View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7481_high_2 (Length: 462)

Name: NF7481_high_2
Description: NF7481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7481_high_2
NF7481_high_2
[»] chr7 (10 HSPs)
chr7 (3-404)||(26855182-26855583)
chr7 (16-403)||(35213102-35213490)
chr7 (218-403)||(4106885-4107072)
chr7 (96-404)||(38488841-38489150)
chr7 (228-400)||(36031554-36031726)
chr7 (30-136)||(27724402-27724507)
chr7 (42-128)||(25944095-25944181)
chr7 (93-163)||(34103189-34103259)
chr7 (228-281)||(27724599-27724652)
chr7 (87-136)||(28327093-28327142)
[»] chr5 (13 HSPs)
chr5 (3-403)||(21368188-21368586)
chr5 (36-404)||(5099940-5100308)
chr5 (16-404)||(979370-979760)
chr5 (251-403)||(35100975-35101128)
chr5 (93-281)||(379505-379693)
chr5 (93-160)||(475926-475993)
chr5 (345-403)||(34373235-34373293)
chr5 (329-404)||(18718556-18718631)
chr5 (235-281)||(14055141-14055187)
chr5 (103-160)||(41612413-41612470)
chr5 (371-403)||(16906777-16906809)
chr5 (96-160)||(17431225-17431289)
chr5 (81-163)||(16906995-16907077)
[»] chr2 (14 HSPs)
chr2 (3-404)||(144294-144695)
chr2 (20-404)||(32623828-32624212)
chr2 (16-403)||(11195820-11196208)
chr2 (94-163)||(12562732-12562801)
chr2 (96-160)||(40110063-40110127)
chr2 (84-163)||(11579891-11579970)
chr2 (93-160)||(17689711-17689778)
chr2 (367-404)||(18634432-18634469)
chr2 (78-163)||(18634675-18634760)
chr2 (357-404)||(18739759-18739807)
chr2 (96-160)||(19469250-19469314)
chr2 (246-281)||(31265817-31265852)
chr2 (370-403)||(7300149-7300182)
chr2 (81-133)||(9005576-9005628)
[»] chr4 (9 HSPs)
chr4 (3-404)||(20543553-20543955)
chr4 (3-404)||(43517000-43517402)
chr4 (27-403)||(27299634-27300011)
chr4 (94-220)||(19119730-19119856)
chr4 (345-403)||(3098500-3098558)
chr4 (235-281)||(9690014-9690060)
chr4 (102-152)||(21393766-21393816)
chr4 (366-396)||(56338134-56338164)
chr4 (249-281)||(53569601-53569633)
[»] chr6 (9 HSPs)
chr6 (3-404)||(14687278-14687678)
chr6 (126-404)||(14320514-14320793)
chr6 (90-136)||(2710071-2710117)
chr6 (345-404)||(2710324-2710383)
chr6 (93-160)||(22532230-22532297)
chr6 (96-160)||(25349936-25350000)
chr6 (93-160)||(2364818-2364885)
chr6 (96-163)||(26513434-26513501)
chr6 (343-396)||(22531994-22532049)
[»] chr1 (13 HSPs)
chr1 (3-403)||(33150463-33150865)
chr1 (126-404)||(52028152-52028431)
chr1 (3-404)||(13868085-13868487)
chr1 (87-404)||(45794899-45795217)
chr1 (27-404)||(5808229-5808602)
chr1 (3-404)||(26510627-26511037)
chr1 (296-403)||(34352493-34352601)
chr1 (31-161)||(1248884-1249014)
chr1 (81-160)||(49458443-49458522)
chr1 (93-160)||(34824838-34824905)
chr1 (99-160)||(52691249-52691310)
chr1 (81-152)||(49969048-49969119)
chr1 (87-152)||(36928888-36928953)
[»] chr3 (14 HSPs)
chr3 (16-404)||(40513989-40514378)
chr3 (87-403)||(20857428-20857742)
chr3 (10-300)||(34828992-34829282)
chr3 (87-160)||(20857941-20858014)
chr3 (81-266)||(35216249-35216434)
chr3 (81-160)||(31674643-31674722)
chr3 (81-160)||(31921698-31921777)
chr3 (96-160)||(53941032-53941096)
chr3 (92-151)||(29498146-29498205)
chr3 (235-281)||(46249359-46249405)
chr3 (347-403)||(34828877-34828934)
chr3 (93-160)||(11237519-11237586)
chr3 (81-152)||(47536989-47537060)
chr3 (249-281)||(14306864-14306896)
[»] chr8 (9 HSPs)
chr8 (27-403)||(9510264-9510642)
chr8 (27-404)||(6244616-6244995)
chr8 (3-158)||(25900749-25900904)
chr8 (93-160)||(6985098-6985165)
chr8 (96-160)||(25192802-25192866)
chr8 (81-160)||(3938928-3939007)
chr8 (342-403)||(25900493-25900555)
chr8 (105-139)||(9424992-9425026)
chr8 (102-152)||(26658695-26658745)
[»] scaffold0555 (1 HSPs)
scaffold0555 (26-160)||(7381-7515)


Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 3 - 404
Target Start/End: Complemental strand, 26855583 - 26855182
Alignment:
Q  3 ggtgctgacccttttaatattgctgaccatttcattcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttac 102  Q
    |||||||||||||||||||||  |||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  26855583 ggtgctgacccttttaatattaatgaccatttcattcagtttattcactctacaggtcactcaaaggctcgtcagtcatttcttcaacttatttggttac 26855484  T
Q  103 tttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgatttcattcttt 202  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||  | |||||||||||||||||||||||||||||    
T  26855483 tttgtgtttgggtggtttggaacgaacgtaataataggctttttaataatatccaaaccacagttgacaatctagcagataaagttcgatttcattcttt 26855384  T
Q  203 atggtggcttcaagctaacaaagcaaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccattgctttga 302  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26855383 atggtggcttcaagctaacaacgcaaatttcatgtatggtacccaacgatggtggtcggaccctttattttgtttgggtttagatcgaccattgttttga 26855284  T
Q  303 ctctaatttgtatgtttgactcatattaggggtgacacttttagtacatcttgtacttaggtgttcactgccgttgttaatatattccatttttatgtct 402  Q
    ||||| |||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26855283 ctctattttgtatgtttgactgtttttaggggtgacacttttagtacatcttgtacttaggtgttcactgccgctgttaatatattccatttttatgtct 26855184  T
Q  403 tc 404  Q
    ||    
