View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7480_low_2 (Length: 574)

Name: NF7480_low_2
Description: NF7480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7480_low_2
NF7480_low_2
[»] chr4 (8 HSPs)
chr4 (20-287)||(53621491-53621761)
chr4 (312-417)||(41349524-41349629)
chr4 (313-376)||(38417566-38417629)
chr4 (344-417)||(8516822-8516895)
chr4 (312-377)||(11482808-11482873)
chr4 (312-417)||(39135509-39135614)
chr4 (312-376)||(8516892-8516956)
chr4 (312-376)||(43419415-43419479)
[»] chr8 (11 HSPs)
chr8 (298-572)||(24744392-24744667)
chr8 (298-572)||(43583357-43583632)
chr8 (298-459)||(24749988-24750149)
chr8 (298-425)||(43579678-43579805)
chr8 (312-417)||(22619907-22620012)
chr8 (312-376)||(8095358-8095422)
chr8 (316-377)||(9190481-9190542)
chr8 (312-417)||(22621133-22621238)
chr8 (312-409)||(24068342-24068439)
chr8 (314-383)||(41522721-41522790)
chr8 (312-376)||(35945477-35945541)
[»] chr6 (4 HSPs)
chr6 (298-572)||(26452076-26452351)
chr6 (298-459)||(26446503-26446664)
chr6 (311-376)||(13800042-13800107)
chr6 (312-376)||(8412356-8412420)
[»] chr5 (9 HSPs)
chr5 (298-572)||(21006138-21006413)
chr5 (298-425)||(21011799-21011926)
chr5 (344-424)||(30253630-30253710)
chr5 (312-423)||(21790511-21790622)
chr5 (312-398)||(8188218-8188304)
chr5 (312-377)||(11907200-11907265)
chr5 (312-377)||(12830977-12831042)
chr5 (312-417)||(19050761-19050866)
chr5 (312-376)||(37371069-37371133)
[»] chr1 (13 HSPs)
chr1 (298-466)||(24501935-24502103)
chr1 (315-421)||(48332730-48332836)
chr1 (317-503)||(32960126-32960314)
chr1 (312-417)||(24517613-24517718)
chr1 (314-417)||(40109375-40109478)
chr1 (312-417)||(8092610-8092715)
chr1 (314-417)||(2973007-2973110)
chr1 (312-376)||(14765134-14765198)
chr1 (314-417)||(40110651-40110754)
chr1 (313-387)||(32959858-32959932)
chr1 (312-417)||(25035370-25035475)
chr1 (312-417)||(25040583-25040688)
chr1 (312-396)||(24516346-24516430)
[»] chr7 (5 HSPs)
chr7 (314-424)||(7338156-7338266)
chr7 (311-398)||(132017-132104)
chr7 (314-383)||(4167465-4167534)
chr7 (312-377)||(47537079-47537144)
chr7 (312-397)||(21171505-21171590)
[»] chr3 (8 HSPs)
chr3 (317-398)||(48866158-48866239)
chr3 (312-417)||(48867429-48867534)
chr3 (312-418)||(23886712-23886818)
chr3 (312-377)||(54109508-54109573)
chr3 (313-373)||(12060671-12060731)
chr3 (312-376)||(12062424-12062488)
chr3 (312-376)||(44384336-44384400)
chr3 (312-380)||(54752628-54752696)
[»] chr2 (5 HSPs)
chr2 (314-383)||(7983728-7983797)
chr2 (298-377)||(14510548-14510627)
chr2 (312-423)||(38801191-38801302)
chr2 (312-397)||(20948414-20948499)
chr2 (312-372)||(25570914-25570974)


Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 53621761 - 53621491
Alignment:
Q  20 gaagcaattgaaaccttgtttggcgaatgaataggatcgatccagatatgaaatggtgatccctttaactcggtttcttgtgcatttatttatggagaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53621761 gaagcaattgaaaccttgtttggcgaatgaataggatcgatccagatatgaaatggtgatccctttaactcggtttcttgtgcatttatttatggagaaa 53621662  T
Q  120 atatccaaaatttatatggaatgaatttgagttcttgattgctacgataatgtattgctgttgtgttggataagaacgatatcacgtgtcatagtgtcgg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53621661 atatccaaaatttatatggaatgaatttgagttcttgattgctacgataatgtattgctgttgtgttggataagaacgatatcacgtgtcatagtgtcgg 53621562  T
Q  220 actacgacactcctgtggatattcctacgattacaaaacaacgttatt---ttttacaaaactaaataata 287  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||   ||||||||||||||||||||    
T  53621561 actacgacactcccgtggatattcctaagattacaaaacaacgttatttttttttacaaaactaaataata 53621491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 417
Target Start/End: Complemental strand, 41349629 - 41349524
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtccttt 411  Q
    |||||||||||||||||| | |||||| ||   ||||||||||||||| |||||||||||| |||  ||| |  |||||| |||||| |  |||||||||    
T  41349629 ggtcccttaacttattttattttctcagtttgatcccttaacttttaagtgtgtcaatttgatcccataaatcttcctccatttactaatgtggtccttt 41349530  T
Q  412 ctgtta 417  Q
    ||||||    
T  41349529 ctgtta 41349524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 376
