  Q
    ||||||||||| | |||||||||    
T  14537244 aaaacattacattccctcaaaac 14537222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 41461636 - 41461539
Alignment:
Q  148 aatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    |||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  41461636 aatgttttgagggaattcaactattttgaggtgaattctattgtttgaatccacctcaaaataattaaattccctcaaaacattacattacctcaaaa 41461539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 11824825 - 11824718
Alignment:
Q  124 ccttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctc 222  Q
    ||||| ||| |||||||||||||||||| ||||||||||||||||||| || ||||||||| |||||||||||| || |||||| || ||||||||||||    
T  11824825 ccttaaagtgtgtttggatgggggaatgttttgagggaattcaactactttaaggtgaattatattgtttgaattcatctcaaagtagttgaattccctc 11824726  T
Q  223 aaaacatt 230  Q
    ||||||||    
T  11824725 aaaacatt 11824718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 27033528 - 27033607
Alignment:
Q  148 aatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaa 226  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27033528 aatgttttgagggaattcaactactttgaggtgaattctattgtttgaatccacctcaaaagaattgaattccctcaaaa 27033607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 3345769 - 3345867
Alignment:
Q  134 tgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttgaatccacctcaaaata-attgaattccctcaaaacatt 230  Q
    |||||||||||||||||| ||||||||||||||||||| || |||| ||||||||||||||||| ||||||||| ||  ||||||||||||||||||||    
T  3345769 tgtttggatgggggaatgttttgagggaattcaactactttaaggtaaattctattgtttgaattcacctcaaagtacgttgaattccctcaaaacatt 3345867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 14365820 - 14365723
Alignment:
Q  148 aatgctttgagggaattcaactacttgaggtgaattctattgttt-gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| |||||||||||||||||||||  ||||||||||||||||| |||| ||||||||| || ||||||||||||||||||||||| | |||||||||    
T  14365820 aatgttttgagggaattcaactacttt-ggtgaattctattgttttgaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaac 14365723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 784914 - 784816
Alignment:
Q  148 aatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||||||| || |||||| || || |||||| ||||||||||||| | |||||||||    
T  784914 aatgttttgagggaattcaactactttaaggtgaattctattgtttgaattcaactcaaagtagttaaattccttcaaaacattacattccctcaaaac 784816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 11716501 - 11716431
Alignment:
Q  175 aggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| | |||||||||    
T  11716501 aggtgaattctattgtttgaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaac 11716431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 44256181 - 44256241
Alignment:
Q  183 tctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaa 243  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||    
T  44256181 tctattgtttgaattcacctcaaaataatcgaattccctcaaaacattacattacctcaaa 44256241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 10244215 - 10244298
Alignment:
Q  148 aatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacatt 230  Q
    |||| ||||||||||||||||||||| | |||||||| |||||||||||  ||||||||| || ||||||||||| ||||||||    
T  10244215 aatgttttgagggaattcaactacttcaaggtgaattttattgtttgaactcacctcaaagtagttgaattcccttaaaacatt 10244298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 11684656 - 11684711
Alignment:
Q  175 aggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacatt 230  Q
    |||||||||||||||||||||| ||||||||| || ||||||||||||||||||||    
T  11684656 aggtgaattctattgtttgaattcacctcaaagtagttgaattccctcaaaacatt 11684711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 8736500 - 8736430
Alignment:
Q  124 ccttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    ||||||||| |||||||||| ||||||| ||||||||||||||| ||| ||||||||||||| ||||||||    
T  8736500 ccttagagtgtgtttggatgagggaatgttttgagggaattcaaatactttgaggtgaattccattgtttg 8736430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 11684731 - 11684674
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattc 184  Q
    ||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||||    
T  11684731 agagtgtgtttggatggaggaatgttttgagggaattcaactactttgaggtgaattc 11684674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 21504465 - 21504537
Alignment:
Q  125 cttagagtatgtttggatgggggaatgctttgagggaattcaacta-cttgaggtgaattctattgtttgaat 196  Q
    |||||||| ||||||||| |||||||| ||||||||||||||| ||  ||||| ||||||| |||||||||||    
T  21504465 cttagagtgtgtttggatcggggaatgttttgagggaattcaaatattttgagatgaattccattgtttgaat 21504537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 41461599 - 41461651
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| |||||||||||| ||||||||||||||||||||||| | |||||||||    