T  26855183 tc 26855182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 16 - 403
Target Start/End: Complemental strand, 35213490 - 35213102
Alignment:
Q  16 ttaatattgctgaccatttcattcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttactttgtgtttgggt 115  Q
    ||||||||| |||||||||||||||||| ||||| |||||||| ||||||  ||||||| | || || || ||||||||||||||||| ||||||||| |    
T  35213490 ttaatattgatgaccatttcattcagttcactcattctacaggtcactcacgggctcgtcaatccttcctacaacttatttggttactctgtgtttggtt 35213391  T
Q  116 ggtttggaacgaacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgatttcattctttatggtggcttcaa 215  Q
    ||||||||| ||||||||||||| ||||| || |||||||||||| ||    ||||| |||| ||| ||||||  || ||| ||||| |||||| |  |     
T  35213390 ggtttggaatgaacgtaataatatactttatactaatatccaaacaaccatggaacagctagtagaaaaagttaaatatcactctttgtggtggttaaag 35213291  T
Q  216 gctaacaaagcaaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccattgctttgactctaatttgtat 315  Q
    ||||| || || ||||| ||||| ||||| |||||||||||||||||| ||||||| |||| |||| |  | |||||||  | ||||||||   ||||||    
T  35213290 gctaataaggccaattttatgtacggtacacaaagatggtggtcggacgctttattatgttcgggtatcaaccgaccatcacattgactctttattgtat 35213191  T
Q  316 gtttgactcatattaggggtgacacttttagtacatcttgtacttaggtg-ttcactgccgttgttaatatattccatttttatgtctt 403  Q
    ||||||||  |  |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  35213190 gtttgactatttctaggggtggcacttttagtacatcttgtacttaggtgtttcactgccgttgttaatatatcccatttttatgtctt 35213102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 218 - 403
Target Start/End: Original strand, 4106885 - 4107072
Alignment:
Q  218 taacaaagcaaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccattgctttgactctaatttgtatgt 317  Q
    ||||||||| ||||| ||||||||||   ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| || |||||||||    
T  4106885 taacaaagccaattttatgtatggtatttaaagatggtggtcggaccctttattatgtttgggtttagatcgacctttgttttgactttactttgtatgt 4106984  T
Q  318 ttgactcatatta-ggggtgacacttttagtacatcttgtacttaggtg-ttcactgccgttgttaatatattccatttttatgtctt 403  Q
    ||||||  ||||| ||||||||| |||||||||||||| ||||||| || |||||||||||||||||||||||| |||||||||||||    
T  4106985 ttgactgttattagggggtgacatttttagtacatcttatacttagatgtttcactgccgttgttaatatattcaatttttatgtctt 4107072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 96 - 404
Target Start/End: Original strand, 38488841 - 38489150
Alignment:
Q  96 tggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgatttc 195  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||    ||||| |||| ||| ||||||  || ||    
T  38488841 tggttactttgtgtttggctggtttggaatgaacgtaataatagactttataataatatccaaacaaccatggaacagctagtagaaaaagttaaatatc 38488940  T
Q  196 attctttatggtggcttcaagctaacaaagcaaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccatt 295  Q
    | ||||| |||||| |  | ||||| ||  | || || ||||| ||||| |||||||||||||| ||||||||||| |||||| || | ||  ||||||     
T  38488941 actctttgtggtggttaaaggctaataagaccaactttatgtacggtacacaaagatggtggtcagaccctttattatgtttgagtatcgactgaccatc 38489040  T
Q  296 gctttgactctaatttgtatgtttgactcatattaggggtgacacttttagtacatcttgtacttaggtgtt-cactgccgttgttaatatattccattt 394  Q
     | ||||||||   ||||||||||||||  |  ||||| ||||||||||| ||||||||||| | ||||||| |||||||||||||| ||||| ||||||    
T  38489041 acattgactcttcattgtatgtttgactatttctagggatgacacttttaatacatcttgtattaaggtgtttcactgccgttgttattatataccattt 38489140  T
Q  395 ttatgtcttc 404  Q
    ||||||||||    
T  38489141 ttatgtcttc 38489150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 228 - 400
Target Start/End: Complemental strand, 36031726 - 36031554
Alignment:
Q  228 aatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccattgctttgactctaatttgtatgtttgactcata 327  Q
    ||||| ||||| |||||  ||||||||||||||||||||||||| |||||||||||  | |||||||  | || |||||   ||||||| ||||||  |     
T  36031726 aattttatgtacggtacataaagatggtggtcggaccctttattatgtttgggtttcaaccgaccatcacattaactcttcattgtatggttgactattt 36031627  T
Q  328 ttaggggtgacacttttagtacatcttgtacttaggtg-ttcactgccgttgttaatatattccatttttatgt 400  Q
     || |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  36031626 ctaagggtgacacttttaatacatcttgtacttaggtgtttcactgccgttgttaatatatt-catttttatgt 36031554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 27724402 - 27724507
Alignment:
Q  30 catttcattcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttactttgtgtttgggtggtttggaacgaac 129  Q
    |||||| |||| ||||||||||||||||| |||| || ||| |||  ||||||| | ||||| || ||| ||||||| |||||| || ||||||| ||||    
T  27724402 catttccttcaatttactcactctacaggacactgaa-ggcgcgtcggtcatttttacaactaatatggctactttgcgtttggttgatttggaatgaac 27724500  T
Q  130 gtaataa 136  Q
    |||||||    
T  27724501 gtaataa 27724507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 25944095 - 25944181
Alignment:
Q  42 tttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttactttgtgtttgggtggtttggaacgaa 128  Q
    |||||||||| |||||| || |||||||||||  |||| ||| | ||||| |||||| | ||||| |||||| || |||||||||||    