Target Start/End: Original strand, 38417566 - 38417629
Alignment:
Q  313 gtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcc 376  Q
    |||| |||||||||||| | |||||| ||  ||||||||||| |||| ||||||||||||||||    
T  38417566 gtcctttaacttattttattttctcagtttggtcccttaactattaagtgtgtcaatttggtcc 38417629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 417
Target Start/End: Complemental strand, 8516895 - 8516822
Alignment:
Q  344 gtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgtta 417  Q
    ||||||||||||| |||||| ||||||||||||  ||| ||  ||||||||||| || | ||||| ||||||||    
T  8516895 gtcccttaactttaaattgtctcaatttggtcccttaactatacctccgtttacgtaataggtcccttctgtta 8516822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 377
Target Start/End: Original strand, 11482808 - 11482873
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcct 377  Q
    ||||||||||||||||||   |||||| ||  ||||||||||| |||| ||| |||||||||||||    
T  11482808 ggtcccttaacttattttaatttctcagtttggtcccttaactattaaatgtttcaatttggtcct 11482873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 417
Target Start/End: Complemental strand, 39135614 - 39135509
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtccttt 411  Q
    |||||||||| ||||||||   | ||| || |||||| ||||||| || ||| ||||||||||||  ||||||  |||||||||||  |  |||||||||    
T  39135614 ggtcccttaatttatttttggatttcaatttagtcccctaactttaaactgtctcaatttggtcccctaagtatacctccgtttacccaagtggtccttt 39135515  T
Q  412 ctgtta 417  Q
    ||||||    
T  39135514 ctgtta 39135509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 376
Target Start/End: Complemental strand, 8516956 - 8516892
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcc 376  Q
    |||||||||||||||||||   | ||| ||  ||||||||||||| |||||| ||||||||||||    
T  8516956 ggtcccttaacttatttttgaatttcaatttggtcccttaactttaaattgtctcaatttggtcc 8516892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 376
Target Start/End: Complemental strand, 43419479 - 43419415
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcc 376  Q
    |||||||||||||||||| | |||||| ||  ||||||||||| | || ||| ||||||||||||    
T  43419479 ggtcccttaacttattttattttctcagtttcgtcccttaactataaagtgtctcaatttggtcc 43419415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 298 - 572
Target Start/End: Original strand, 24744392 - 24744667
Alignment:
Q  298 ttaatgcatacgcaggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttac 397  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24744392 ttaatgcatacggaggtcccttaacttattttttcttctcacttcagttccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttac 24744491  T
Q  398 ttagttggtcctttctgttaactttttg-nnnnnnncgttaactctgtacaggtggttgtccacgttggccaatcacttgaggacatggcaaatcactat 496  Q
    ||||||||||||||||||||||||||||        |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24744492 ttagttggtcctttctgttaactttttgaaaaaaaacgttaactatgtacaggtggctgtccacgttggccaatcacttgaggacatggcaaatcactat 24744591  T
Q  497 cagcaatataaaaggggatgaaatgtcaaaaattagggtttcattgatctcattcctccttctctctgctactcca 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  24744592 cagcaatataaaaggggatgaaatgtcaaaaattagggtttcattgatcacattcctccttctctcttcttctcca 24744667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 298 - 572
Target Start/End: Complemental strand, 43583632 - 43583357
Alignment:
Q  298 ttaatgcatacgcaggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttac 397  Q
    ||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||    
T  43583632 ttaatacatacgcatgtcccttaatttattttttcttctcacttcagtcccttaacttttaaatgtgtcaatttggtcctgtaagttctcttccgtttac 43583533  T
Q  398 ttagttggtcctttctgttaactttttgnnnnnnn-cgttaactctgtacaggtggttgtccacgttggccaatcacttgaggacatggcaaatcactat 496  Q
      ||||| ||||||||||||||||||||        ||||||||||| | | |||| |||||||||||||||||||||||||||||||||||||||||||    
T  43583532 ccagttgatcctttctgttaactttttgaaaaaaaacgttaactctgcataagtggctgtccacgttggccaatcacttgaggacatggcaaatcactat 43583433  T
Q  497 cagcaatataaaaggggatgaaatgtcaaaaattagggtttcattgatctcattcctccttctctctgctactcca 572  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||    
