View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7479_high_1 (Length: 372)
Name: NF7479_high_1
Description: NF7479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7479_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 9 - 318
Target Start/End: Original strand, 5601748 - 5602057
Alignment:
| Q |
9 |
gaagaatatcactccttatatacttctacgagatcttatttctttcttgaaggaccatctttatcactagttttgtaaatgaattttcaaccttatcacc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5601748 |
gaagaatatcactccttatatacttctacgagatcttatttctttcttgaaggaccatctttatcactagttttgtaaatgaattttcaaccttatcacc |
5601847 |
T |
|
| Q |
109 |
aagtcatttagttttcttgcctcatggaatactttatgatggtctccatagttttttctcagtgcttcttctacctgattatatgaaagtgtaatactag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5601848 |
aagtcatttagttttcttgcctcatggaatactttatgatggtctccatagttttttctcagtgcttcttctacctgattatatgaaagtgtaatactag |
5601947 |
T |
|
| Q |
209 |
tggaccctatttgataactctacagttaccatgttgtgatcaaaacttgaaataaaagttaccatgttttaatttatatgaaaacgacagaaacacatat |
308 |
Q |
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| T |
5601948 |
tggaccctatttgataactctacagttaccatgttgtgatcaaaacttgaaataaaagttaccatgttttaatttatatgaaaacgacagaaacacatat |
5602047 |
T |
|
| Q |
309 |
acttattgtg |
318 |
Q |
| |
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|||||||||| |
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| T |
5602048 |
acttattgtg |
5602057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 9 - 318
Target Start/End: Complemental strand, 5638872 - 5638563
Alignment:
| Q |
9 |
gaagaatatcactccttatatacttctacgagatcttatttctttcttgaaggaccatctttatcactagttttgtaaatgaattttcaaccttatcacc |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638872 |
gaagaatatcactccttatatacttctacgagatcttatttctttcttgaaggaccatctttatcactagttttgtaaatgaattttcaaccttatcacc |
5638773 |
T |
|
| Q |
109 |
aagtcatttagttttcttgcctcatggaatactttatgatggtctccatagttttttctcagtgcttcttctacctgattatatgaaagtgtaatactag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638772 |
aagtcatttagttttcttgcctcatggaatactttatgatggtctccatagttttttctcagtgcttcttctacctgattatatgaaagtgtaatactag |
5638673 |
T |
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| Q |
209 |
tggaccctatttgataactctacagttaccatgttgtgatcaaaacttgaaataaaagttaccatgttttaatttatatgaaaacgacagaaacacatat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638672 |
tggaccctatttgataactctacagttaccatgttgtgatcaaaacttgaaataaaagttaccatgttttaatttatatgaaaacgacagaaacacatat |
5638573 |
T |
|
| Q |
309 |
acttattgtg |
318 |
Q |
| |
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|||||||||| |
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| T |
5638572 |
acttattgtg |
5638563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 5651647 - 5651566
Alignment:
| Q |
127 |
gcctcatggaatactttatgatggtctccat--agttttttctcagtgcttcttctacctgattatatgaaagtgtaatact |
206 |
Q |
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|||||||||||||| |||||||| ||||||| ||||||| | ||||||||| ||||||| ||||||||||||||||||| |
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| T |
5651647 |
gcctcatggaatacattatgatgatctccatttagtttttcttttgtgcttcttttacctgaatatatgaaagtgtaatact |
5651566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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