View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7477_low_21 (Length: 224)

Name: NF7477_low_21
Description: NF7477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7477_low_21
NF7477_low_21
[»] chr8 (2 HSPs)
chr8 (87-208)||(26914837-26914958)
chr8 (13-75)||(26914757-26914819)
[»] chr5 (4 HSPs)
chr5 (100-205)||(21211262-21211367)
chr5 (22-66)||(7156000-7156044)
chr5 (22-66)||(43262845-43262889)
chr5 (22-66)||(13312519-13312563)
[»] scaffold0056 (1 HSPs)
scaffold0056 (104-209)||(63187-63292)
[»] chr4 (1 HSPs)
chr4 (22-66)||(19596933-19596977)
[»] chr1 (2 HSPs)
chr1 (22-73)||(13350896-13350947)
chr1 (24-73)||(34941713-34941762)
[»] chr6 (1 HSPs)
chr6 (22-66)||(3620904-3620948)
[»] chr3 (1 HSPs)
chr3 (22-66)||(31545446-31545490)
[»] chr2 (1 HSPs)
chr2 (22-66)||(30906196-30906240)


Alignment Details
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 26914837 - 26914958
Alignment:
Q  87 ttcaagtagaagaagggaaagaacctgaatggttggggaatactaggaaataagtttggatttctcatgtatgatggatgagtgataatgtagaataaat 186  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26914837 ttcaaatagaagaacggaaagaacctgaatggttggggaatactaggaaataagtttggatttctcatgtatgatggatgagtgataatgtagaataaat 26914936  T
Q  187 ctgcccattccaatttgtgttc 208  Q
    |||||||||||| |||||||||    
T  26914937 ctgcccattccagtttgtgttc 26914958  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 26914757 - 26914819
Alignment:
Q  13 aatatttctttaactgaaattttccaaagtagtacaaaaggatgtacacattaacgatgtcaa 75  Q
    ||||||| |||||||||||||||||| |||||||||||||||||| ||||  || ||||||||    
T  26914757 aatatttgtttaactgaaattttccagagtagtacaaaaggatgtgcacagcaaggatgtcaa 26914819  T

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Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 100 - 205
Target Start/End: Complemental strand, 21211367 - 21211262
Alignment:
Q  100 agggaaagaacctgaatggttggggaatactaggaaataagtttggatttctcatgtatgatggatgagtgataatgtagaataaatctgcccattccaa 199  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21211367 agggaaagaacctgaatggttggggaatactaggaaataattgtggatttctcatgtatgatggatgagtgataatgtggaataaatctgcccattccaa 21211268  T
Q  200 tttgtg 205  Q
    ||||||    
T  21211267 tttgtg 21211262  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 7156044 - 7156000
Alignment:
Q  22 ttaactgaaattttccaaagtagtacaaaaggatgtacacattaa 66  Q
    ||||||||||||||| ||||| |||||||| ||||||||||||||    
T  7156044 ttaactgaaattttctaaagtggtacaaaaagatgtacacattaa 7156000  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 43262845 - 43262889
Alignment:
Q  22 ttaactgaaattttccaaagtagtacaaaaggatgtacacattaa 66  Q
    |||||||||||||| |||||||||||||| || ||||||||||||    
T  43262845 ttaactgaaatttttcaaagtagtacaaaggggtgtacacattaa 43262889  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 13312563 - 13312519
Alignment:
Q  22 ttaactgaaattttccaaagtagtacaaaaggatgtacacattaa 66  Q
    |||| |||||||||| ||| |||||||||||| ||||||||||||    
T  13312563 ttaattgaaattttcgaaaatagtacaaaagggtgtacacattaa 13312519  T

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Target: scaffold0056 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 104 - 209
Target Start/End: Original strand, 63187 - 63292
Alignment:
Q  104 aaagaacctgaatggttggggaatactaggaaataagtttggatttctcatgtatgatggatgagtgataatgtagaataaatctgcccattccaatttg 203  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| || |||| |||| |||||| |||||||||||||||||||||||| | ||||    
T  63187 aaagaacctgaatggttggggaatacttggaaataagtttggatttcttatatatgttggaagagtgacaatgtagaataaatctgcccattcaagtttg 63286  T
Q  204 tgttct 209  Q
    ||||||    
T  63287 tgttct 63292  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 19596933 - 19596977
Alignment:
Q  22 ttaactgaaattttccaaagtagtacaaaaggatgtacacattaa 66  Q
    |||||||||||||||||||   |||||||||||||||||||||||    
T  19596933 ttaactgaaattttccaaaagggtacaaaaggatgtacacattaa 19596977  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 13350947 - 13350896
Alignment:
Q  22 ttaactgaaattttccaaagtagtacaaaaggatgtacacattaacgatgtc 73  Q
    ||||||||||||||| | ||| |||||||||| |||||||||||| ||||||    
T  13350947 ttaactgaaattttcgagagtggtacaaaagggtgtacacattaaggatgtc 13350896  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 34941762 - 34941713
Alignment:
Q  24 aactgaaattttccaaagtagtacaaaaggatgtacacattaacgatgtc 73  Q
    |||||||||||| || ||| ||||||| ||||||||||||||| ||||||    
T  34941762 aactgaaatttttcagagtggtacaaagggatgtacacattaaggatgtc 34941713  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 3620904 - 3620948
Alignment:
Q  22 ttaactgaaattttccaaagtagtacaaaaggatgtacacattaa 66  Q
    ||||||||||||||| ||| |||||||||  ||||||||||||||    
T  3620904 ttaactgaaattttcgaaaatagtacaaagcgatgtacacattaa 3620948  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 31545490 - 31545446
Alignment:
Q  22 ttaactgaaattttccaaagtagtacaaaaggatgtacacattaa 66  Q
    ||||||||||||||| | ||||||||||| |||| ||||||||||    
T  31545490 ttaactgaaattttcgagagtagtacaaagggatatacacattaa 31545446  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 30906196 - 30906240
Alignment:
Q  22 ttaactgaaattttccaaagtagtacaaaaggatgtacacattaa 66  Q
    |||||||||||||| || ||| |||||||||| ||||||||||||    
T  30906196 ttaactgaaatttttcagagtggtacaaaagggtgtacacattaa 30906240  T

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