T  43583432 cagcaatataaaaggggatgaaatgtcaaaaattagggttttattgatctcattcctccttctctcttcttctcca 43583357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 298 - 459
Target Start/End: Complemental strand, 24750149 - 24749988
Alignment:
Q  298 ttaatgcatacgcaggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttac 397  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  24750149 ttaatgcatacgcaagtcccttaacttattttttcttctcacttcagtcccttaacttttaaatgtgtcaatttggtcctgtaagtactcttccgtttac 24750050  T
Q  398 ttagttggtcctttctgttaactttttgnnnnnnncgttaactctgtacaggtggttgtcca 459  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||| ||||||    
T  24750049 ttagttggtcctttctgttaactttttgaaaacaacgttaactctgtacaggtggctgtcca 24749988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 298 - 425
Target Start/End: Original strand, 43579678 - 43579805
Alignment:
Q  298 ttaatgcatacgcaggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttac 397  Q
    ||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| |||||||||    
T  43579678 ttaatacatacgcaagtctcttaacttattttttcttctcacttcagtcccttaactattaaatgtttcaatttggtcctgtaagtactcttccgtttac 43579777  T
Q  398 ttagttggtcctttctgttaactttttg 425  Q
    ||||||||||||||||||||||||||||    
T  43579778 ttagttggtcctttctgttaactttttg 43579805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 417
Target Start/End: Original strand, 22619907 - 22620012
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtccttt 411  Q
    |||||||||||||||||| | |||||| ||   ||||||||||||||| ||||||||||||||||  ||| |  ||||| ||||||| |  ||||| |||    
T  22619907 ggtcccttaacttattttattttctcagtttgatcccttaacttttaagtgtgtcaatttggtcccataaatcttcctctgtttactaatgtggtctttt 22620006  T
Q  412 ctgtta 417  Q
    ||||||    
T  22620007 ctgtta 22620012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 376
Target Start/End: Original strand, 8095358 - 8095422
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcc 376  Q
    |||||||||||||||||| | |||||| ||  ||||||||||| |||| ||| ||||||||||||    
T  8095358 ggtcccttaacttattttattttctcagtttggtcccttaactattaagtgtctcaatttggtcc 8095422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 377
Target Start/End: Complemental strand, 9190542 - 9190481
Alignment:
Q  316 ccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcct 377  Q
    ||||||||||||||   |||||| || |||||||||||| |||| ||| |||||||||||||    
T  9190542 ccttaacttattttaatttctcagtttagtcccttaactattaaatgtttcaatttggtcct 9190481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 417
Target Start/End: Complemental strand, 22621238 - 22621133
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtccttt 411  Q
    |||||||||||||||||| | |||||| ||   |||||||||| |||| |||| |||||||||||  |||||  ||||| ||||| | |  ||||||| |    
T  22621238 ggtcccttaacttattttattttctcagtttgatcccttaactattaagtgtggcaatttggtcccataagtcttcctctgtttattaatgtggtcctct 22621139  T
Q  412 ctgtta 417  Q
    ||||||    
T  22621138 ctgtta 22621133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 409
Target Start/End: Original strand, 24068342 - 24068439
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcct 409  Q
    |||||||||||||||||||  || ||| ||  ||||| ||||| | || ||| ||||||||||||  |||||  ||||||||||||| | ||||||||    
T  24068342 ggtcccttaacttatttttggttttcattttggtcccctaactataaagtgtctcaatttggtcccataagtcttcctccgtttactaatttggtcct 24068439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 41522790 - 41522721
Alignment:
Q  314 tcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagt 383  Q
    |||||||||||||||| | |||||| || | ||  |||||| |||| ||||||||||||||||| |||||    
T  41522790 tcccttaacttattttattttctcagtttaatcatttaactattaagtgtgtcaatttggtcctataagt 41522721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 376
Target Start/End: Complemental strand, 35945541 - 35945477
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcc 376  Q
    |||||||||||||||||||| || ||| || |||||||||||| | || ||| ||| ||||||||    
