View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7480_high_1 (Length: 624)
Name: NF7480_high_1
Description: NF7480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7480_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 297 - 605
Target Start/End: Original strand, 7869398 - 7869703
Alignment:
| Q |
297 |
ccatacaccaaaactattattatacccataccctataaattattaaaaatactaattttagcccttttaaaaatcacactcatccacctcatcaaatgtt |
396 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7869398 |
ccatacaccaaaactattat---acctataccctataaattattaaaaatactaattttagcccttttaaaaatcacactcatccacctcataaaatgtt |
7869494 |
T |
|
| Q |
397 |
ttcaaaattgaacatacatgaatcgattcccatatcgaaaatcttagtgaaagttttccgagactaaccgaaacaaaaatcatagagaaactaaaataca |
496 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7869495 |
ttcagaattgaacatacatgaatcgattcccatatcgaaaatcttagtgaaagtttcccgagactaacccaaacaaaaatcatagagaaactaaaataca |
7869594 |
T |
|
| Q |
497 |
ataattagcactaatctataatcaaatgacctatcaaccactccttcaattatatcacaacattcttccttcttctaacaccaaaatcaacaatcaaact |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7869595 |
ataattagcactaatctataatcaaatgacctatcaaccactccttcaattatatcacaacattcttccttcttctaacaccaaaaacaacaatcaaact |
7869694 |
T |
|
| Q |
597 |
tctacttct |
605 |
Q |
| |
|
||||||||| |
|
|
| T |
7869695 |
tctacttct |
7869703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 7869112 - 7869342
Alignment:
| Q |
9 |
caatccaatgaatagctcgacaaagatcgaaagcttccccttcttaattgtcaaatatgggttaaatgtcgtcgtttttgcatgnnnnnnnnntgttctt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||| | ||||| |
|
|
| T |
7869112 |
caatccaatgaatagctcgacaaagatcgaaagcttccccttcttaattgttagatatgggttaaatgtcgtcgttttcgcatgaaaaaaa--tattctt |
7869209 |
T |
|
| Q |
109 |
cgccatcacgtaaacacatttcaatgtccacttaattattataggtgagattagttgtgaattcatacaatatcgtaactcacttttttgcaaagaatgg |
208 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| | ||||||||||||||| |
|
|
| T |
7869210 |
cgccatcacgtaaacacatttcaatgcccacttaattattataggtgagatcagttgtgaattcatgcaatatcgtaactcattcttttgcaaagaatgg |
7869309 |
T |
|
| Q |
209 |
cctcgccaacagaaggagtaagtgagtattgtc |
241 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
7869310 |
cctcgccaacagaaggagtgagtgagtattgtc |
7869342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 7869056 - 7869090
Alignment:
| Q |
11 |
atccaatgaatagctcgacaaagatcgaaagcttc |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
7869056 |
atccaatgaatagctcgacaaagatcgaaagcttc |
7869090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 540 - 594
Target Start/End: Original strand, 32336623 - 32336677
Alignment:
| Q |
540 |
cttcaattatatcacaacattcttccttcttctaacaccaaaatcaacaatcaaa |
594 |
Q |
| |
|
|||||||||| || |||| |||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
32336623 |
cttcaattatttcgcaaccttcttcattcttctaacaccaaaaacaactatcaaa |
32336677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University