View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7477_low_27 (Length: 203)
Name: NF7477_low_27
Description: NF7477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7477_low_27 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 156; Significance: 4e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 1453392 - 1453225
Alignment:
| Q |
18 |
tcatctatggttatgtttgacagaagtctgagttcgatccaacgcatggtggtgcagcgacaaccttggttacgtggttcatgtgtcacacaaggcatgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1453392 |
tcatctatggttatgtttgacagaagtctaagttcgatccaacgcatggtggtgcagccacaaccttggttacctggttcatgtgtcacacaaggcatgt |
1453293 |
T |
|
| Q |
118 |
tggtaagcaatgatatttacttaaatcatctaaaaaagtgttgctcctcaattgttcccctcacatct |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1453292 |
tggtaagcaatgatatttacttaaatcatctaaaaaagtgttgctcctcaattgttcccctcacatct |
1453225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 1465084 - 1464917
Alignment:
| Q |
18 |
tcatctatggttatgtttgacagaagtctgagttcgatccaacgcatggtggtgcagcgacaaccttggttacgtggttcatgtgtcacacaaggcatgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1465084 |
tcatctatggttatgtttgacagaagtctaagttcgatccaacgcatggtggtgcagccacaaccttggttacctggttcatgtgtcacacaaggcatgt |
1464985 |
T |
|
| Q |
118 |
tggtaagcaatgatatttacttaaatcatctaaaaaagtgttgctcctcaattgttcccctcacatct |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1464984 |
tggtaagcaatgatatttacttaaatcatctaaaaaagtgttgctcctcaattgttcccctcacatct |
1464917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 145
Target Start/End: Complemental strand, 41705169 - 41705074
Alignment:
| Q |
50 |
ttcgatccaacgcatggtggtgcagcgacaaccttggttacgtggttcatgtgtcacacaaggcatgttggtaagcaatgatatttacttaaatca |
145 |
Q |
| |
|
||||||||| || |||||| |||||| || ||||||||||| ||||||||||||||||||| |||| ||||||||||| ||||| |||||||| |
|
|
| T |
41705169 |
ttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatggtatttggttaaatca |
41705074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University