T  25944095 tttactcactttacaggtcattcaaaggctcgcaagtcgtttttacaactaatttggcttctttgcgtttggttgatttggaacgaa 25944181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 34103259 - 34103189
Alignment:
Q  93 atttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaaccac 163  Q
    |||||||||||| |||| ||||| |||||||| |||| |||||| |   | ||||||||||||||||||||    
T  34103259 atttggttacttagtgtctgggttgtttggaatgaacataataacatggtatttaataatatccaaaccac 34103189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 27724599 - 27724652
Alignment:
Q  228 aatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggt 281  Q
    ||||| ||||| ||| | ||||||||||||||||| |||||| |||||||||||    
T  27724599 aattttatgtacggttctcaaagatggtggtcggatcctttactttgtttgggt 27724652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 28327142 - 28327093
Alignment:
Q  87 caacttatttggttactttgtgtttgggtggtttggaacgaacgtaataa 136  Q
    |||||||||||| | ||||||| |||||| |||||||| |||||||||||    
T  28327142 caacttatttggcttctttgtgcttgggttgtttggaatgaacgtaataa 28327093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 3 - 403
Target Start/End: Original strand, 21368188 - 21368586
Alignment:
Q  3 ggtgctgacccttttaatattgctgaccatttcattcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttac 102  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||    
T  21368188 ggtgctgaccctcttaatattgatgaccatttcattcagtttactcactctacaggtcactcaaaggctcgtcagtcattccttcaacttatttggttac 21368287  T
Q  103 tttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgatttcattcttt 202  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21368288 t--gtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaaccacagttgaacaactagcagataaagttcgatttcattcttt 21368385  T
Q  203 atggtggcttcaagctaacaaagcaaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccattgctttga 302  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||    
T  21368386 atggtggcttcaagctaacaaagcaaaattcatgtatggtacccaaagatggtggtcggatcctttattttgtttgagtttagatcgaccattgttttga 21368485  T
Q  303 ctctaatttgtatgtttgactcatattaggggtgacacttttagtacatcttgtacttaggtgttcactgccgttgttaatatattccatttttatgtct 402  Q
    ||||| ||||||| |||||||  ||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21368486 ctctattttgtatatttgactgttattaggggcggcacttttagtacatcttgtacttaggtgttcgctgccgttgttaatatattccatttttatgtct 21368585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 36 - 404
Target Start/End: Original strand, 5099940 - 5100308
Alignment:
Q  36 attcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttactttgtgtttgggtggtttggaacgaacgtaata 135  Q
    |||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5099940 attcagtttattcactctacaggtcactcaaaggctcgtcagtcatttcttcaacttatttggttactttgtgtttgggtggtttggaacgaacgtaata 5100039  T
Q  136 atagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgatttcattctttatggtggcttcaagctaacaaagcaaatttcat 235  Q
    |||| ||||||||||||||||||||||||| |||  | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  5100040 ataggctttttaataatatccaaaccacagttgacaatctagcagataaagttcgatttcattctttatggtggcttcaagctaataaagccaatttcat 5100139  T
Q  236 gtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccattgctttgactctaatttgtatgtttgactcatattaggggt 335  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||  | ||||||||    
T  5100140 gtatggtacccaacgatggtggtcggaccctttattttgtttgggtctagatcgaccattgctttgactcttttttgtatgtttgactgtttttaggggt 5100239  T
Q  336 gacacttttagtacatcttgtacttaggtgttcactgccgttgttaatatattccatttttatgtcttc 404  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5100240 gacacctttagtacatcttgtacttaggcgttcactgccgttgttaatatattccatttttatgtcttc 5100308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 16 - 404
Target Start/End: Original strand, 979370 - 979760
Alignment:
Q  16 ttaatattgctgaccatttcattcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttactttgtgtttgggt 115  Q
    ||||||||| |||||||||||||||||| ||||| |||||||| ||||||| ||||||  | ||||| ||||||||||||| ||||||||| |||||| |    
T  979370 ttaatattgatgaccatttcattcagttcactcattctacaggtcactcaagggctcgacaatcattccttcaacttatttagttactttgcgtttggct 979469  T
Q  116 ggtttggaacgaacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgatttcattctttatggtggcttcaa 215  Q
    | ||||||| ||||||||||||||||||| ||||||||| ||||| ||    ||||| | || ||| ||| ||  || ||| ||||| | ||||||  |     
T  979470 gatttggaatgaacgtaataatagactttataataatattcaaacaaccatggaacagcaagtagaaaaatttaaatatcactctttgtagtggctaaag 979569  T
Q  216 gctaacaaagcaaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccattgctttgactctaatttgtat 315  Q
    ||||| ||  | ||||| ||||| ||||| ||||||||||||||||| |||||||| ||||||||| | || ||||||  || ||||||||   ||||||    
T  979570 gctaataagcccaattttatgtacggtacacaaagatggtggtcggatcctttattatgtttgggtatcgaccgaccaccgcattgactcttcattgtat 979669  T
Q  316 g-tttgactcatattaggggtgacacttttagtacatcttgtacttaggtg-ttcactgccgttgttaatatattccatttttatgtcttc 404  Q
    | |||||||  |  |||||||| ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||    
T  979670 gttttgactatttctaggggtggcacttttagtacatcttgtacttagatgtttcactgccattgttaatatattccatttttatgtcttc 979760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 251 - 403