T  35945541 ggtcccttaacttattttttgttttcattttagtcccttaactataaaatgtctcactttggtcc 35945477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 203; Significance: 1e-110; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 298 - 572
Target Start/End: Complemental strand, 26452351 - 26452076
Alignment:
Q  298 ttaatgcatacgcaggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttac 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  26452351 ttaatgcatacgcaggtcccttaacttattttttcttctcacttcagtcccttaacttttaaatgtgtcaatttggtcctgtaagtactcttccgtttac 26452252  T
Q  398 ttagttggtcctttctgttaactttttgnnnnnnn-cgttaactctgtacaggtggttgtccacgttggccaatcacttgaggacatggcaaatcactat 496  Q
    ||||||||||||||||||||| || ||         |||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26452251 ttagttggtcctttctgttaatttgttaaaaaaaaacgttaactatgttcaggtggctgtccacgttggccaatcacttgaggacatggcaaatcactat 26452152  T
Q  497 cagcaatataaaaggggatgaaatgtcaaaaattagggtttcattgatctcattcctccttctctctgctactcca 572  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||    
T  26452151 cagcaatataaaaggggatgaaatgtcaaaaattagggttttattgatctcattcctccttctctcttcttctcca 26452076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 298 - 459
Target Start/End: Original strand, 26446503 - 26446664
Alignment:
Q  298 ttaatgcatacgcaggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttac 397  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| || ||||||    
T  26446503 ttaatgcatacgcatgtcccttaacttattttttcttctcacttcagtctcttaacttttaaatgtgtcaatttggtcctgtaagtactcttctgtttac 26446602  T
Q  398 ttagttggtcctttctgttaactttttgnnnnnnncgttaactctgtacaggtggttgtcca 459  Q
    |||||||||||||||| |||||||||||       |||||||||||||||||||| ||||||    
T  26446603 ttagttggtcctttctattaactttttgaaaaaaacgttaactctgtacaggtggctgtcca 26446664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 376
Target Start/End: Original strand, 13800042 - 13800107
Alignment:
Q  311 aggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcc 376  Q
    ||||||||||||||||||| | |||||| ||  ||||||||||| |||||||||||||||||||||    
T  13800042 aggtcccttaacttattttattttctcagtttggtcccttaactattaattgtgtcaatttggtcc 13800107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 376
Target Start/End: Complemental strand, 8412420 - 8412356
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcc 376  Q
    |||||||||||||||||||| || ||| || |||||| ||||| | || ||| ||||||||||||    
T  8412420 ggtcccttaacttattttttgttttcaatttagtcccctaactataaagtgtctcaatttggtcc 8412356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 298 - 572
Target Start/End: Original strand, 21006138 - 21006413
Alignment:
Q  298 ttaatgcatacgcaggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttac 397  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||    
T  21006138 ttaatacatacgcaggtcccttaacttattttttcttctcactttagtcccttaacttttaaatgtgtcaatttggtcctgtaagttctcttccgtttac 21006237  T
Q  398 ttagttggtcctttctgttaactttttgnnnnnnn-cgttaactctgtacaggtggttgtccacgttggccaatcacttgaggacatggcaaatcactat 496  Q
      ||||| ||||||| ||||||||||||        ||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  21006238 ccagttgatcctttcagttaactttttgaaaaaaaacgttaactctgcacaagtggctgtccacgttggccaatcacttgaggacatggcaaatcactat 21006337  T
Q  497 cagcaatataaaaggggatgaaatgtcaaaaattagggtttcattgatctcattcctccttctctctgctactcca 572  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||    
T  21006338 cagcaatataaaaggggatgaaatgtcaaaaattagggttttattgatctcattcctccttctctcttcttctcca 21006413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 298 - 425
Target Start/End: Complemental strand, 21011926 - 21011799
Alignment:
Q  298 ttaatgcatacgcaggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttac 397  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||||| || ||||||    
T  21011926 ttaatacatacgcaggtcccttaacttattttttcttctcacttcagtcccttaactattaaatgtttcaatttggtcctgtcagtactcttctgtttac 21011827  T
Q  398 ttagttggtcctttctgttaactttttg 425  Q
    ||||||||||||||||||||||||||||    
T  21011826 ttagttggtcctttctgttaactttttg 21011799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 424