T  41461599 gaattcacctcaaaatagttgaattccctcaaaacattacattccctcaaaac 41461651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 11607245 - 11607304
Alignment:
Q  134 tgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgttt 192  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||||||||||||| |||||||    
T  11607245 tgtttggatggggtaatgttttgagggaattcaaatactttgaggtgaattccattgttt 11607304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 32840251 - 32840181
Alignment:
Q  124 ccttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    |||||||||||||||||||| || |||| |||||||||||| || ||| ||||||||||||  ||||||||    
T  32840251 ccttagagtatgtttggatgaggaaatgttttgagggaatttaaatactttgaggtgaatttcattgtttg 32840181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 11824704 - 11824801
Alignment:
Q  134 tgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacatt 230  Q
    ||||||||||| |||||| ||||||||||||||||||| ||||| ||||||| |    |  ||| ||||| ||| || ||||||||||||||||||||    
T  11824704 tgtttggatggaggaatgttttgagggaattcaactactttgagatgaattcaaacaatataattcaccttaaagtagttgaattccctcaaaacatt 11824801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 230
Target Start/End: Complemental strand, 3345891 - 3345783
Alignment:
Q  124 ccttagagtatgtttggatgggggaatgctttgagggaattcaac-tac-ttgaggtgaattctattgtttgaatccacctcaaaataattgaattccct 221  Q
    ||||||||  ||||||||||||| |||| |||||||||||||||| ||| ||||||||||||| |    | ||||  |||| ||| || |||||||||||    
T  3345891 ccttagagcgtgtttggatggggaaatgttttgagggaattcaacgtactttgaggtgaattcaaacaatagaatttaccttaaagtagttgaattccct 3345792  T
Q  222 caaaacatt 230  Q
    |||||||||    
T  3345791 caaaacatt 3345783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 17180364 - 17180320
Alignment:
Q  201 ctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    ||||||||| ||||||||||||||||||||||| | |||||||||    
T  17180364 ctcaaaatagttgaattccctcaaaacattacattccctcaaaac 17180320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 20935723 - 20935790
Alignment:
Q  126 ttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    ||||||| ||||||||||||| |||| ||||||||||||||| ||| |||| |||||||| ||||||||    
T  20935723 ttagagtgtgtttggatgggg-aatgttttgagggaattcaaatactttgatgtgaattccattgtttg 20935790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 11595343 - 11595402
Alignment:
Q  134 tgtttggatgggggaatgctttgagggaattcaacta-cttgaggtgaattctattgttt 192  Q
    ||||||||||||| |||| ||||||||||||||| ||  ||||||||||||| |||||||    
T  11595343 tgtttggatggggtaatgttttgagggaattcaaatattttgaggtgaattccattgttt 11595402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 11595394 - 11595355
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattac 232  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  11595394 gaattcacctcaaaatatttgaattccctcaaaacattac 11595355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 1583885 - 1583847
Alignment:
Q  125 cttagagtatgtttggatgggggaatgctttgagggaat 163  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  1583885 cttagagtgtgtttggatgggggaatgttttgagggaat 1583847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 14954388 - 14954343
Alignment:
Q  148 aatgctttgagggaattcaactac-ttgaggtgaattctattgttt 192  Q
    |||| ||||||||||||||||||| || ||||||||||||||||||    
T  14954388 aatgttttgagggaattcaactactttaaggtgaattctattgttt 14954343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 167
Target Start/End: Complemental strand, 19231334 - 19231301
Alignment:
Q  134 tgtttggatgggggaatgctttgagggaattcaa 167  Q
    |||||||||||||||||| |||||||||||||||    
T  19231334 tgtttggatgggggaatgttttgagggaattcaa 19231301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 11532251 - 11532291
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattaca 233  Q
    |||| ||||||||| || |||||||||||||||||||||||    
T  11532251 gaattcacctcaaagtatttgaattccctcaaaacattaca 11532291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 27033565 - 27033525
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattaca 233  Q
    |||| ||||||||| || |||||||||||||||||||||||    
T  27033565 gaattcacctcaaagtagttgaattccctcaaaacattaca 27033525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 39630268 - 39630308
Alignment:
Q  153 tttgagggaattcaactacttgaggtgaattctattgtttg 193  Q
    ||||||||||||||| || |||||| |||||||||||||||    
T  39630268 tttgagggaattcaaatatttgaggggaattctattgtttg 39630308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 5e-36; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 9763050 - 9763147
Alignment:
Q  148 aatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  9763050 aatgttttgagggaattcaactactttgaggtgaattctattgtttgaatccacctcacaataattgaattccctcaaaacattacattacctcaaaa 9763147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 6919828 - 6919733
Alignment:
Q  148 aatgctttgagggaattcaactacttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaa 243  Q