Target Start/End: Complemental strand, 35101128 - 35100975
Alignment:
Q  251 atggtggtcggaccctttattttgtttgggtttagatcgaccattgctttgactctaatttgtatgtttgactcatattaggggtgacacttttagtaca 350  Q
    ||||||||||||||||||||| ||| || || |  ||||||| |||||||||||||| ||||||||||| |||  |||||||| || |||||||||||||    
T  35101128 atggtggtcggaccctttattatgtctgagtatcaatcgacctttgctttgactctactttgtatgtttaactgttattagggatggcacttttagtaca 35101029  T
Q  351 tcttgtacttaggtg-ttcactgccgttgttaatatattccatttttatgtctt 403  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  35101028 tcttgtacttaggtgtttcaccgccgttgttaatatattccatttttatgtctt 35100975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 281
Target Start/End: Complemental strand, 379693 - 379505
Alignment:
Q  93 atttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgat 192  Q
    |||||||||||| |||| ||| |||| ||||| |  ||||| |||||| | |||||||||| ||||||||| |  || |||||   ||| ||||||  ||    
T  379693 atttggttacttggtgtctggatggtctggaatgctcgtaacaatagaatatttaataatacccaaaccaccgtagaccaacttttagagaaagttaaat 379594  T
Q  193 ttcattctttatggtggcttcaagctaacaaagcaaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggt 281  Q
    ||||||| |||||||||||| | ||||| || || |||||  |||| | ||| || || ||||||||||||||||| | ||||||||||    
T  379593 ttcattcgttatggtggcttaaggctaagaacgctaattttgtgtacgatactcagagttggtggtcggaccctttgtattgtttgggt 379505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 475993 - 475926
Alignment:
Q  93 atttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaac 160  Q
    ||||||||||||||||| ||| |||||||||| ||||| || || |||||||||||||||| ||||||    
T  475993 atttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaac 475926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 345 - 403
Target Start/End: Original strand, 34373235 - 34373293
Alignment:
Q  345 agtacatcttgtacttaggtgttcactgccgttgttaatatattccatttttatgtctt 403  Q
    ||||||||||||||| ||||| |||| ||| ||||||||||||| ||||||||||||||    
T  34373235 agtacatcttgtactaaggtggtcaccgcctttgttaatatatttcatttttatgtctt 34373293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 404
Target Start/End: Original strand, 18718556 - 18718631
Alignment:
Q  329 taggggtgacacttttagtacatcttgtacttaggtg-ttcactgccgttgttaatatattccatttttatgtcttc 404  Q
    ||||| ||||||||| ||||||||||||||||||| | |||||| | | ||||||| ||||||||||||||||||||    
T  18718556 tagggttgacacttt-agtacatcttgtacttaggcggttcactactgatgttaatttattccatttttatgtcttc 18718631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 14055141 - 14055187
Alignment:
Q  235 tgtatggtacccaaagatggtggtcggaccctttattttgtttgggt 281  Q
    |||||||| | |||||||||||| |||||||||||||||||||||||    
T  14055141 tgtatggttctcaaagatggtggccggaccctttattttgtttgggt 14055187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 41612470 - 41612413
Alignment:
Q  103 tttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaac 160  Q
    ||||||| ||||| |||||||| |||||||| |||||| | |||||||||||||||||    
T  41612470 tttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaataatatccaaac 41612413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 403
Target Start/End: Complemental strand, 16906809 - 16906777
Alignment:
Q  371 tgccgttgttaatatattccatttttatgtctt 403  Q
    |||||||||||||||||||||||||||||||||    
T  16906809 tgccgttgttaatatattccatttttatgtctt 16906777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 17431289 - 17431225
Alignment:
Q  96 tggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaac 160  Q
    |||||||||||||| ||| | |||||||| |||||||| |||||| | |||||||||||| ||||    
T  17431289 tggttactttgtgtctggttagtttggaatgaacgtaacaatagaatatttaataatatcaaaac 17431225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 16907077 - 16906995
Alignment:
Q  81 tttcttcaacttatttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaaccac 163  Q
    |||||||| || || |||||||||||||| ||  |||| ||||| ||||||||||| | | | |||| |||||||||||||||    
T  16907077 tttcttcagctcatatggttactttgtgtctgaatggtatggaatgaacgtaataacaaaatatttagtaatatccaaaccac 16906995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 3 - 404
Target Start/End: Original strand, 144294 - 144695
Alignment:
Q  3 ggtgctgacccttttaatattgctgaccatttcattcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttac 102  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||    
T  144294 ggtgctgacccttttactattaatgaccatttcattcagtttactcactctacaagtcactcaaaggctcgtcagtcatttcttcaacttatttggttac 144393  T
Q  103 tttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgatttcattcttt 202  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||  | |||||||||||||||||||| ||||||||    
T  144394 tttgtgtttgggtggtttggaacgaacgtaataataggctttttaataatatccaaaccacagttgacaatctagcagataaagttcgattccattcttt 144493  T
Q  203 atggtggcttcaagctaacaaagcaaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccattgctttga 302  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  144494 atggtggcttcaagctaacaacgcaaatttcatgtatggtacccaacgatggtggtcggaccctttattttgtttgggtttagatcgaccattgttttga 144593  T
