View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7478_low_2 (Length: 252)
Name: NF7478_low_2
Description: NF7478
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7478_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 6651392 - 6651159
Alignment:
| Q |
1 |
caataagttattaactttctccctgccaccaaactagattgcccttgttaatgaaaaaagctagtactatctttcttctaataattacaatgacatacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6651392 |
caataagttattaactttctccctgccaccaaactagattgcccttgttaatgaaaaaagctagtactatctttcttctaataattacaatgacatacaa |
6651293 |
T |
|
| Q |
101 |
aaagcattgatagaaatcattcataatcacagattaccaagtataaggaaacccacgtgaacagtcctacatcaagtgtcatcatgaattaacccaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6651292 |
aaagcattgatagaaatcattcataatcacagattaccaagtataaggaaacccacgtgaacagtcctacatcaagtgtcatcatgaattaacccaataa |
6651193 |
T |
|
| Q |
201 |
agnnnnnnncaaaattttaaaaggtaaatcattc |
234 |
Q |
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|| ||||||||||||||||||||||||| |
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| T |
6651192 |
agaaaaaaacaaaattttaaaaggtaaatcattc |
6651159 |
T |
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