    |||| |||||||||||||||| | || |||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| | |||||||    
T  6919828 aatgttttgagggaattcaaccatttaaggtgaattctattgtttgaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaa 6919733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 9285685 - 9285768
Alignment:
Q  148 aatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacatt 230  Q
    |||| ||||||||||||||||||||| ||| ||||||||||||||||||| || |||||| || ||||||||||||||||||||    
T  9285685 aatgttttgagggaattcaactactttgagctgaattctattgtttgaattcatctcaaagtagttgaattccctcaaaacatt 9285768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 776201 - 776103
Alignment:
Q  148 aatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||| ||||||||||||| | |||||||||||||||||||||  | || ||| || ||||||| ||||||||||||||| | |||||||||    
T  776201 aatgttttgaggaaattcaactactttaaggtgaattctattgtttgaatttaacttaaagtagttgaatttcctcaaaacattacattccctcaaaac 776103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 9285788 - 9285670
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaa 226  Q
    ||||| ||||| |||| ||||||| ||||||||||||||||||| ||||| ||||||| |    | |||| || |||||| || ||||||||||||||||    
T  9285788 agagtgtgtttagatgagggaatgttttgagggaattcaactactttgagatgaattcaaacaatagaattcagctcaaagtagttgaattccctcaaaa 9285689  T
Q  227 cattacactacctcaaaac 245  Q
    ||||||| | |||||||||    
T  9285688 cattacattccctcaaaac 9285670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 1195351 - 1195416
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgttt 192  Q
    ||||| |||||||||||||||||| ||||||||| ||||| ||| ||||||||||||| |||||||    
T  1195351 agagtgtgtttggatgggggaatgttttgagggatttcaaatactttgaggtgaattccattgttt 1195416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 9763087 - 9763035
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||| || ||||||||||||||||||||||| | |||||||||    
T  9763087 gaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaac 9763035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 9285643 - 9285682
Alignment:
Q  124 ccttagagtatgtttggatgggggaatgctttgagggaat 163  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  9285643 ccttagagtgtgtttggatgggggaatgttttgagggaat 9285682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 8475179 - 8475245
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    ||||| ||||||||||||| |||| ||||||||||||||| ||| ||  ||||||||| ||||||||    
T  8475179 agagtgtgtttggatggggaaatgttttgagggaattcaaatacttttgggtgaattccattgtttg 8475245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 476
Target Start/End: Complemental strand, 31974850 - 31974768
Alignment:
Q  394 agctctcaacttgataatctcaaatgtttcagtttctgttaacaagacaaagaagaatgcatgaagttctatttctgaattca 476  Q
    |||| ||||||||||||| |||||||||| | | |||  ||||||||||||||| ||||| || || |||| |||| ||||||    
T  31974850 agctgtcaacttgataatttcaaatgttttactctctaataacaagacaaagaaaaatgcttggagatctacttctaaattca 31974768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 33733430 - 33733467
Alignment:
Q  126 ttagagtatgtttggatgggggaatgctttgagggaat 163  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  33733430 ttagagtgtgtttggatgggggaatgttttgagggaat 33733467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 3853654 - 3853751
Alignment:
Q  148 aatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  3853654 aatgttttgaggaaattcaactactttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctccaaacattacattacctcaaaa 3853751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 3858112 - 3858209
Alignment:
Q  148 aatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  3858112 aatgttttgaggaaattcaactactttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctccaaacattacattacctcaaaa 3858209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 13404948 - 13404851
Alignment:
Q  148 aatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    |||| ||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13404948 aatgttttgagggaattcaactactttgagatgaattttattgtttgaatccacctcaaaataattgaattccctcaaaacattacattacctcaaaa 13404851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 42739949 - 42740048
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaa 226  Q
    ||||| ||||||||||| |||||| ||||||||||||||||||||| ||| |||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  42739949 agagtgtgtttggatggaggaatgttttgagggaattcaactactttgagatgaattttattgttagaatccacctcaaaataattgaattccctcaaaa 42740048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 17110990 - 17110892
Alignment:
Q  148 aatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||||||| || |||||| || ||||||||||||||||||||||| | |||||||||    
T  17110990 aatgttttgagggaattcaactactttaaggtgaattctattgtttgaattcaactcaaagtagttgaattccctcaaaacattacattccctcaaaac 17110892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 127 - 245