Q  303 ctctaatttgtatgtttgactcatattaggggtgacacttttagtacatcttgtacttaggtgttcactgccgttgttaatatattccatttttatgtct 402  Q
    ||||| |||||||||||||||  | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  144594 ctctattttgtatgtttgactgtttttaggggtgacacttttagtacatcttgtacttagatgttcactgccgttgttaatatattccatttttatgtct 144693  T
Q  403 tc 404  Q
    ||    
T  144694 tc 144695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 404
Target Start/End: Complemental strand, 32624212 - 32623828
Alignment:
Q  20 tattgctgaccatttcattcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttactttgtgtttgggtggtt 119  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32624212 tattgatgaccatttcattcagtttactcactctacaggtcactcaaaggctcgtcagtcatttcttcaacttatttggttactttgtgtttgggtggtt 32624113  T
Q  120 tggaacgaacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgatttcattctttatggtggcttcaagcta 219  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  32624112 tggaacgaacgtaataatagactttttaataatatccaaaccacggttgaacaactagcagataaagttcaatttcattctttatagtggcttcaagcta 32624013  T
Q  220 acaaagcaaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccattgctttgactctaatttgtatgttt 319  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  32624012 acaaagcaaattttatgtatggtacccaaa-atggtggtcggaccctttattttgtttgggtttagatcgacctttgctttgactctactttgtatgttt 32623914  T
Q  320 gactcatattaggggtgacacttttagtacatcttgtacttaggtg-ttcactgccgttgttaatatattccatttttatgtcttc 404  Q
    ||||  ||| ||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  32623913 gactgttatcaggggtggcacttttagtacatcttgtacttaggtgttttactgccgttgttaatatattccatttttatgtcttc 32623828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 403
Target Start/End: Complemental strand, 11196208 - 11195820
Alignment:
Q  16 ttaatattgctgaccatttcattcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttactttgtgtttgggt 115  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| | | |||||| ||||||||||||||||||| | ||||| |    
T  11196208 ttaatattgatgaccatttcattcagtttactcactctacaggtcactcaaaggctcgtcaataatttctccaacttatttggttactttttatttggtt 11196109  T
Q  116 ggtttggaacgaacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgatttcattctttatggtggcttcaa 215  Q
    ||||||||| |||||||||||||  |||| |||||| ||||||||||| | |||||||||||||||||||||   |||||| ||||||||||||||| ||    
T  11196108 ggtttggaatgaacgtaataatatgctttataataacatccaaaccaccgttgaacaactagcagataaagtaaaatttcactctttatggtggcttaaa 11196009  T
Q  216 gctaacaaagcaaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccattgctttgactctaatttgtat 315  Q
    ||||||||||  ||||| ||||  ||||| |||||||||||||||||||||||||| ||| || || | ||| |||| ||||||||||| || |||| ||    
T  11196008 gctaacaaagtcaattttatgttcggtactcaaagatggtggtcggaccctttattatgtctgagtatcgattgacctttgctttgactttactttgcat 11195909  T
Q  316 gtttgactcatattaggggtgacacttttagtacatcttgtacttaggtg-ttcactgccgttgttaatatattccatttttatgtctt 403  Q
    || |||||  ||||||||||||||||||||||||||||| |||||||||| ||| || |||||||||||||||||||||||||||||||    
T  11195908 gtctgactattattaggggtgacacttttagtacatcttatacttaggtgtttccctaccgttgttaatatattccatttttatgtctt 11195820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 12562801 - 12562732
Alignment:
Q  94 tttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaaccac 163  Q
    ||||||||||||||||||||||||||||||| || ||||||||   | | ||||||||||||||||||||    
T  12562801 tttggttactttgtgtttgggtggtttggaaagagcgtaataactaaatatttaataatatccaaaccac 12562732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 40110127 - 40110063
Alignment:
Q  96 tggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaac 160  Q
    |||||||||||||| ||||| |||||||| |||||||| |||||| | |||||||||||||||||    
T  40110127 tggttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaataatatccaaac 40110063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 11579891 - 11579970
Alignment:
Q  84 cttcaacttatttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaaccac 163  Q
    ||||| ||| |||| ||||||||||| |||||||||| ||| ||||||||| ||||| | |||||||| |||||||||||    
T  11579891 cttcagcttgtttgtttactttgtgtctgggtggtttagaatgaacgtaatgatagaatatttaataacatccaaaccac 11579970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 17689778 - 17689711
Alignment:
Q  93 atttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaac 160  Q
    ||||||||||||||||| ||| |||||||||| ||||| || || |||||||||||||||| ||||||    
T  17689778 atttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaac 17689711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 404
Target Start/End: Complemental strand, 18634469 - 18634432
Alignment:
Q  367 tcactgccgttgttaatatattccatttttatgtcttc 404  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18634469 tcactgccgttgttaatatattccatttttatgtcttc 18634432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 18634760 - 18634675
Alignment:
Q  78 tcatttcttcaacttatttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaaccac 163  Q