Target Start/End: Original strand, 30253630 - 30253710
Alignment:
Q  344 gtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgttaacttttt 424  Q
    |||||| |||| |||| |||||||||||||||   |||||  |||||| |||||||||||||||| || |||||| |||||    
T  30253630 gtccctcaactattaagtgtgtcaatttggtctcataagtcttcctccatttacttagttggtccattttgttaagttttt 30253710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 423
Target Start/End: Original strand, 21790511 - 21790622
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtccttt 411  Q
    |||||| |||||||||||| | | ||| ||  ||||| ||| ||| |||||| |||| |||||||  ||||||  |||||||||||| | ||||||| ||    
T  21790511 ggtcccctaacttatttttgcatttcaatttggtcccctaagtttaaattgtctcaaattggtcccctaagtatacctccgtttactcaattggtccctt 21790610  T
Q  412 ctgttaactttt 423  Q
    ||||||| ||||    
T  21790611 ctgttaattttt 21790622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 398
Target Start/End: Complemental strand, 8188304 - 8188218
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttact 398  Q
    |||||||||||||||||| | || ||| ||   ||| |||||| |||| ||||||||||||||||| |||||  |||||| ||||||    
T  8188304 ggtcccttaacttattttattttttcagtttgatcctttaactattaagtgtgtcaatttggtcctataagtcttcctccatttact 8188218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 11907265 - 11907200
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcct 377  Q
    ||||||||||||||||||   |||||| ||  ||||||||||| |||| ||| |||||||||||||    
T  11907265 ggtcccttaacttattttaatttctcagtttggtcccttaactattaaatgtttcaatttggtcct 11907200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 12831042 - 12830977
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcct 377  Q
    |||||||||||||||||| | |||||| ||   |||||||||| |||| ||| |||||||||||||    
T  12831042 ggtcccttaacttattttattttctcagtttgatcccttaactattaagtgtctcaatttggtcct 12830977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 417
Target Start/End: Original strand, 19050761 - 19050866
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtccttt 411  Q
    |||||||||||||||||||   | ||| ||  ||||| ||||||| || ||| ||||||||||||  ||||||  |||||||||||  |  |||||||||    
T  19050761 ggtcccttaacttatttttggatttcaatttggtcccctaactttaaactgtctcaatttggtcccctaagtatacctccgtttacccaagtggtccttt 19050860  T
Q  412 ctgtta 417  Q
    ||||||    
T  19050861 ctgtta 19050866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 376
Target Start/End: Original strand, 37371069 - 37371133
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcc 376  Q
    |||||||||||||||||||   | ||| ||  ||||||||||||| |||||| ||||||||||||    
T  37371069 ggtcccttaacttatttttgaatttcattttggtcccttaactttaaattgtctcaatttggtcc 37371133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 298 - 466
Target Start/End: Complemental strand, 24502103 - 24501935
Alignment:
Q  298 ttaatgcatacgcaggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttac 397  Q
    ||||||||| | |||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||| |||||||||    
T  24502103 ttaatgcatccccaggtcccttaatttattttttcttctcacttcattcccttaacttttaaatgtgtcaatttggtcctgtaagttctcttccgtttac 24502004  T
Q  398 ttagttggtcctttctgttaactttttgnnnnnnncgttaactctgtacaggtggttgtccacgttggc 466  Q
      ||||| ||||||||||||||||||||       |||||| ||||||||||||| |||||||||||||    
T  24502003 ccagttgatcctttctgttaactttttgaaaaaaacgttaagtctgtacaggtggctgtccacgttggc 24501935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 315 - 421
Target Start/End: Original strand, 48332730 - 48332836
Alignment:
Q  315 cccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctg 414  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| ||| ||||| ||||||||||||||||||||||||||    
T  48332730 cccttaacttattttttcttctcacttcagtcccttaactattaaatgtttcaatttggtcctataaatactcttccgtttacttagttggtcctttctg 48332829  T
Q  415 ttaactt 421  Q
    |||||||    
T  48332830 ttaactt 48332836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 317 - 503
Target Start/End: Complemental strand, 32960314 - 32960126
Alignment:
Q  317 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgtt 416  Q