Target Start/End: Complemental strand, 30435386 - 30435269
Alignment:
Q  127 tagagtatgtttggatgggggaatgctttgagggaattcaactacttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaa 226  Q
    |||||| ||||||||||||| |||| |||||||||||||||||| || |||| ||||||||||||| ||| || ||| ||||| || ||||||||| |||    
T  30435386 tagagtgtgtttggatggggaaatgttttgagggaattcaactatttaaggtaaattctattgtttaaattcaactc-aaatagttaaattccctccaaa 30435288  T
Q  227 cattacactacctcaaaac 245  Q
    ||||||| | |||||||||    
T  30435287 cattacattccctcaaaac 30435269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 191 - 245
Target Start/End: Original strand, 40046872 - 40046926
Alignment:
Q  191 ttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40046872 ttgaatccacctcaaaataattgaattccctcaaaacattacattacctcaaaac 40046926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 37268086 - 37268142
Alignment:
Q  188 tgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  37268086 tgtttgaatccacctcaaaataattaaattccctcaaaacattacattacctcaaaa 37268142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 34008796 - 34008865
Alignment:
Q  125 cttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    |||||||| |||||||||||||||||| ||||||||||||||| ||| ||||||||||||| ||||||||    
T  34008796 cttagagtgtgtttggatgggggaatgttttgagggaattcaaatactttgaggtgaattccattgtttg 34008865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 42711300 - 42711416
Alignment:
Q  124 ccttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctc 222  Q
    ||||||||| ||||||||||||| |||| ||||||| ||||||||||| ||||| ||||| |      |||||| || |||||| || ||||||||||||    
T  42711300 ccttagagtgtgtttggatggggaaatgttttgaggaaattcaactactttgagttgaatac------ttgaattcaactcaaagtagttgaattccctc 42711393  T
Q  223 aaaacattacactacctcaaaac 245  Q
    ||||||||||| | |||||||||    
T  42711394 aaaacattacattccctcaaaac 42711416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 29611384 - 29611454
Alignment:
Q  124 ccttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    ||||||||| |||||||||||||||||| ||||||||||||||| ||| ||||||||||||  ||||||||    
T  29611384 ccttagagtgtgtttggatgggggaatgttttgagggaattcaaatactttgaggtgaatttcattgtttg 29611454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 128 - 230
Target Start/End: Complemental strand, 38573541 - 38573433
Alignment:
Q  128 agagtatgtttggatgggggaatgc-----tttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccct 221  Q
    ||||| ||||||||||||||||||      ||||||| ||||||||||||| ||| ||||||||||||||||||| || || ||| || ||||||| |||    
T  38573541 agagtgtgtttggatgggggaatgtagtgttttgaggaaattcaactactttgagttgaattctattgtttgaattcaactaaaagtagttgaatttcct 38573442  T
Q  222 caaaacatt 230  Q
    |||||||||    
T  38573441 caaaacatt 38573433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 14800081 - 14799999
Alignment:
Q  148 aatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacatt 230  Q
    |||| |||||||||||||||||||||  ||||||||| |||||||||||  |||||| ||||| || |||||||||||||||||    
T  14800081 aatgttttgagggaattcaactacttcaaggtgaattttattgtttgaactcacctc-aaatagtttaattccctcaaaacatt 14799999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 30444998 - 30444932
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    ||||| ||||||||||| |||||| ||||||||||||||| ||| ||||||||||||| ||||||||    
T  30444998 agagtgtgtttggatggaggaatgttttgagggaattcaaatactttgaggtgaattccattgtttg 30444932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 33902705 - 33902786
Alignment:
Q  148 aatgctttgagggaattcaactacttgaggtgaattctattg-tttgaatccacctcaaaata-attgaattccctcaaaaca 228  Q
    |||| |||||||||||||||||||||  |||||||||||||| ||||||| ||||||||| ||  ||||||||||||||||||    
T  33902705 aatgttttgagggaattcaactactt-tggtgaattctattgttttgaattcacctcaaagtagtttgaattccctcaaaaca 33902786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 7202972 - 7202924
Alignment:
Q  125 cttagagtatgtttggatgggggaatgctttgagggaattcaactactt 173  Q
    |||||||| ||||||||||| |||||| |||||||||||||||||||||    
T  7202972 cttagagtgtgtttggatggaggaatgttttgagggaattcaactactt 7202924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 14799979 - 14800031
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactacttgaggtga 180  Q
    ||||| |||||||||||||||||| |||||||||||| ||||| |||||||||    
T  14799979 agagtgtgtttggatgggggaatgttttgagggaattaaactatttgaggtga 14800031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 26520498 - 26520438
Alignment:
Q  134 tgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    |||||||||| ||||||| ||||||||||||||| ||| ||||||||||||| ||||||||    
T  26520498 tgtttggatgagggaatgttttgagggaattcaaatactttgaggtgaattccattgtttg 26520438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 17110907 - 17111005
