View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7480_low_9 (Length: 250)

Name: NF7480_low_9
Description: NF7480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7480_low_9
NF7480_low_9
[»] chr8 (5 HSPs)
chr8 (109-241)||(27635070-27635202)
chr8 (16-75)||(27635201-27635260)
chr8 (190-227)||(6760929-6760966)
chr8 (194-227)||(39460991-39461024)
chr8 (195-227)||(12625995-12626027)
[»] chr7 (1 HSPs)
chr7 (197-227)||(2541019-2541049)
[»] chr5 (5 HSPs)
chr5 (197-227)||(16880647-16880677)
chr5 (195-236)||(32354223-32354264)
chr5 (195-227)||(16957419-16957451)
chr5 (195-227)||(38879688-38879720)
chr5 (195-227)||(41014423-41014455)
[»] chr3 (4 HSPs)
chr3 (197-227)||(14987086-14987116)
chr3 (194-227)||(10484613-10484646)
chr3 (194-227)||(13628787-13628820)
chr3 (195-227)||(54032569-54032601)
[»] chr1 (4 HSPs)
chr1 (193-227)||(10668355-10668389)
chr1 (193-227)||(20004086-20004120)
chr1 (195-227)||(9939592-9939624)
chr1 (195-227)||(14617166-14617198)
[»] chr2 (4 HSPs)
chr2 (190-227)||(10546268-10546305)
chr2 (194-227)||(22371217-22371250)
chr2 (195-227)||(9671284-9671316)
chr2 (191-227)||(36871596-36871632)
[»] chr6 (1 HSPs)
chr6 (196-236)||(6808491-6808531)
[»] chr4 (1 HSPs)
chr4 (191-227)||(20639652-20639688)


Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 109 - 241
Target Start/End: Complemental strand, 27635202 - 27635070
Alignment:
Q  109 actaagaatgggaacttcccttgcagtgtcacctagtctccaatgagtaaaagtaatgacataagatgaagttacataagaattaataaaagggaaaccc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27635202 actaagaatgggaacttcccttgcagtgtcacctagtctccaatgactaaaagtaatgacataagatgaagttacataagaattaataaaagggaaaccc 27635103  T
Q  209 ggtgcactaaagctcccgctttcacaggttctg 241  Q
    |||||||||||||||||||||||||||| ||||    
T  27635102 ggtgcactaaagctcccgctttcacagggtctg 27635070  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 27635260 - 27635201
Alignment:
Q  16 tgtggagaacccatatctgcatcatacactcttgtgctctgatatctaacacttaagaac 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27635260 tgtggagaacccatatctgcatcatacactcttgtgctctgatatctaacacttaagaac 27635201  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 6760966 - 6760929
Alignment:
Q  190 attaataaaagggaaacccggtgcactaaagctcccgc 227  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  6760966 attaaaaaaagggcaacccggtgcactaaagctcccgc 6760929  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 39460991 - 39461024
Alignment:
Q  194 ataaaagggaaacccggtgcactaaagctcccgc 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  39460991 ataaaagggcaacccggtgcactaaagctcccgc 39461024  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 12626027 - 12625995
Alignment:
Q  195 taaaagggaaacccggtgcactaaagctcccgc 227  Q
    |||||||| ||||||||||||||||||||||||    
T  12626027 taaaagggcaacccggtgcactaaagctcccgc 12625995  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 227
Target Start/End: Original strand, 2541019 - 2541049
Alignment:
Q  197 aaagggaaacccggtgcactaaagctcccgc 227  Q
    |||||||||||||||||||||||||||||||    
T  2541019 aaagggaaacccggtgcactaaagctcccgc 2541049  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 227
Target Start/End: Original strand, 16880647 - 16880677
Alignment:
Q  197 aaagggaaacccggtgcactaaagctcccgc 227  Q
    |||||||||||||||||||||||||||||||    
T  16880647 aaagggaaacccggtgcactaaagctcccgc 16880677  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 32354264 - 32354223
Alignment:
Q  195 taaaagggaaacccggtgcactaaagctcccgctttcacagg 236  Q
    |||||||| |||||||||||||||||||||||| | ||||||    
T  32354264 taaaagggcaacccggtgcactaaagctcccgcatacacagg 32354223  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 16957451 - 16957419
Alignment:
Q  195 taaaagggaaacccggtgcactaaagctcccgc 227  Q
    |||||||| ||||||||||||||||||||||||    
T  16957451 taaaagggcaacccggtgcactaaagctcccgc 16957419  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 38879720 - 38879688
Alignment:
Q  195 taaaagggaaacccggtgcactaaagctcccgc 227  Q
    |||||||| ||||||||||||||||||||||||    
T  38879720 taaaagggcaacccggtgcactaaagctcccgc 38879688  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 41014455 - 41014423
Alignment:
Q  195 taaaagggaaacccggtgcactaaagctcccgc 227  Q
    |||||||| ||||||||||||||||||||||||    
T  41014455 taaaagggcaacccggtgcactaaagctcccgc 41014423  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 227
Target Start/End: Complemental strand, 14987116 - 14987086
Alignment:
Q  197 aaagggaaacccggtgcactaaagctcccgc 227  Q
    |||||||||||||||||||||||||||||||    
T  14987116 aaagggaaacccggtgcactaaagctcccgc 14987086  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 10484613 - 10484646
Alignment:
Q  194 ataaaagggaaacccggtgcactaaagctcccgc 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  10484613 ataaaagggcaacccggtgcactaaagctcccgc 10484646  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 13628787 - 13628820
Alignment:
Q  194 ataaaagggaaacccggtgcactaaagctcccgc 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  13628787 ataaaagggcaacccggtgcactaaagctcccgc 13628820  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 54032569 - 54032601
Alignment:
Q  195 taaaagggaaacccggtgcactaaagctcccgc 227  Q
    |||||||| ||||||||||||||||||||||||    
T  54032569 taaaagggcaacccggtgcactaaagctcccgc 54032601  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 227
Target Start/End: Complemental strand, 10668389 - 10668355
Alignment:
Q  193 aataaaagggaaacccggtgcactaaagctcccgc 227  Q
    |||||||||| ||||||||||||||||||||||||    
T  10668389 aataaaagggcaacccggtgcactaaagctcccgc 10668355  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 20004086 - 20004120
Alignment:
Q  193 aataaaagggaaacccggtgcactaaagctcccgc 227  Q
    |||||||||| ||||||||||||||||||||||||    
T  20004086 aataaaagggcaacccggtgcactaaagctcccgc 20004120  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 9939624 - 9939592
Alignment:
Q  195 taaaagggaaacccggtgcactaaagctcccgc 227  Q
    |||||||| ||||||||||||||||||||||||    
T  9939624 taaaagggtaacccggtgcactaaagctcccgc 9939592  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 14617198 - 14617166
Alignment:
Q  195 taaaagggaaacccggtgcactaaagctcccgc 227  Q
    |||||||| ||||||||||||||||||||||||    
T  14617198 taaaagggtaacccggtgcactaaagctcccgc 14617166  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 10546305 - 10546268
Alignment:
Q  190 attaataaaagggaaacccggtgcactaaagctcccgc 227  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  10546305 attaaaaaaagggcaacccggtgcactaaagctcccgc 10546268  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 22371250 - 22371217
Alignment:
Q  194 ataaaagggaaacccggtgcactaaagctcccgc 227  Q
    ||||||||| ||||||||||||||||||||||||    
T  22371250 ataaaagggcaacccggtgcactaaagctcccgc 22371217  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 9671316 - 9671284
Alignment:
Q  195 taaaagggaaacccggtgcactaaagctcccgc 227  Q
    |||||||| ||||||||||||||||||||||||    
T  9671316 taaaagggcaacccggtgcactaaagctcccgc 9671284  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 36871632 - 36871596
Alignment:
Q  191 ttaataaaagggaaacccggtgcactaaagctcccgc 227  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  36871632 ttaaaaaaagggcaacccggtgcactaaagctcccgc 36871596  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 6808531 - 6808491
Alignment:
Q  196 aaaagggaaacccggtgcactaaagctcccgctttcacagg 236  Q
    ||||||| |||||||||||||||||||||||| | ||||||    
T  6808531 aaaagggcaacccggtgcactaaagctcccgcatacacagg 6808491  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 20639652 - 20639688
Alignment:
Q  191 ttaataaaagggaaacccggtgcactaaagctcccgc 227  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  20639652 ttaaaaaaagggcaacccggtgcactaaagctcccgc 20639688  T

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