View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7480_low_7 (Length: 261)
Name: NF7480_low_7
Description: NF7480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7480_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 7 - 256
Target Start/End: Complemental strand, 2017506 - 2017257
Alignment:
| Q |
7 |
caaggattgttccttggacaacacttttctcataaattgcacctaagcannnnnnnnnnnnnnnnnaacctcaacacatttacctttcctgccacatact |
106 |
Q |
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| T |
2017506 |
caaggattgttccttggacaacacttttctcataaattgcaccaaagcatcttcttcttcttcttcaacctcaacccatatacctttcctgccacatact |
2017407 |
T |
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| Q |
107 |
aatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgctacgacgaaaagagcatacaggtgaaccaat |
206 |
Q |
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| T |
2017406 |
aatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgctacgacgaaaagagcatacaggtgaaccaat |
2017307 |
T |
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| Q |
207 |
cattttggggtatcagaatgacacatcttcccgtctcatcaacacgaaac |
256 |
Q |
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| T |
2017306 |
cattttggggtatcagaatgacacattttcccgtctcatcaacacgaaac |
2017257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 177
Target Start/End: Original strand, 40570921 - 40571025
Alignment:
| Q |
73 |
aacctcaacacatttacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgat |
172 |
Q |
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| T |
40570921 |
aacctcaacagacgtaccattcttgccacagactaatcaaagtgttctaaacatctcactcgacggtgaactgcgtgctgcatggccagtagcaagtgat |
40571020 |
T |
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| Q |
173 |
tgcta |
177 |
Q |
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||||| |
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| T |
40571021 |
tgcta |
40571025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 177
Target Start/End: Original strand, 40577344 - 40577448
Alignment:
| Q |
73 |
aacctcaacacatttacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgat |
172 |
Q |
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| T |
40577344 |
aacctcaacagaggtaccattcttgccacagactaatcaaagtgttctaaacatctcacttaatggtgaacttcacgttgcatggccagtagccagctat |
40577443 |
T |
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| Q |
173 |
tgcta |
177 |
Q |
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||||| |
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| T |
40577444 |
tgcta |
40577448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 40566267 - 40566340
Alignment:
| Q |
106 |
taatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgctacg |
179 |
Q |
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| T |
40566267 |
taatcaaaatgtcctaaatatctcactcaatggtgaattgcacgttgcatggccagtagccagcgattgctacg |
40566340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 40595654 - 40595727
Alignment:
| Q |
104 |
actaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgattgcta |
177 |
Q |
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| T |
40595654 |
actaatcaacgtgtcttaaatatatcacttaatggtgaactgcatgttgcatggccagtagccagacattgcta |
40595727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 40600307 - 40600359
Alignment:
| Q |
116 |
gtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccag |
168 |
Q |
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| T |
40600307 |
gtcctaaatatctcactcaatggtgaattgcgtgtcgcatggccagtagccag |
40600359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 177
Target Start/End: Original strand, 8490588 - 8490692
Alignment:
| Q |
73 |
aacctcaacacatttacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagccagcgat |
172 |
Q |
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| T |
8490588 |
aacctcaacagacgtaccattcttgccacagagtaatcaaagtgttctaaacatctcactcgatggtgaactgcatgttgcatggccaataggcagtgat |
8490687 |
T |
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| Q |
173 |
tgcta |
177 |
Q |
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||||| |
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| T |
8490688 |
tgcta |
8490692 |
T |
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