    ||||||||||| || |||| |||||||||| | ||  |||||||||| ||||||||||| | | | |||||||| |||||||||||    
T  18634760 tcatttcttcagctcatttcgttactttgtttctgtatggtttggaatgaacgtaataacaaaatatttaataacatccaaaccac 18634675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 404
Target Start/End: Complemental strand, 18739807 - 18739759
Alignment:
Q  357 acttaggtg-ttcactgccgttgttaatatattccatttttatgtcttc 404  Q
    ||||||||| |||||| ||||||||||||||||| ||||||||||||||    
T  18739807 acttaggtggttcactaccgttgttaatatattctatttttatgtcttc 18739759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 19469250 - 19469314
Alignment:
Q  96 tggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaac 160  Q
    |||||||| ||||| ||||| |||||||| ||||| || |||||| | |||||||||||||||||    
T  19469250 tggttactctgtgtctgggtagtttggaatgaacgcaacaatagaatatttaataatatccaaac 19469314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 281
Target Start/End: Complemental strand, 31265852 - 31265817
Alignment:
Q  246 caaagatggtggtcggaccctttattttgtttgggt 281  Q
    |||||||||||||||||||||||| |||||||||||    
T  31265852 caaagatggtggtcggaccctttactttgtttgggt 31265817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 403
Target Start/End: Complemental strand, 7300182 - 7300149
Alignment:
Q  370 ctgccgttgttaatatattccatttttatgtctt 403  Q
    ||||||||||||||||||||||||| ||||||||    
T  7300182 ctgccgttgttaatatattccatttgtatgtctt 7300149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 9005628 - 9005576
Alignment:
Q  81 tttcttcaacttatttggttactttgtgtttgggtggtttggaacgaacgtaa 133  Q
    |||||||| || || ||||||||||||| ||||||||||||||| || |||||    
T  9005628 tttcttcagctcatctggttactttgtgcttgggtggtttggaatgatcgtaa 9005576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 3 - 404
Target Start/End: Complemental strand, 20543955 - 20543553
Alignment:
Q  3 ggtgctgacccttttaatattgctgaccatttcattcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttac 102  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||    
T  20543955 ggtgctgacccctttaatattgatgaccatttcattcagtttactcactctacaggtcactcaaaggctcgtcagccatttcttcaacttatttggttac 20543856  T
Q  103 tttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgatttcattcttt 202  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||    
T  20543855 tttgtgtttgggtggtttggaatgaacgtaataatagactttttaataatatccaaaccacggttgaacaactagcagataaagttagatttcattcttt 20543756  T
Q  203 atggtggcttcaagctaacaaagcaaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccattgctttga 302  Q
    |||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||    
T  20543755 atggtggcttaaagctaacaaagccaattttatgtatggtacccaaagatggtggtcggaccctttattatgtctgggtttagatcgacctttgctttga 20543656  T
Q  303 ctctaatttgtatgtttgactcatattaggggtgacacttttagtacatcttgtacttaggtg-ttcactgccgttgttaatatattccatttttatgtc 401  Q
    ||||| |||||||||||||||  ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  20543655 ctctactttgtatgtttgactgttattaggggtggcacttttagtacatcttgtacttaggtgtttcactgccgttgttaatatattccatttttatgtc 20543556  T
Q  402 ttc 404  Q
    |||    
T  20543555 ttc 20543553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 3 - 404
Target Start/End: Original strand, 43517000 - 43517402
Alignment:
Q  3 ggtgctgacccttttaatattgctgaccatttcattcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttac 102  Q
    |||||||| ||  ||||||||| ||||||||||||| |||| ||||| |||||||| ||||||| ||||||| | || || |||||||||||||||||||    
T  43517000 ggtgctgatccccttaatattgatgaccatttcatttagttcactcattctacaggtcactcaagggctcgtcaatccttccttcaacttatttggttac 43517099  T
Q  103 tttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgatttcattcttt 202  Q
    ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||    ||||  |||| ||| ||||||  || ||| |||||    
T  43517100 tttgtgtttggttggtttggaatgaacgtaataatagactttataataatatccaaacaaccatggaacggctagtagaaaaagttaaatatcactcttt 43517199  T
Q  203 atggtggcttcaagctaacaaagcaaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccattgctttga 302  Q
     ||||||||  | ||||| || || ||||| ||||| ||||| ||||||||||||||  |||||||||| ||||||||| |  | ||||||| || ||||    
T  43517200 gtggtggctaaaggctaataaggccaatttgatgtacggtacacaaagatggtggtcataccctttattatgtttgggtatcaaccgaccatcgcattga 43517299  T
Q  303 ctctaatttgtatgtttgactcatattaggggtgacacttttagtacatcttgtacttaggtg-ttcactgccgttgttaatatattccatttttatgtc 401  Q
    ||||   ||||||||||||||  |  ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  43517300 ctcttcattgtatgtttgactatttctaggggtgacacttttagtacatcttgtacttaggtgtttcactgctgttgttaatatattccatttttatgtc 43517399  T
Q  402 ttc 404  Q
    |||    
T  43517400 ttc 43517402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 27 - 403
Target Start/End: Complemental strand, 27300011 - 27299634
Alignment:
Q  27 gaccatttcattcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttactttgtgtttgggtggtttggaacg 126  Q
    |||||||||||||| ||||||||||||||||| |||| |||||||||| | || || ||||||||||||||||| |||||||| ||| ||||||||||||    
