View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7480_low_6 (Length: 267)
Name: NF7480_low_6
Description: NF7480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7480_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 113 - 255
Target Start/End: Complemental strand, 7856860 - 7856718
Alignment:
| Q |
113 |
acagtcttacacgccttccgccgccgaaaatggaccacacagatcggcaccacacatcaccaccactcccttatgcattgccagcaccatgcaaggtaca |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7856860 |
acagtcttacacgccttccgccgccaaaaatggaccacacagatcggcaccacacatcaccaccactcccttatgcatcgccagcaccatgcaaggtaca |
7856761 |
T |
|
| Q |
213 |
cccttgaaaccacctagaacaccacaggaacggaacaacacca |
255 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7856760 |
cccttgaaaccacctaaaacaccacaggaacggaacaacacca |
7856718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 7856980 - 7856945
Alignment:
| Q |
24 |
gcaccacacattaccccctcgatacaacacgtccgt |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
7856980 |
gcaccacacattaccccctcgatacaacacgtccgt |
7856945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University