    ||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||| ||  ||||| | |||||||  ||||  |||||||| ||    
T  32960314 cttaacttattttttcttctcacttcagttccttaactattaaatgtgtcaatttggtcctcta--tactctttcgtttacccagttaatcctttctatt 32960217  T
Q  417 aacttttt----gnnnnnnncgttaactctgtacaggtggttgtccacgttggccaatcacttgaggacatggcaaatcactatcagcaat 503  Q
    ||||||||            | ||||||||| ||| |||||| |||| ||||||||||||||||||||||||| |||||||| ||||||||    
T  32960216 aacttttttttaaaaaaaaactttaactctgcacatgtggttctccatgttggccaatcacttgaggacatggaaaatcactctcagcaat 32960126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 417
Target Start/End: Complemental strand, 24517718 - 24517613
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtccttt 411  Q
    |||||||||||||||||| | |||||| || | |||||||| |||||| ||||||||||||||||  ||| |  ||||| ||||||| |  |||||||||    
T  24517718 ggtcccttaacttattttattttctcagtttaatcccttaatttttaagtgtgtcaatttggtcccataaatcttcctctgtttactaatgtggtccttt 24517619  T
Q  412 ctgtta 417  Q
    ||||||    
T  24517618 ctgtta 24517613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 417
Target Start/End: Original strand, 40109375 - 40109478
Alignment:
Q  314 tcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttct 413  Q
    |||||||||||||||| | |||||| ||   ||||||||||||||| ||||||||||||||||  ||| |  || |||||||||| |  |||||||||||    
T  40109375 tcccttaacttattttattttctcagtttgatcccttaacttttaagtgtgtcaatttggtcccataaatcttcatccgtttactaatgtggtcctttct 40109474  T
Q  414 gtta 417  Q
    ||||    
T  40109475 gtta 40109478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 417
Target Start/End: Original strand, 8092610 - 8092715
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtccttt 411  Q
    |||||||||||||||||| | |||||| |  |||||||||||| |||| ||| |||||||||| |  ||| |  ||||||||||||| | ||||||||||    
T  8092610 ggtcccttaacttattttattttctcagtgtagtcccttaactattaagtgtatcaatttggttccataaatcttcctccgtttactgatttggtccttt 8092709  T
Q  412 ctgtta 417  Q
    | ||||    
T  8092710 ccgtta 8092715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 417
Target Start/End: Complemental strand, 2973110 - 2973007
Alignment:
Q  314 tcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagt-tggtcctttc 412  Q
    |||||||||||||||||| || ||| || |||||||||| | | || ||| ||||||||||||| |||||  | | |||||||| |||| ||||||||||    
T  2973110 tcccttaacttattttttgttttcattttagtcccttaattataaagtgtctcaatttggtcctataagtcttaccccgtttac-tagtgtggtcctttc 2973012  T
Q  413 tgtta 417  Q
    |||||    
T  2973011 tgtta 2973007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 376
Target Start/End: Complemental strand, 14765198 - 14765134
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcc 376  Q
    ||||| |||||||||||| | |||||| ||  ||||||||||| |||| ||||||||||||||||    
T  14765198 ggtcctttaacttattttattttctcagtttggtcccttaactattaagtgtgtcaatttggtcc 14765134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 417
Target Start/End: Complemental strand, 40110754 - 40110651
Alignment:
Q  314 tcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttct 413  Q
    |||||||||||||||| | |||||| ||   |||||||||| |||| ||||||||||||||||  |||||  ||||| ||||| | |  ||||||| |||    
T  40110754 tcccttaacttattttattttctcagtttgatcccttaactattaagtgtgtcaatttggtcccataagtcttcctctgtttattaatgtggtcctctct 40110655  T
Q  414 gtta 417  Q
    ||||    
T  40110654 gtta 40110651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 387
Target Start/End: Original strand, 32959858 - 32959932
Alignment:
Q  313 gtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactc 387  Q
    |||||||||||||||||||| |||||  |||||| ||||||| |||| ||| | ||| ||||| ||||| |||||    
T  32959858 gtcccttaacttattttttcatctcatctcagtctcttaactattaaatgtattaatctggtcatgtaaatactc 32959932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 417
Target Start/End: Original strand, 25035370 - 25035475
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtccttt 411  Q
    |||||||||||||||||||   | ||| ||  ||||| ||||||| |||||| ||||||||||||  ||||||  | |||||||||  |  |||||||||    
