View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7480_low_5 (Length: 297)
Name: NF7480_low_5
Description: NF7480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7480_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 288
Target Start/End: Complemental strand, 2879718 - 2879443
Alignment:
| Q |
13 |
caaccttatcatacacaacattagcaccactctgtttgttaaatttcaaaatctcattataattcatactaccatccgtgtcagttgcaggccccactgc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2879718 |
caaccttatcatacacaacattagcaccactctgtttgttaaatttcaaaatctcattataattcatactaccatccgtgtcagttgcaggccccaccgc |
2879619 |
T |
|
| Q |
113 |
ctccgctcccaccccattgacatttggatccttaagctcccacgcccgtccatataaagccaaacccataaccaacttttcaggtcgaacacccgatttg |
212 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2879618 |
ctccgctcccaccccgttgacatttggatccttaagctcccacgcccgtccatataaagccaaacccataaccaacttttcaggtcgaacacccgatttg |
2879519 |
T |
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| Q |
213 |
atccacgagtggagtccaaaattggtactaatttcggacttcgagtcatacaaagcagcattaaagtcagtattat |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2879518 |
atccacgagtggagtccaaaattggtactaatttcggacttcgagtcatacaaagcagcattaaagtcggtattat |
2879443 |
T |
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