Alignment:
Q  148 aatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||||||||||||||| ||| ||||||| |    | |||| ||||| ||| || ||||||||||||||||||||||| | |||||||||    
T  17110907 aatgttttgagggaattcaactactttgagttgaattcaaacaatagaattcaccttaaagtagttgaattccctcaaaacattacattccctcaaaac 17111005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 4156288 - 4156228
Alignment:
Q  148 aatgctttgagggaattcaactacttgagg-tgaattctattgtttgaatccacctcaaaa 207  Q
    |||| ||||||||||||||||||||| | | ||||||||||||||||||| || |||||||    
T  4156288 aatgttttgagggaattcaactactttaagatgaattctattgtttgaattcaactcaaaa 4156228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 7202865 - 7202921
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaatt 183  Q
    ||||| |||||||||||  ||||| ||||||||||||||||||| ||||||||||||    
T  7202865 agagtgtgtttggatggatgaatgttttgagggaattcaactactttgaggtgaatt 7202921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 34388527 - 34388591
Alignment:
Q  129 gagtatgtttggatgggggaatgctttgagggaattcaactacttgaggtgaattctattgtttg 193  Q
    |||| |||||||||||||||||| |||||| |  ||||| || ||||||||||||| ||||||||    
T  34388527 gagtgtgtttggatgggggaatgttttgagagggttcaaatatttgaggtgaattccattgtttg 34388591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 29257437 - 29257399
Alignment:
Q  125 cttagagtatgtttggatgggggaatgctttgagggaat 163  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  29257437 cttagagtgtgtttggatgggggaatgttttgagggaat 29257399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 3853691 - 3853639
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||| || ||||||| ||||||||||||||| | |||||||||    
T  3853691 gaattcacctcaaagtagttgaatttcctcaaaacattacattccctcaaaac 3853639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 3858149 - 3858097
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||| || ||||||| ||||||||||||||| | |||||||||    
T  3858149 gaattcacctcaaagtagttgaatttcctcaaaacattacattccctcaaaac 3858097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 9982711 - 9982659
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| |||||||||||| || ||||| |||||||||||||| ||||| |||||    
T  9982711 gaattcacctcaaaatatttaaattctctcaaaacattacattaccttaaaac 9982659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 13404919 - 13404963
Alignment:
Q  201 ctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||||| || ||||||||||||||||||||||| | |||||||||    
T  13404919 ctcaaagtagttgaattccctcaaaacattacattccctcaaaac 13404963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 23011809 - 23011757
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||| || ||||||||||||| ||||||||| | |||||||||    
T  23011809 gaattcacctcaaagtatttgaattccctcataacattacattccctcaaaac 23011757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 40046871 - 40046827
Alignment:
Q  201 ctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||||| || ||||||||||||||||||||||| | |||||||||    
T  40046871 ctcaaagtagttgaattccctcaaaacattacattccctcaaaac 40046827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 134 - 244
Target Start/End: Original strand, 28828373 - 28828482
Alignment:
Q  134 tgtttggatgggggaatgctttgagggaattcaactacttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattaca 233  Q
    |||||||||||||||||| |||||||||||  ||    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28828373 tgtttggatgggggaatgttttgagggaatgtaatgttttgagg-gaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattaca 28828471  T
Q  234 ctacctcaaaa 244  Q
     ||||||||||    
T  28828472 ttacctcaaaa 28828482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 15374081 - 15373984
Alignment:
Q  148 aatgctttgagggaattcaactact-tgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    |||| |||||||||||||||||||| | |||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| | ||||||||    
T  15374081 aatgttttgagggaattcaactactctaaggtgaattctattgtttgaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaa 15373984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 153 - 244
Target Start/End: Original strand, 32390015 - 32390107
Alignment:
Q  153 tttgagggaattcaactact-tgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    |||||||||||||||||||| | |||||||||||||| ||||||| ||||||||| || ||||||||||||||||||||||| | ||||||||    
T  32390015 tttgagggaattcaactactctaaggtgaattctattatttgaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaa 32390107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 153 - 245
Target Start/End: Original strand, 2316421 - 2316515
Alignment:
Q  153 tttgagggaattcaactacttga--ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    ||||||||||||||||||||| |  ||||||||||||||||||||| ||||||||| || |||||||| |||||||||||||| | |||||||||    