T  25035370 ggtcccttaacttatttttgaatttcaatttggtcccctaactttaaattgtctcaatttggtcccctaagtatacttccgtttacccaaatggtccttt 25035469  T
Q  412 ctgtta 417  Q
    ||||||    
T  25035470 ctgtta 25035475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 417
Target Start/End: Original strand, 25040583 - 25040688
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtccttt 411  Q
    |||||||||||||||||||   | ||| ||  ||||| ||||||| |||||| ||||||||||||  ||||||  | |||||||||  |  |||||||||    
T  25040583 ggtcccttaacttatttttgaatttcaatttggtcccctaactttaaattgtctcaatttggtcccctaagtatacttccgtttacccaaatggtccttt 25040682  T
Q  412 ctgtta 417  Q
    ||||||    
T  25040683 ctgtta 25040688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 396
Target Start/End: Original strand, 24516346 - 24516430
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgttta 396  Q
    |||||||||||||||||| | |||| | ||   |||||||||| |||| |||||||||||||||   |||||  |||||||||||    
T  24516346 ggtcccttaacttattttattttctgagtttgatcccttaactattaagtgtgtcaatttggtctcataagtcttcctccgttta 24516430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 314 - 424
Target Start/End: Original strand, 7338156 - 7338266
Alignment:
Q  314 tcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttct 413  Q
    |||||||||||||||||||||||||||||| |||||||||  |||| ||||||||||| ||||||||||| ||| ||||||| |   |||| |||||| |    
T  7338156 tcccttaacttattttttcttctcacttcaatcccttaacaattaaatgtgtcaatttagtcctgtaagttctcttccgtttgcccggttgatccttttt 7338255  T
Q  414 gttaacttttt 424  Q
    |||||||||||    
T  7338256 gttaacttttt 7338266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 398
Target Start/End: Complemental strand, 132104 - 132017
Alignment:
Q  311 aggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttact 398  Q
    ||||||||||||||||||| | |||||| ||  ||||||||||| |||| |||||| |||||||||  |||||  |||||||||||||    
T  132104 aggtcccttaacttattttattttctcagtttggtcccttaactattaagtgtgtcgatttggtcccataagtcttcctccgtttact 132017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 4167465 - 4167534
Alignment:
Q  314 tcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagt 383  Q
    |||||||||||||||| | |||||| || | |||||||||| |||| |||||||||||| |||| |||||    
T  4167465 tcccttaacttattttattttctcagtttaatcccttaactattaagtgtgtcaatttgatcctataagt 4167534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 47537144 - 47537079
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcct 377  Q
    ||||||||||||||||||  ||||||| ||  ||||||||||| |||| ||| |||||||||||||    
T  47537144 ggtcccttaacttattttaacttctcagtttggtcccttaactattaaatgtttcaatttggtcct 47537079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 397
Target Start/End: Complemental strand, 21171590 - 21171505
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttac 397  Q
    |||||||||||||||||||   | ||| ||  ||||| ||||||| |||||| ||||||||||||  ||||||  |||||||||||    
T  21171590 ggtcccttaacttatttttggatttcaatttggtcccctaactttaaattgtctcaatttggtcccctaagtatacctccgtttac 21171505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 398
Target Start/End: Original strand, 48866158 - 48866239
Alignment:
Q  317 cttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttact 398  Q
    ||||||||||||| | |||||| || ||||||| |||| |||| ||||||||||||||||| |||||  || ||||||||||    
T  48866158 cttaacttattttattttctcagtttagtccctgaactattaagtgtgtcaatttggtcctataagtcttcttccgtttact 48866239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 417
Target Start/End: Complemental strand, 48867534 - 48867429
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtccttt 411  Q
    |||||||||||||||||| | |||||| ||  ||||||||||| |||| ||||||||||||||||  | |||  | || |||||||| |  |||||||||    
T  48867534 ggtcccttaacttattttattttctcaatttggtcccttaactattaagtgtgtcaatttggtcccattagtctttctacgtttactaatgtggtccttt 48867435  T
Q  412 ctgtta 417  Q
    ||||||    
T  48867434 ctgtta 48867429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 418
Target Start/End: Original strand, 23886712 - 23886818
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtccttt 411  Q
