View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7477_low_22 (Length: 219)
Name: NF7477_low_22
Description: NF7477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7477_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 28008827 - 28008622
Alignment:
| Q |
1 |
aataattagattccccacccaactcttcatatgtatgtgttgtgtcaattactactacagnnnnnnnnacctttaccacagccttattattttttggcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28008827 |
aataattagattccccacccaactcttcatatgtatgtgttgtgtcaattactactacagttttttttacctttaccacagccttattattttttggcta |
28008728 |
T |
|
| Q |
101 |
agttatttgatttggttttctgatgctatttgaatcaatgaaaaagtctgggaaatatgctgtaaagaaaaagatgctctctgaaactataattccctat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28008727 |
agttatttgatttggttttctgatgctatttgaatcaatgaaaaagtctgggaaatatgctgtaaagaaaaagatgctctctggaactataattccctat |
28008628 |
T |
|
| Q |
201 |
attctt |
206 |
Q |
| |
|
|||||| |
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|
| T |
28008627 |
attctt |
28008622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 90 - 206
Target Start/End: Original strand, 8343516 - 8343632
Alignment:
| Q |
90 |
ttttttggctaagttatttgatttggttttctgatgctatttgaatcaatgaaaaagtctgggaaatatgctgtaaagaaaaagatgctctctgaaacta |
189 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8343516 |
ttttttggctatgttatttgatttggttttctgatgctagttgaatcaatgaaaaagtctgggaaatatgctgtaaagaaaaagatgctctctagaacta |
8343615 |
T |
|
| Q |
190 |
taattccctatattctt |
206 |
Q |
| |
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||||||||||||||||| |
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| T |
8343616 |
taattccctatattctt |
8343632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 90 - 198
Target Start/End: Original strand, 8343156 - 8343264
Alignment:
| Q |
90 |
ttttttggctaagttatttgatttggttttctgatgctatttgaatcaatgaaaaagtctgggaaatatgctgtaaagaaaaagatgctctctgaaacta |
189 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8343156 |
ttttttggctatgttatttgatttggttttctgatgctagttgaatcaatgaaaaagtctgggaaatatgctgtaaagaaaaagatgctctctagaacta |
8343255 |
T |
|
| Q |
190 |
taattccct |
198 |
Q |
| |
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||||||||| |
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|
| T |
8343256 |
taattccct |
8343264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8343458 - 8343503
Alignment:
| Q |
1 |
aataattagattccccacccaactcttcatatgtatgtgttgtgtc |
46 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||| |
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|
| T |
8343458 |
aataattagattccccacccaactcttcataagtgtgtgttgtgtc |
8343503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8343098 - 8343143
Alignment:
| Q |
1 |
aataattagattccccacccaactcttcatatgtatgtgttgtgtc |
46 |
Q |
| |
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||||||||||||||||||||||||||||| | || ||||||||||| |
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| T |
8343098 |
aataattagattccccacccaactcttcagaagtgtgtgttgtgtc |
8343143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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