T  2316421 tttgagggaattcaactactttaaaggtgaattctattgtttgaattcacctcaaagtagttgaattctctcaaaacattacattccctcaaaac 2316515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 6634120 - 6634039
Alignment:
Q  163 ttcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    ||||||||||| ||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| ||||||||||    
T  6634120 ttcaactactttgaggtgaattctattgtttgaattcac-tcgaaataattgaattccctcaaaacattacattacctcaaaa 6634039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 9764376 - 9764462
Alignment:
Q  148 aatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattaca 233  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||||||  ||||||||| || |||||||||||||||||||||||    
T  9764376 aatgttttgagggaattcaactactttaaggtgaattctattgtttgaactcacctcaaagtagttgaattccctcaaaacattaca 9764462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 20523254 - 20523156
Alignment:
Q  148 aatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||||||| ||||||||| || ||||||||||||| || |||||| | |||||||||    
T  20523254 aatgttttgagggaattcaactactttaaggtgaattctattgtttgaattcacctcaaagtagttgaattccctcagaatattacattccctcaaaac 20523156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 40643938 - 40643856
Alignment:
Q  148 aatgctttgagggaattcaactacttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacatt 230  Q
    |||| |||||||||||||||||| || ||||||||||||||||||||||  | |||||| || ||||||||||||||||||||    
T  40643938 aatgttttgagggaattcaactatttaaggtgaattctattgtttgaatttaactcaaagtagttgaattccctcaaaacatt 40643856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 22305112 - 22305178
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||    
T  22305112 agagtgtgtttggatgggggaatgttttgagggaattcaactactttgaggtgaattccattgtttg 22305178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 33146188 - 33146257
Alignment:
Q  125 cttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    |||||||| |||||||||||||||||| ||||||||||||||| ||| ||||||||||||| ||||||||    
T  33146188 cttagagtgtgtttggatgggggaatgttttgagggaattcaaatactttgaggtgaattccattgtttg 33146257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 15270906 - 15270837
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttgaat 196  Q
    ||||| ||||||||||| |||||| ||||||||||||||| ||| ||||||||||||| |||||||||||    
T  15270906 agagtgtgtttggatggaggaatgttttgagggaattcaaatactttgaggtgaattccattgtttgaat 15270837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 2550328 - 2550384
Alignment:
Q  128 agagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaatt 183  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  2550328 agagtgtgtttggatgggggaatgttttgagggaattcaactactttgaggtgaatt 2550384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 40809462 - 40809378
Alignment:
Q  148 aatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacatta 231  Q
    |||| |||||| ||||||| |||||| | |||||||| |||||||||||| || |||||| || |||||||||||||||||||||    
T  40809462 aatgttttgagtgaattcagctactttaaggtgaattttattgtttgaattcaactcaaagtagttgaattccctcaaaacatta 40809378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 242
Target Start/End: Original strand, 32470920 - 32471015
Alignment:
Q  148 aatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaa 242  Q
    |||| ||||| |||||||||||| || | ||| ||||||||| ||||||| || |||||| || ||||||||||||||||||||||| | ||||||    
T  32470920 aatgttttgaaggaattcaactattttaaggtaaattctattatttgaattcaactcaaagtagttgaattccctcaaaacattacattccctcaa 32471015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 16515097 - 16515027
Alignment:
Q  175 aggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    ||||||||||||||||| |||| |||||||||  | ||||||||||||||||| ||||| | |||||||||    
T  16515097 aggtgaattctattgttagaattcacctcaaagaagttgaattccctcaaaaccttacattccctcaaaac 16515027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 17542405 - 17542344
Alignment:
Q  136 tttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttgaat 196  Q
    |||||||||| ||||| ||||||||||||||| ||| ||||||||||||| |||||||||||    
T  17542405 tttggatgggagaatgttttgagggaattcaaatactttgaggtgaattccattgtttgaat 17542344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 32471003 - 32470905
Alignment:
Q  148 aatgctttgagggaattcaactactt-gaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||||||||||||||| ||| ||||||| | |  | ||||  |||| |||||| ||||||||| ||||||||||||| | |||||||||    
T  32471003 aatgttttgagggaattcaactactttgagttgaattcaaataatagaatttaccttaaaatagttgaattccttcaaaacattacattccctcaaaac 32470905  T

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Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 167
Target Start/End: Original strand, 33146058 - 33146100
Alignment:
Q  125 cttagagtatgtttggatgggggaatgctttgagggaattcaa 167  Q
    |||||||| |||||||||||||||||| |||||||||||||||    
T  33146058 cttagagtgtgtttggatgggggaatgttttgagggaattcaa 33146100  T

