View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7479_high_2 (Length: 280)

Name: NF7479_high_2
Description: NF7479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7479_high_2
NF7479_high_2
[»] chr6 (8 HSPs)
chr6 (85-265)||(30351432-30351612)
chr6 (36-86)||(30351415-30351465)
chr6 (98-160)||(16396657-16396719)
chr6 (98-138)||(13613756-13613796)
chr6 (95-207)||(30015054-30015164)
chr6 (117-258)||(22996923-22997065)
chr6 (117-258)||(23791336-23791478)
chr6 (135-203)||(12120152-12120220)
[»] scaffold0110 (2 HSPs)
scaffold0110 (104-244)||(11447-11587)
scaffold0110 (104-244)||(19184-19324)
[»] chr2 (6 HSPs)
chr2 (98-160)||(13793680-13793742)
chr2 (98-226)||(9745354-9745483)
chr2 (98-182)||(37096668-37096752)
chr2 (145-211)||(4983987-4984053)
chr2 (147-263)||(20897327-20897444)
chr2 (166-211)||(8842415-8842460)
[»] chr7 (2 HSPs)
chr7 (104-181)||(27866674-27866751)
chr7 (112-182)||(27747377-27747447)
[»] chr5 (7 HSPs)
chr5 (144-265)||(12050270-12050390)
chr5 (85-181)||(14613536-14613632)
chr5 (85-263)||(6706260-6706438)
chr5 (85-181)||(35924645-35924740)
chr5 (85-160)||(28976692-28976767)
chr5 (97-138)||(4192001-4192042)
chr5 (104-145)||(4639522-4639563)
[»] chr4 (9 HSPs)
chr4 (104-160)||(5979791-5979847)
chr4 (106-181)||(21538915-21538990)
chr4 (84-181)||(53860772-53860868)
chr4 (96-161)||(48524009-48524072)
chr4 (116-223)||(4873071-4873178)
chr4 (168-257)||(48524001-48524091)
chr4 (85-138)||(54923066-54923119)
chr4 (148-259)||(24680788-24680900)
chr4 (98-138)||(53860895-53860935)
[»] chr3 (2 HSPs)
chr3 (104-181)||(26452806-26452883)
chr3 (98-160)||(26452896-26452958)
[»] chr8 (1 HSPs)
chr8 (104-160)||(25939303-25939359)
[»] chr1 (7 HSPs)
chr1 (96-160)||(36724238-36724302)
chr1 (96-138)||(11985450-11985492)
chr1 (147-254)||(11985445-11985553)
chr1 (98-160)||(30018669-30018729)
chr1 (147-212)||(31142475-31142540)
chr1 (96-203)||(8258908-8259013)
chr1 (98-138)||(49632849-49632889)
[»] scaffold0024 (1 HSPs)
scaffold0024 (84-132)||(96069-96117)


Alignment Details
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 85 - 265
Target Start/End: Original strand, 30351432 - 30351612
Alignment:
Q  85 aattgttttactcacatctattgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactacttctaacttataattagaaaaccg 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30351432 aattgttttactcacatctattgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactacttctaacttataactagaaaaccg 30351531  T
Q  185 acactagctaactaccgctgaatttttggtcattttcatatacttctaaaaaacactggatgtgaaaacagcaagcttctt 265  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||    
T  30351532 acactagctaactaccgctgaatttttggtcattttcatatattcctagaaaacactggatgtgaaaacagcaagcttctt 30351612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 30351415 - 30351465
Alignment:
Q  36 ctcttttatttctcgagaattgttttactcacatttattgtttcttagaaa 86  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  30351415 ctcttttatttctcgagaattgttttactcacatctattgtttcctagaaa 30351465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 16396719 - 16396657
Alignment:
Q  98 acatctattgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactac 160  Q
    ||||| |||||||  |||||| |  |||||||||| |||||||||||||||||||||||||||    
T  16396719 acatccattgttttttagaaatacgtgaaaatgactaaaaacaccccaacggtagttaactac 16396657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 13613756 - 13613796
Alignment:
Q  98 acatctattgtttcctagaaacatatgaaaatgaccaaaaa 138  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  13613756 acatctattgttttctagaaacacatgaaaatgaccaaaaa 13613796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 207
Target Start/End: Original strand, 30015054 - 30015164
Alignment:
Q  95 ctcacatctattgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactacttctaacttataattagaaaaccgacactagcta 194  Q
    |||||||| ||||||||||| ||||| |||||||| ||||||||| |  || ||||||||||||||  | |||||||||  ||||||| |||  ||| ||    
T  30015054 ctcacatc-attgtttcctaaaaacacatgaaaattaccaaaaac-ctacagcggtagttaactaccgcgaacttataaacagaaaactgacgatagtta 30015151  T
Q  195 actaccgctgaat 207  Q
    | |||||||||||    
T  30015152 attaccgctgaat 30015164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 258
Target Start/End: Complemental strand, 22997065 - 22996923
Alignment:
Q  117 aacatatgaaaatgaccaaaaacaccccaacggtagttaactacttctaacttataattagaaaaccgacactagctaactaccgctgaattttt-ggtc 215  Q
    |||| ||||||||||||||||| ||  || ||||||||||||||  ||   |||||| ||||||||||||  ||| ||||||| | || |||||| ||||    
T  22997065 aacacatgaaaatgaccaaaaatacttcagcggtagttaactacaacttgtttataactagaaaaccgacggtagttaactacagttggatttttcggtc 22996966  T
Q  216 attttcatatacttctaaaaaacactggatgtgaaaacagcaa 258  Q
    |||| ||| || |  || |||||| ||| |||||||| |||||    
T  22996965 atttccatgtattattagaaaacattggttgtgaaaatagcaa 22996923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 258
Target Start/End: Original strand, 23791336 - 23791478
Alignment:
Q  117 aacatatgaaaatgaccaaaaacaccccaacggtagttaactacttctaacttataattagaaaaccgacactagctaactaccgctgaattttt-ggtc 215  Q
    |||| ||||||||||||||||| ||  || ||||||||||||||  ||   |||||| ||||||||||||  ||| ||||||| | || |||||| ||||    
T  23791336 aacacatgaaaatgaccaaaaatacttcagcggtagttaactacaacttgtttataactagaaaaccgacggtagttaactacagttggatttttcggtc 23791435  T
Q  216 attttcatatacttctaaaaaacactggatgtgaaaacagcaa 258  Q
    |||| ||| || |  || |||||| ||| |||||||| |||||    
T  23791436 atttccatgtattattagaaaacattggttgtgaaaatagcaa 23791478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 12120220 - 12120152
Alignment:
Q  135 aaaacaccccaacggtagttaactacttctaacttataattagaaaaccgacactagctaactaccgct 203  Q
    |||| |||||| ||||||||||||||  ||| ||||||| ||||||||||| |  || |||||||||||    
T  12120220 aaaataccccagcggtagttaactaccgctagcttataactagaaaaccgataggagttaactaccgct 12120152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 244
Target Start/End: Original strand, 11447 - 11587
Alignment:
Q  104 attgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactacttctaacttataattagaaaaccgacactagctaactaccgct 203  Q
    |||||||||||||||||||||||||||||||||||||  ||| | ||||||||||||| |  |||||||| ||||||||||||  ||| ||||||  | |    
T  11447 attgtttcctagaaacatatgaaaatgaccaaaaacattccagctgtagttaactactgccgacttataactagaaaaccgacggtagttaactattgtt 11546  T
Q  204 gaatttttggtcattttcatatacttctaaaaaacactgga 244  Q
     | |||||||||||||||||||| || ||| ||||| ||||    
T  11547 aagtttttggtcattttcatatatttttaagaaacaatgga 11587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 244
Target Start/End: Original strand, 19184 - 19324
Alignment:
Q  104 attgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactacttctaacttataattagaaaaccgacactagctaactaccgct 203  Q
    |||||||||||||||||||||||||||||||||||||  ||| | ||||||||||||| |  |||||||| ||||||||||||  ||| ||||||  | |    
T  19184 attgtttcctagaaacatatgaaaatgaccaaaaacattccagctgtagttaactactgccgacttataactagaaaaccgacggtagttaactattgtt 19283  T
Q  204 gaatttttggtcattttcatatacttctaaaaaacactgga 244  Q
     | |||||||||||||||||||| || ||| ||||| ||||    
