View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7481_high_10 (Length: 243)
Name: NF7481_high_10
Description: NF7481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7481_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 8193397 - 8193617
Alignment:
| Q |
11 |
aggataagcgtattaaatgaaaagaaactaaaaaagtgctgctaactgcgccccatttgattatggatgctggtgctccattttcattcttaaataaaag |
110 |
Q |
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| T |
8193397 |
aggataagcttattaaatgaaaagaaactaaaaaagtgctgctaactgcgccccatttgattatggattctggtgctccattttcattcttaaataaaag |
8193496 |
T |
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| Q |
111 |
ctttgcagtcacccattcactcaactctatacacaccttacttggtgttagcattgtgctgtgtttgtccttttggaatgaaggcttccgtcgtaggtcc |
210 |
Q |
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| T |
8193497 |
ctttgcagtcacccattcactcaactctatacacaccttacttggtgttagcattgtgctgtgtttgttcttttggaatgaaggcttccgtcgtaggtcc |
8193596 |
T |
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| Q |
211 |
tacagttaaaaatcgtgtgtg |
231 |
Q |
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| T |
8193597 |
tacagttaaaaatcgtgtgtg |
8193617 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 38102599 - 38102567
Alignment:
| Q |
23 |
ttaaatgaaaagaaactaaaaaagtgctgctaa |
55 |
Q |
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| T |
38102599 |
ttaaatgaaaagaaactaaaagagtgctgctaa |
38102567 |
T |
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