    ||||||||||||||||||||  | ||| ||   |||||||||||| || ||| ||||||||||||  ||| |   ||||||||||| ||| |||||| ||    
T  23886712 ggtcccttaacttattttttaatttcatttttatcccttaactttaaaatgtctcaatttggtcccataactttgcctccgtttacctaggtggtccatt 23886811  T
Q  412 ctgttaa 418  Q
    |||||||    
T  23886812 ctgttaa 23886818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 377
Target Start/End: Original strand, 54109508 - 54109573
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcct 377  Q
    |||||||||||||||||||   | ||| || |||||||||||||| ||| || |||||||||||||    
T  54109508 ggtcccttaacttatttttgaatttcattttagtcccttaactttaaatcgtctcaatttggtcct 54109573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 373
Target Start/End: Original strand, 12060671 - 12060731
Alignment:
Q  313 gtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttgg 373  Q
    ||||||||||||||||| | |||||| || |||| ||||||| |||| ||| |||||||||    
T  12060671 gtcccttaacttattttattttctcagtttagtctcttaactattaagtgtctcaatttgg 12060731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 376
Target Start/End: Complemental strand, 12062488 - 12062424
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcc 376  Q
    |||||||||||||||||| | || ||| ||  ||||||||||| |||| ||| ||||||||||||    
T  12062488 ggtcccttaacttattttattttttcagtttggtcccttaactattaagtgtctcaatttggtcc 12062424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 376
Target Start/End: Complemental strand, 44384400 - 44384336
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcc 376  Q
    |||||||||||||||||||   | ||| || |||||||||||||| || ||| ||||||||||||    
T  44384400 ggtcccttaacttatttttgaatttcattttagtcccttaactttaaactgtctcaatttggtcc 44384336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 380
Target Start/End: Original strand, 54752628 - 54752696
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgta 380  Q
    |||||||||||||||||||  || ||| || |||||| ||||| | || ||| ||||||||||||||||    
T  54752628 ggtcccttaacttatttttcattttcaatttagtcccctaactataaagtgtctcaatttggtcctgta 54752696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 7983797 - 7983728
Alignment:
Q  314 tcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagt 383  Q
    |||||||||||||||| | |||||| || | | |||||||| |||| ||||||||||||||||| |||||    
T  7983797 tcccttaacttattttattttctcagtttaattccttaactattaagtgtgtcaatttggtcctataagt 7983728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 377
Target Start/End: Complemental strand, 14510627 - 14510548
Alignment:
Q  298 ttaatgcatacgcaggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcct 377  Q
    ||||| ||||| | ||||| |||||||||||| | |||| | || |||||||||||| |||| ||| |||||||||||||    
T  14510627 ttaatacataccccggtcctttaacttattttattttcttagtttagtcccttaactattaagtgtctcaatttggtcct 14510548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 423
Target Start/End: Complemental strand, 38801302 - 38801191
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtccttt 411  Q
    |||||| |||||||||||| | | ||| ||  ||||| ||||||| |||||| |||| |||||||  ||||||  |||| ||||||| | ||||||| ||    
T  38801302 ggtcccctaacttatttttgcatttcaatttggtcccctaactttaaattgtctcaaattggtcccctaagtatacctctgtttactcaattggtccctt 38801203  T
Q  412 ctgttaactttt 423  Q
    ||||||| ||||    
T  38801202 ctgttaattttt 38801191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 397
Target Start/End: Original strand, 20948414 - 20948499
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttac 397  Q
    |||||||||||||||||||   | ||| ||  ||||||||||||| |||||| ||||||||||||  ||| ||  |||||||||||    
T  20948414 ggtcccttaacttatttttgaatttcaatttggtcccttaactttaaattgtctcaatttggtcccttaattatacctccgtttac 20948499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 372
Target Start/End: Complemental strand, 25570974 - 25570914
Alignment:
Q  312 ggtcccttaacttattttttcttctcacttcagtcccttaacttttaattgtgtcaatttg 372  Q
    |||||||||||||||||| | |||||| |  |||||||||||| |||| ||| ||||||||    
T  25570974 ggtcccttaacttattttattttctcagtgtagtcccttaactattaagtgtttcaatttg 25570914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University