T  19284 aagtttttggtcattttcatatatttttaagaaacaatgga 19324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 13793680 - 13793742
Alignment:
Q  98 acatctattgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactac 160  Q
    ||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13793680 acatccattgtttcttagaaacatatgagaatgaccaaaaacaccccaacggtagttaactac 13793742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 226
Target Start/End: Original strand, 9745354 - 9745483
Alignment:
Q  98 acatctattgtttcctagaaacatatgaaaatgaccaaaaacacc-ccaacggtagttaactacttctaacttataattagaaaaccgacactagctaac 196  Q
    ||||| |||||||| ||||||||| || ||||||||||||| | | ||  ||||||||||||||| || ||||||| |  ||||| || |  ||| ||||    
T  9745354 acatccattgtttcttagaaacatgtggaaatgaccaaaaaaaactccggcggtagttaactactgctgacttatattaggaaaatcggcggtagttaac 9745453  T
Q  197 taccgctgaatttttggtcattttcatata 226  Q
    ||||||||| ||||||||||||||||||||    
T  9745454 taccgctgagtttttggtcattttcatata 9745483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 182
Target Start/End: Complemental strand, 37096752 - 37096668
Alignment:
Q  98 acatctattgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactacttctaacttataattagaaaac 182  Q
    |||| |||| ||||||||||||||||| | |||| |||||||| | |||||||||||||||||  || |||||||| || |||||    
T  37096752 acatatattttttcctagaaacatatggagatgagcaaaaacatctcaacggtagttaactaccgctgacttataactaaaaaac 37096668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 4984053 - 4983987
Alignment:
Q  145 aacggtagttaactacttctaacttataattagaaaaccgacactagctaactaccgctgaattttt 211  Q
    |||| |||||||||||  ||||||||||| ||||||| ||||  ||| |||||||||||||||||||    
T  4984053 aacgatagttaactaccgctaacttataactagaaaatcgacggtagttaactaccgctgaattttt 4983987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 263
Target Start/End: Complemental strand, 20897444 - 20897327
Alignment:
Q  147 cggtagttaactacttctaacttataattagaaaaccgacactagctaactaccgct-gaatttttggtcattttcatatacttctaaaaaacactggat 245  Q
    ||||||| ||||||| || |||||||||||||||||||||| ||  ||||||| ||| || |||||| |||||| ||| |  ||||| |||| | |||||    
T  20897444 cggtagtaaactactgctgacttataattagaaaaccgacagtatttaactactgctggattttttgatcatttccatgtgtttctagaaaatattggat 20897345  T
Q  246 gtgaaaacagcaagcttc 263  Q
    || |||| || |||||||    
T  20897344 gtcaaaaaagaaagcttc 20897327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 8842415 - 8842460
Alignment:
Q  166 acttataattagaaaaccgacactagctaactaccgctgaattttt 211  Q
    |||||||||||||||||||||  ||| ||||||||||||| |||||    
T  8842415 acttataattagaaaaccgacggtagttaactaccgctgagttttt 8842460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 27866751 - 27866674
Alignment:
Q  104 attgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactacttctaacttataattagaaaa 181  Q
    |||||||||||||||||||||||||||||| |||||| || |||| |||||||||||  || |||||||| |||||||    
T  27866751 attgtttcctagaaacatatgaaaatgaccgaaaacaaccgaacgatagttaactaccgctgacttataactagaaaa 27866674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 182
Target Start/End: Original strand, 27747377 - 27747447
Alignment:
Q  112 ctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactacttctaacttataattagaaaac 182  Q
    ||||||||| ||||||||||| ||||| | | || |||||||||||||||  || ||||||||| ||||||    
T  27747377 ctagaaacacatgaaaatgactaaaaataactcagcggtagttaactactattagcttataatttgaaaac 27747447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 265
Target Start/End: Original strand, 12050270 - 12050390
Alignment:
