View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7479_high_3 (Length: 209)
Name: NF7479_high_3
Description: NF7479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7479_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 130; Significance: 1e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 38629234 - 38629040
Alignment:
| Q |
1 |
ttgtgtaattagagaaaggcatggcttgctacaatcagtcaca----tctatacatataaattttatgtcaaaaatctatacatataatataattttagg |
96 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38629234 |
ttgtgtaattagaaaaaggcatggcttgctacaatcagtcacaaacatctatacatataaattttatgtcaaaaatctatacatataat-----tttagg |
38629140 |
T |
|
| Q |
97 |
ttacctctaatatgatcccnnnnnnncaaggttcatatgtggtcctcttaatatgaccggttatagcaggtagatgtagcattataactttattcttctc |
196 |
Q |
| |
|
||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38629139 |
ttatctctaatatgatccctttttttcaaggtccatatgtggtcctcttaatatgaccggttatagcaggtagatgtagcattataactttattcttctc |
38629040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 38600610 - 38600496
Alignment:
| Q |
1 |
ttgtgtaattagagaaaggcatggcttgctacaatcagtc----acatctatacatat-aaattttatgtcaaaaatctatacatataatataattttag |
95 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38600610 |
ttgtgtaattagaaaaaggcatggcttgctacaatcagtcacaaacatctatacatataaaattttatgtcaaaaatctatac-----atataattttag |
38600516 |
T |
|
| Q |
96 |
gttacctctaatatgatccc |
115 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
38600515 |
gttacctctaatatgatccc |
38600496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 38746335 - 38746273
Alignment:
| Q |
134 |
tgtggtcctcttaatatgaccggttatagcaggtagatgtagcattataactttattcttctc |
196 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
38746335 |
tgtggtcctcttaatatgaccgattatagcaggtagatgtagtattacaactttattcttctc |
38746273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 54402295 - 54402233
Alignment:
| Q |
134 |
tgtggtcctcttaatatgaccggttatagcaggtagatgtagcattataactttattcttctc |
196 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||| |||||| |||| ||||||||||||||| |
|
|
| T |
54402295 |
tgtggtcctcttaatataaccaattatagcaggtacatgtagtattacaactttattcttctc |
54402233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University