T  27300011 gaccatttcattcaatttactcactctacaggtcacttaaaggctcgtcaatccttccttcaacttatttggtt-ctttgtgtctggttggtttggaacg 27299913  T
Q  127 aacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgatttcattctttatggtggcttcaagctaacaaagc 226  Q
    || |||| || | | ||  ||| ||||||||||||||   |||||| |  ||||| |||||    ||||| ||||| ||||||||| ||||||| ||  |    
T  27299912 aatgtaacaacatatttcataacaatatccaaaccaccattgaacagccggcagaaaaagtaaagtttcactctttttggtggcttaaagctaataagac 27299813  T
Q  227 aaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccattgctt-tgact-ctaatttgtatgtttgactc 324  Q
     | |||  || | ||||| || |||||||||| |||||||||||| ||||||||| |  |  |||  || ||| ||  | ||   |||||||  |||||     
T  27299812 cacttttgtgcacggtactcacagatggtggttggaccctttattatgtttgggtatcaactgacatttacttctgtttccttcattgtatgactgact- 27299714  T
Q  325 atattaggggtgacacttttagtacatcttgtacttaggtg-ttcactgccgttgttaatatattccatttttatgtctt 403  Q
     | ||||||||| || |||||||||||||||||||||| ||  |||||| ||| ||||||||||||||||||||||||||    
T  27299713 gttttaggggtggcagttttagtacatcttgtacttagatgactcactgtcgtagttaatatattccatttttatgtctt 27299634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 220
Target Start/End: Complemental strand, 19119856 - 19119730
Alignment:
Q  94 tttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgatt 193  Q
    |||||||||||||||| ||| |||||||||| ||||||||||| | | | ||||||||||||||| ||||    ||||||||   | | ||||||  |||    
T  19119856 tttggttactttgtgtctggatggtttggaatgaacgtaataacaaaatatttaataatatccaagccaccatagaacaactcttataaaaagttaaatt 19119757  T
Q  194 tcattctttatggtggcttcaagctaa 220  Q
    |||||| |||||||||||| |||||||    
T  19119756 tcattcgttatggtggcttaaagctaa 19119730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 345 - 403
Target Start/End: Complemental strand, 3098558 - 3098500
Alignment:
Q  345 agtacatcttgtacttaggtgttcactgccgttgttaatatattccatttttatgtctt 403  Q
    ||||||||||||| ||||||| |||| ||| ||||||||||||| ||||||||||||||    
T  3098558 agtacatcttgtatttaggtggtcaccgcctttgttaatatatttcatttttatgtctt 3098500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 9690060 - 9690014
Alignment:
Q  235 tgtatggtacccaaagatggtggtcggaccctttattttgtttgggt 281  Q
    |||||||| | ||||||||||||||| |||||||| |||||||||||    
T  9690060 tgtatggttctcaaagatggtggtcgaaccctttactttgtttgggt 9690014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 21393766 - 21393816
Alignment:
Q  102 ctttgtgtttgggtggtttggaacgaacgtaataatagactttttaataat 152  Q
    |||||||||||| | || ||||| ||||||||||||||||| |||||||||    
T  21393766 ctttgtgtttggctagtgtggaatgaacgtaataatagactatttaataat 21393816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 396
Target Start/End: Original strand, 56338134 - 56338164
Alignment:
Q  366 ttcactgccgttgttaatatattccattttt 396  Q
    |||||||||||||||||||||||||||||||    
T  56338134 ttcactgccgttgttaatatattccattttt 56338164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 53569633 - 53569601
Alignment:
Q  249 agatggtggtcggaccctttattttgtttgggt 281  Q
    ||||||||||||||||||||| |||||||||||    
T  53569633 agatggtggtcggaccctttactttgtttgggt 53569601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 3 - 404
Target Start/End: Original strand, 14687278 - 14687678
Alignment:
Q  3 ggtgctgacccttttaatattgctgaccatttcattcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttac 102  Q
    |||||||||||||||| |||||  | ||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  14687278 ggtgctgacccttttactattgaggcccatttcattcagtttattcactctacaggtcactcaaaggctcgtcagtcatttcttcaacttatttggttac 14687377  T
Q  103 tttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgatttcattcttt 202  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||  | |||||||||||||||||||||||||||||    
T  14687378 tttgtgttttggtggtttggaacgaacgtaataataggctttttaataatatccaaaccacagttgacaatctagcagataaagttcgatttcattcttt 14687477  T
Q  203 atggtggcttcaagctaacaaagcaaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccattgctttga 302  Q
    |||||||||||||||||| || || ||||||||||| ||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14687478 atggtggcttcaagctaataacgccaatttcatgta-ggtacccaacgatagtggtcggaccctttattttgtttgggtctagatcgaccattgctttga 14687576  T
Q  303 ctctaatttgtatgtttgactcatattaggggtgacacttttagtacatcttgtacttaggtgttcactgccgttgttaatatattccatttttatgtct 402  Q
    ||||  |||||||||||||||  | ||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  14687577 ctcttttttgtatgtttgactgtttttaggggtgacacctttagtacatcttgtacttaggcattcactgccgttgttaatatattccatttttatgtct 14687676  T
Q  403 tc 404  Q
    ||    
T  14687677 tc 14687678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 126 - 404
Target Start/End: Original strand, 14320514 - 14320793
Alignment:
Q  126 gaacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgatttcattctttatggtggcttcaagctaacaaag 225  Q
    ||||||||||||||||| | ||||||||||||||||||    |||||||||| ||| ||||||  || ||| ||||| ||||||||  | ||||| || |    
T  14320514 gaacgtaataatagactctataataatatccaaaccaccatggaacaactagtagaaaaagttaaatatcactctttgtggtggctaaaggctaagaagg 14320613  T