Q  144 caacggtagttaactacttctaacttataattagaaaaccgacactagctaactaccgctgaatttttggtcattttcatatacttctaaaaaacactgg 243  Q
    |||| ||| ||||||||  ||||||||||||||||||||||||  ||  ||||| | | |   |||||||| |||| |||||| |||||||||||||| |    
T  12050270 caacagtaattaactaccgctaacttataattagaaaaccgacggtaattaactgc-gttaggtttttggttatttccatatatttctaaaaaacactag 12050368  T
Q  244 atgtgaaaacagcaagcttctt 265  Q
    ||||||||||||||||||||||    
T  12050369 atgtgaaaacagcaagcttctt 12050390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 14613536 - 14613632
Alignment:
Q  85 aattgttttactcacatctattgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactacttctaacttataattagaaaa 181  Q
    ||||| ||| ||| |||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||||| | ||| ||  ||||||| |||||||    
T  14613536 aattgcttttctcgcatccattgtttcctagaaacacatgaaaataaccaaaaacactccaacggtagttagccactgctggcttataactagaaaa 14613632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 263
Target Start/End: Original strand, 6706260 - 6706438
Alignment:
Q  85 aattgttttactcacatctattgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactacttctaacttataattagaaaaccg 184  Q
    ||||||||| |||||||  |||||||| || ||||| |||||||| ||||||||||   || ||||||||||||||   | |||||||| || ||||  |    
T  6706260 aattgtttttctcacattcattgtttcttataaacacatgaaaataaccaaaaacatttcagcggtagttaactaccgttgacttataactaaaaaattg 6706359  T
Q  185 acactagctaactaccgctgaatttttggtcattttcatatacttctaaaaaacactggatgtgaaaacagcaagcttc 263  Q
     || ||| ||||||||| ||| ||||| ||||||||  | |  || ||| ||||||| ||||| |||||||||||||||    
T  6706360 gcagtagttaactaccgttgagttttttgtcatttttgtgtgtttttaagaaacactagatgtaaaaacagcaagcttc 6706438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 35924740 - 35924645
Alignment:
Q  85 aattgttttactcacatctattgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactacttctaacttataattagaaaa 181  Q
    ||||| ||| |||||||| ||||||||||||||||||||| |||| |||||| |||  ||| || |||||||||||   | |||||||| |||||||    
T  35924740 aattgcttttctcacatccattgtttcctagaaacatatggaaataaccaaacaca-tccagcgatagttaactaccattgacttataactagaaaa 35924645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 28976767 - 28976692
Alignment:
Q  85 aattgttttactcacatctattgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactac 160  Q
    ||||| ||| |||||||| |||||||| |||||| | |||||||||| ||||||||  | |||| |||||||||||    
T  28976767 aattgcttttctcacatccattgtttcttagaaatacatgaaaatgatcaaaaacattcaaacgatagttaactac 28976692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 4192042 - 4192001
Alignment:
Q  97 cacatctattgtttcctagaaacatatgaaaatgaccaaaaa 138  Q
    |||||| ||||||||||| ||||| |||||||||||||||||    
T  4192042 cacatccattgtttcctacaaacacatgaaaatgaccaaaaa 4192001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 4639563 - 4639522
Alignment:
Q  104 attgtttcctagaaacatatgaaaatgaccaaaaacacccca 145  Q
    |||||||| |||||||| |||||||||| |||||||||||||    
T  4639563 attgtttcttagaaacacatgaaaatgatcaaaaacacccca 4639522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 5979847 - 5979791
Alignment:
Q  104 attgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactac 160  Q
    |||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||    
T  5979847 attgtttcttagaaacaaatggaaatgaccaaaaacaccccaacggtagttaactac 5979791  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 21538990 - 21538915
Alignment:
Q  106 tgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactacttctaacttataattagaaaa 181  Q
    ||||||||||||||| | | ||||||||||||||||||||| ||||||||| |||  ||  |||||||||||||||    