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Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 40643832 - 40643953
Alignment:
Q  124 ccttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctc 222  Q
    ||||| ||| ||||||||||| | |||| ||||||||||||||||||| ||||| | ||||| |    | |||| |||||  ||||| ||||||||||||    
T  40643832 ccttatagtgtgtttggatggagaaatgttttgagggaattcaactactttgagttaaattcaaacaatagaattcacct-taaatagttgaattccctc 40643930  T
Q  223 aaaacattacactacctcaaaac 245  Q
    ||||||||||| | |||||||||    
T  40643931 aaaacattacattccctcaaaac 40643953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 22302535 - 22302584
Alignment:
Q  124 ccttagagtatgtttggatgggggaatgctttgagggaattcaactactt 173  Q
    ||||||||| ||||||||||||| |||| ||||||||||||||| |||||    
T  22302535 ccttagagtgtgtttggatggggtaatgttttgagggaattcaaatactt 22302584  T

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Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 28490008 - 28490076
Alignment:
Q  125 cttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    |||| ||| ||||||||||||||| || ||||||||||||||| ||| ||||||||||||| ||||||||    
T  28490008 cttaaagtgtgtttggatggggga-tgttttgagggaattcaaatactttgaggtgaattccattgtttg 28490076  T

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Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 34982351 - 34982303
Alignment:
Q  125 cttagagtatgtttggatgggggaatgctttgagggaattcaactactt 173  Q
    |||||||| ||||||||||| |||||| |||||||||||||||| ||||    
T  34982351 cttagagtgtgtttggatggaggaatgttttgagggaattcaaccactt 34982303  T

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Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 2721560 - 2721607
Alignment:
Q  198 cacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    ||||||||| || ||||||||||||||||||||||| | |||||||||    
T  2721560 cacctcaaagtagttgaattccctcaaaacattacattccctcaaaac 2721607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 22303944 - 22303905
Alignment:
Q  124 ccttagagtatgtttggatgggggaatgctttgagggaat 163  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  22303944 ccttagagtgtgtttggatgggggaatgttttgagggaat 22303905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 28489487 - 28489546
Alignment:
Q  134 tgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgttt 192  Q
    |||||||||||||||||  |||||| |||||||| ||| ||||||||||||| |||||||    
T  28489487 tgtttggatgggggaatattttgagagaattcaaatactttgaggtgaattccattgttt 28489546  T

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Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 37722889 - 37722940
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaa 244  Q
    |||| ||||||||| || ||||||||||||||||||||||| | ||||||||    
T  37722889 gaattcacctcaaagtatttgaattccctcaaaacattacattccctcaaaa 37722940  T

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Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 23092000 - 23092086
Alignment:
Q  148 aatgctttgagggaattcaactacttgaggt-gaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattaca 233  Q
    |||| ||||| ||||||||||||||| | || |||||||||| | ||||| || || ||| || ||||| |||||||||||||||||    
T  23092000 aatgttttgaaggaattcaactactttaagttgaattctattttctgaattcatctgaaagtagttgaactccctcaaaacattaca 23092086  T

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Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 32390093 - 32390007
Alignment:
Q  148 aatgctttgagggaattcaactac-ttgaggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattaca 233  Q
    |||| ||||||||||||||||||| ||||||||||||| | |  | |||| ||||| | | || |||||||||||||||| ||||||    
T  32390093 aatgttttgagggaattcaactactttgaggtgaattcaaataatagaattcaccttagagtagttgaattccctcaaaatattaca 32390007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 3563315 - 3563364
Alignment:
Q  148 aatgctttgagggaattcaactac-ttgaggtgaattctattgtttgaat 196  Q
    |||| ||||||||||||||||||| || ||||||||||||||| ||||||    
T  3563315 aatgttttgagggaattcaactactttaaggtgaattctattgcttgaat 3563364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 12064519 - 12064454
Alignment:
Q  129 gagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    |||| ||||| |||||||||||| |||||||||||| || ||| ||||||||||||  ||||||||    
T  12064519 gagtgtgttttgatgggggaatgttttgagggaatttaaatactttgaggtgaatttcattgtttg 12064454  T

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Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 22766950 - 22766987
Alignment:
Q  126 ttagagtatgtttggatgggggaatgctttgagggaat 163  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  22766950 ttagagtgtgtttggatgggggaatgttttgagggaat 22766987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 3563352 - 3563300
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||| ||| || ||||||||||||||||||||||| | |||||||||    
