View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7478_low_1 (Length: 233)
Name: NF7478_low_1
Description: NF7478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7478_low_1 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: scaffold0287 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 16128 - 15930
Alignment:
| Q |
18 |
cttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttcctttgtcatcccttcaggcatttcccaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
16128 |
cttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttcctttgtcatcccttcaggcgtttcccaa |
16029 |
T |
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| Q |
118 |
tcaaatgaattaagaaggtttgcaattatcatttccacggtggcgattcccaatggcatgccagggcaaattctacgccctgcaccaaatggtatcaac |
216 |
Q |
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| T |
16028 |
tcaaatgaattaagaaggtttgcaattatcatttccaccgtggcgattcccaatggcatgccagggcaaattctacgccctgcaccaaatggtatcaac |
15930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 3629957 - 3630155
Alignment:
| Q |
18 |
cttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttcctttgtcatcccttcaggcatttcccaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3629957 |
cttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttcctttgtcatcccttcaggcgtttcccaa |
3630056 |
T |
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| Q |
118 |
tcaaatgaattaagaaggtttgcaattatcatttccacggtggcgattcccaatggcatgccagggcaaattctacgccctgcaccaaatggtatcaac |
216 |
Q |
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| T |
3630057 |
tcaaatgaattaagaaggtttgcaattatcatttccaccgtggcgattcccaatggcatgccagggcaaattctacgccctgcaccaaatggtatcaac |
3630155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 3619581 - 3619772
Alignment:
| Q |
18 |
cttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttcctttgtcatcccttcaggcatttcccaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
3619581 |
cttggcaacaaggcaaaggtgattcttcttgtgtctagcaagtcctggcaatccttcagtgtctatatcttcctttgtcataccttcaggcatttcccaa |
3619680 |
T |
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| Q |
118 |
tcaaatgaattaagaaggtttgcaattatcatttccacggtggcgattcccaatggcatgccagggcaaattctacgccctgcaccaaatgg |
209 |
Q |
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| T |
3619681 |
tcaaaagagttaagaaggtttgcggttatcatttctactgtggcgattcctaatggtatgccagggcatattctacgccctgcaccgaatgg |
3619772 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 8914267 - 8914368
Alignment:
| Q |
26 |
caaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttcctttgtcatcccttcaggcatttcccaatcaaatga |
125 |
Q |
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|||||||||| | ||||||||||||| || ||||||||| ||| |||||| ||||||||||||||| ||| || || || | |||||||||||| || |
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| T |
8914267 |
caaggcaaagttcattcttcttgtgttgagtgagtcctggccacctttcagtatcaatatcttcctttatcaggccatctggtaattcccaatcaaagga |
8914366 |
T |
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| Q |
126 |
at |
127 |
Q |
| |
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|| |
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| T |
8914367 |
at |
8914368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 8900362 - 8900458
Alignment:
| Q |
26 |
caaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttcctttgtcatcccttcaggcatttcccaatcaaa |
122 |
Q |
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|||||||||| | ||||||||||||| || ||||||||| ||| |||||| ||||||||||||||| ||| || || || | |||||||||||| |
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| T |
8900362 |
caaggcaaagctcattcttcttgtgttgagtgagtcctggccacctttcagtatcaatatcttcctttaccataccatctggtaattcccaatcaaa |
8900458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 8999942 - 9000017
Alignment:
| Q |
18 |
cttggcaacaaggcaaaggtgattcttcttgtgtctagaaagtcctggcaacccttcagtgtcaatatcttccttt |
93 |
Q |
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|||||||||||||||||| |||||||||||||| || | ||||||||| |||||| ||||||||||||||| |
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| T |
8999942 |
cttggcaacaaggcaaagaggattcttcttgtgttgagtgatccctggcaacatttcagtatcaatatcttccttt |
9000017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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