T  21538990 tgtttcctagaaacacaaggaaatgaccaaaaacaccccaatggtagttaattaccgctggcttataattagaaaa 21538915  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 53860772 - 53860868
Alignment:
Q  84 aaattgttttactcacatctattgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactacttctaacttataattagaaaa 181  Q
    |||||| ||| |||||||| | ||||||||||||||| ||| ||||||||||||| |  ||||||||||||||| ||  || |||||||| |||||||    
T  53860772 aaattgcttttctcacatccaatgtttcctagaaacacatggaaatgaccaaaaa-aatccaacggtagttaaccaccgctgacttataactagaaaa 53860868  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 48524009 - 48524072
Alignment:
Q  96 tcacatctattgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactact 161  Q
    ||||||| | |||||| |||||||||||||||||||||||||  | | ||||||||||||||||||    
T  48524009 tcacatcaagtgtttcatagaaacatatgaaaatgaccaaaa--aactcaacggtagttaactact 48524072  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 223
Target Start/End: Original strand, 4873071 - 4873178
Alignment:
Q  116 aaacatatgaaaatgaccaaaaacaccccaacggtagttaactacttctaacttataattagaaaaccgacactagctaactaccgctgaatttttggtc 215  Q
    ||||| ||| |||||| |||||||||  || ||||||||||||||  || |||||||| |||||||| ||   ||| |||||||| |||  ||||| |||    
T  4873071 aaacacatggaaatgatcaaaaacacttcagcggtagttaactaccgctgacttataactagaaaactgatggtagttaactaccactgggtttttagtc 4873170  T
Q  216 attttcat 223  Q
    ||||||||    
T  4873171 attttcat 4873178  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 257
Target Start/End: Complemental strand, 48524091 - 48524001
Alignment:
Q  168 ttataattagaaaaccgacactagctaactaccgctgaattttt-ggtcattttcatatacttctaaaaaacactggatgtgaaaacagca 257  Q
    |||||| || |||| ||||| ||| ||||||||| ||| ||||| ||||||||||||||  |||||  ||||||| |||||||||| ||||    
T  48524091 ttataactaaaaaatcgacagtagttaactaccgttgagttttttggtcattttcatatgtttctatgaaacacttgatgtgaaaaaagca 48524001  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 54923119 - 54923066
Alignment:
Q  85 aattgttttactcacatctattgtttcctagaaacatatgaaaatgaccaaaaa 138  Q
    ||||| ||| |||||||| ||||||||||||| ||| ||| |||||||||||||    
T  54923119 aattgcttttctcacatccattgtttcctagagacacatggaaatgaccaaaaa 54923066  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 259
Target Start/End: Original strand, 24680788 - 24680900
Alignment:
Q  148 ggtagttaactacttctaacttataattagaaaaccgacactagctaactaccgctgaattttt-ggtcattttcatatacttctaaaaaacactggatg 246  Q
    |||||||||||||  ||  ||||||| |||| |||||||  ||| ||| ||||||||||||||| | |||||||||| |  || ||| ||||| | ||||    
T  24680788 ggtagttaactaccgctggcttataactagagaaccgacggtagttaattaccgctgaatttttcgatcattttcatgtgtttttaagaaacaatagatg 24680887  T
Q  247 tgaaaacagcaag 259  Q
    |||||||| ||||    
T  24680888 tgaaaacaacaag 24680900  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 53860935 - 53860895
Alignment:
Q  98 acatctattgtttcctagaaacatatgaaaatgaccaaaaa 138  Q
    ||||| ||||||||||||||||| ||| |||||||||||||    
T  53860935 acatccattgtttcctagaaacacatggaaatgaccaaaaa 53860895  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 26452806 - 26452883
Alignment:
Q  104 attgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactacttctaacttataattagaaaa 181  Q
    ||||||| ||||||||| |||||||||||||||||||||||| |  |||||||||||  ||  ||||||| |||||||    
T  26452806 attgttttctagaaacacatgaaaatgaccaaaaacaccccagcaatagttaactaccgctggcttataactagaaaa 26452883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 26452958 - 26452896
Alignment:
Q  98 acatctattgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactac 160  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| || ||| |  |||||||||||    
T  26452958 acatccattatttcctagaaacacatgaaaatgaccaaaaatactccagcaatagttaactac 26452896  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 25939303 - 25939359
Alignment:
Q  104 attgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactac 160  Q
    ||||||||||||||||||||| ||| |||||||||||| | | ||||||||||||||    
T  25939303 attgtttcctagaaacatatggaaaagaccaaaaacacacaagcggtagttaactac 25939359  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 36724302 - 36724238
Alignment:
Q  96 tcacatctattgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactac 160  Q
    ||||||| |||| |||||||||| ||||| |||| |||||||| | |||||||||||||||||||    
T  36724302 tcacatccattgcttcctagaaatatatggaaataaccaaaaaaaacccaacggtagttaactac 36724238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 11985450 - 11985492
Alignment:
Q  96 tcacatctattgtttcctagaaacatatgaaaatgaccaaaaa 138  Q
    ||||||||||||||| ||||||||| |||||||||||||||||    
T  11985450 tcacatctattgttttctagaaacacatgaaaatgaccaaaaa 11985492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 254
Target Start/End: Complemental strand, 11985553 - 11985445
Alignment:
Q  147 cggtagttaactacttctaacttataattagaaaaccgacactagctaactaccgctgaattttt-ggtcattttcatatacttctaaaaaacactggat 245  Q
    |||||||||||||   || |||||||| |||||| |||||| ||  ||||||||| ||| ||||| |||||||||||| |  ||||| |||||| | |||    
T  11985553 cggtagttaactatcgctgacttataactagaaatccgacagtaattaactaccgatgagttttttggtcattttcatgtgtttctagaaaacaatagat 11985454  T
Q  246 gtgaaaaca 254  Q
    |||||||||    
T  11985453 gtgaaaaca 11985445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 30018729 - 30018669
Alignment:
Q  98 acatctattgtttcctagaaa-catatgaaaatgaccaaaaacaccccaacggtagttaactac 160  Q
    ||||| ||||||||||||||| || ||| ||||||||||||||   ||||||||||||||||||    
T  30018729 acatccattgtttcctagaaaacacatggaaatgaccaaaaac---ccaacggtagttaactac 30018669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 31142540 - 31142475
Alignment:
Q  147 cggtagttaactacttctaacttataattagaaaaccgacactagctaactaccgctgaatttttg 212  Q
    ||||||||||||||  | ||||||||| | ||||||||||  ||| ||||||||||||| ||||||    
T  31142540 cggtagttaactaccaccaacttataactggaaaaccgacgttagttaactaccgctgagtttttg 31142475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 203
Target Start/End: Original strand, 8258908 - 8259013
Alignment:
Q  96 tcacatctattgtttcctagaaacatatgaaaatgaccaaaaacaccccaacggtagttaactacttctaacttataattagaaaaccgacactagctaa 195  Q
    ||||||| ||||||||||| ||||| ||||||||||| ||||  | | || ||||||||||||| |  |  ||||||| |||||||| |||  ||| |||    
T  8258908 tcacatccattgtttcctaaaaacacatgaaaatgactaaaa--aactcagcggtagttaactattgttggcttataactagaaaactgacgataggtaa 8259005  T
Q  196 ctaccgct 203  Q
    ||||||||    
T  8259006 ctaccgct 8259013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 49632849 - 49632889
Alignment:
Q  98 acatctattgtttcctagaaacatatgaaaatgaccaaaaa 138  Q
    ||||||||||||||||||||||| ||  |||||||||||||    
T  49632849 acatctattgtttcctagaaacacatagaaatgaccaaaaa 49632889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 96069 - 96117
Alignment:
Q  84 aaattgttttactcacatctattgtttcctagaaacatatgaaaatgac 132  Q
    |||||| ||| |||||||| ||| ||||||| |||||||||||||||||    
T  96069 aaattgcttttctcacatcaattatttcctaaaaacatatgaaaatgac 96117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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