T  3563352 gaattcaccttaaagtagttgaattccctcaaaacattacattccctcaaaac 3563300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 26281264 - 26281316
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||| ||| || ||||||||||||||||||||||| | |||||||||    
T  26281264 gaattcaccttaaagtagttgaattccctcaaaacattacattccctcaaaac 26281316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 40090409 - 40090461
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||| || ||||||||| ||||||||||||| | |||||||||    
T  40090409 gaattcacctcaaagtatttgaattccatcaaaacattacatttcctcaaaac 40090461  T

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Target: scaffold1562 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold1562
Description:

Target: scaffold1562; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 148 - 245
Target Start/End: Original strand, 443 - 541
Alignment:
Q  148 aatgctttgagggaattcaactacttgagg-tgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||||||||||||||| ||| ||||||||||||||||||  ||||||||| || ||||||||||||||||||||||| | |||||||||    
T  443 aatgttttgagggaattcaactacttcagggtgaattctattgtttgaactcacctcaaagtagttgaattccctcaaaacattacattccctcaaaac 541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1158 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold1158
Description:

Target: scaffold1158; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 2150 - 2052
Alignment:
Q  148 aatgctttgagggaattcaactacttgagg-tgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||||||||||||||| ||| ||||||||||||||||||  ||||||||| || ||||||||||||||||||||||| | |||||||||    
T  2150 aatgttttgagggaattcaactacttcagggtgaattctattgtttgaactcacctcaaagtagttgaattccctcaaaacattacattccctcaaaac 2052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 56395 - 56309
Alignment:
Q  148 aatgctttgagggaattcaactacttga-ggtgaattctattgtttgaatccacctcaaaataattgaattccctcaaaacattaca 233  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||||||  ||||||||| || |||||||||||||||||||||||    
T  56395 aatgttttgagggaattcaactactttaaggtgaattctattgtttgaactcacctcaaagtagttgaattccctcaaaacattaca 56309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 125 - 206
Target Start/End: Complemental strand, 17643 - 17561
Alignment:
Q  125 cttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttgaatccacctcaaa 206  Q
    |||||||| |||||||||||||||||| ||||||||||||||||| | |||||||| ||| |||||||||  |||||||||||    
T  17643 cttagagtgtgtttggatgggggaatgttttgagggaattcaactcctttgaggtgcattttattgtttggttccacctcaaa 17561  T

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Target: scaffold0039 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 109047 - 109115
Alignment:
Q  126 ttagagtatgtttggatgggggaatgctttgagggaattcaactac-ttgaggtgaattctattgtttg 193  Q
    ||||||| |||||||||||||||||| |||||||||||| || ||| |||| |||||||| ||||||||    
T  109047 ttagagtgtgtttggatgggggaatgttttgagggaatttaaatactttgatgtgaattccattgtttg 109115  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 42072 - 42020
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||||||| || ||||||||||||||||||||||| | |||||||||    
T  42072 gaattcacctcaaagtagttgaattccctcaaaacattacattccctcaaaac 42020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 42035 - 42076
Alignment:
Q  148 aatgctttgagggaattcaactac-ttgaggtgaattctatt 188  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  42035 aatgttttgagggaattcaactactttgaggtgaattctatt 42076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 4113 - 4159
Alignment:
Q  148 aatgctttgagggaattcaactactt-gaggtgaattctattgtttg 193  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  4113 aatgttttgagggaattcaaatactttgaggtgaattctattgtttg 4159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 4150 - 4110
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattaca 233  Q
    |||| ||||||||| || |||||||||||||||||||||||    
T  4150 gaattcacctcaaagtatttgaattccctcaaaacattaca 4110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 2905 - 2950
Alignment:
Q  148 aatgctttgagggaattcaactacttgaggtgaattctattgtttg 193  Q
    |||| ||||||||||||||| || ||||||||||||| ||||||||    
T  2905 aatgttttgagggaattcaaatatttgaggtgaattccattgtttg 2950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 83018 - 82966
Alignment:
Q  193 gaatccacctcaaaataattgaattccctcaaaacattacactacctcaaaac 245  Q
    |||| ||||| ||| || ||||||||||||||||||||||| | |||||||||    
T  83018 gaattcaccttaaagtagttgaattccctcaaaacattacattccctcaaaac 82966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 82981 - 83025
Alignment:
Q  148 aatgctttgagggaattcaactac-ttgaggtgaattctattgtt 191  Q
    |||| ||||||||||||||||||| || |||||||||||||||||    
T  82981 aatgttttgagggaattcaactactttaaggtgaattctattgtt 83025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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