Q  226 caaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccattgctttgactctaatttgtatgtttgactca 325  Q
    | || || ||||| ||| | |||||| ||||||||||||||||||| ||||||||| |  | |||| |   | ||||||||   ||||||| ||||||      
T  14320614 ccaactttatgtacggttcacaaagacggtggtcggaccctttattatgtttgggtatcaaccgactagcacattgactcttcattgtatggttgactat 14320713  T
Q  326 tattaggggtgacacttttagtacatcttgtacttaggtgtt-cactgccgttgttaatatattccatttttatgtcttc 404  Q
    |  ||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  14320714 ttctagggatggcacttttagtacatcttgtacttaggtgtttcactgccgttgttaatatatcccatttttatgtcttc 14320793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 2710071 - 2710117
Alignment:
Q  90 cttatttggttactttgtgtttgggtggtttggaacgaacgtaataa 136  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  2710071 cttatttggttactttgtgtttgggtggtttggaatgaacgtaataa 2710117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 404
Target Start/End: Original strand, 2710324 - 2710383
Alignment:
Q  345 agtacatcttgtacttaggtgttcactgccgttgttaatatattccatttttatgtcttc 404  Q
    ||||||||||||||||||||| |||| | | ||||||||||||| |||||||||||||||    
T  2710324 agtacatcttgtacttaggtggtcaccgtctttgttaatatatttcatttttatgtcttc 2710383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 22532297 - 22532230
Alignment:
Q  93 atttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaac 160  Q
    ||||||||||||||||| ||| |||||||||| ||||| || || |||||||||||||||| ||||||    
T  22532297 atttggttactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatacccaaac 22532230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 25350000 - 25349936
Alignment:
Q  96 tggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaac 160  Q
    |||||||||||||| ||||| ||||||||  ||||||| |||||| | |||||||||||||||||    
T  25350000 tggttactttgtgtctgggtagtttggaataaacgtaacaatagaatatttaataatatccaaac 25349936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 2364885 - 2364818
Alignment:
Q  93 atttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaac 160  Q
    ||||||||||||||||| ||| ||||||| || ||||| || || |||||||||||||||| ||||||    
T  2364885 atttggttactttgtgtgtggatggtttgaaatgaacgcaacaacagactttttaataatacccaaac 2364818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 26513501 - 26513434
Alignment:
Q  96 tggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaaccac 163  Q
    |||||||||||||| |||||||||||||| || || || || | | |||||||||||| |||||||||    
T  26513501 tggttactttgtgtctgggtggtttggaatgaccgcaacaacataatttttaataataaccaaaccac 26513434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 396
Target Start/End: Complemental strand, 22532049 - 22531994
Alignment:
Q  343 ttagtacatcttgtacttaggtg--ttcactgccgttgttaatatattccattttt 396  Q
    ||||||||||||||||||||| |  ||||| ||| |||||||||||| ||||||||    
T  22532049 ttagtacatcttgtacttaggaggtttcaccgcctttgttaatatataccattttt 22531994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 3 - 403
Target Start/End: Complemental strand, 33150865 - 33150463
Alignment:
Q  3 ggtgctgacccttttaatattgctgaccatttcattcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttac 102  Q
    ||||| |||||  ||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||| | |||||||| ||||||||||||||||    
T  33150865 ggtgccgacccccttaatattgatgaccatttcattcagtttactcactctacaggtcactcaaaagctcgtcaatcatttctccaacttatttggttac 33150766  T
Q  103 tttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgatttcattcttt 202  Q
    ||||||||||| |||||||||| ||||||||||||||||| | |||||| ||||||||||| | |||||||||||||||||||||  ||||||| |||||    
T  33150765 tttgtgtttggttggtttggaatgaacgtaataatagactctataataacatccaaaccaccgttgaacaactagcagataaagtaagatttcactcttt 33150666  T
Q  203 atggtggcttcaagctaacaaagcaaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgacca-ttgctttg 301  Q
    |||||||||| ||||||||||||  ||||| ||||| ||||| ||||||||||||||||| |||||||| ||| ||||| | ||||||| | ||| ||||    
T  33150665 atggtggcttaaagctaacaaagtcaattttatgtacggtactcaaagatggtggtcggaacctttattatgtctgggtatcgatcgacaatttgttttg 33150566  T
Q  302 actctaatttgtatgtttgactcatattaggggtgacacttttagtacatcttgtacttaggtg-ttcactgccgttgttaatatattccatttttatgt 400  Q
    |||||| |||||||||||||||  ||||||||||| |||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33150565 actctactttgtatgtttgactgttattaggggtggcacttttactacattttgtacttaggtgtttcactgccgttgttaatatattccatttttatgt 33150466  T
Q  401 ctt 403  Q
    |||    
T  33150465 ctt 33150463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 126 - 404
Target Start/End: Complemental strand, 52028431 - 52028152
Alignment:
Q  126 gaacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgatttcattctttatggtggcttcaagctaacaaag 225  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52028431 gaacgtaataatagactttttaataatatccaaaccacagttgaactactagcagataaagttcgatttcattctttatggtggcttcaagctaacaaag 52028332  T
Q  226 caaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccattgctttgactctaatttgtatgtttgactca 325  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||      
T  52028331 caaatttcatgtatggtactcaaagatggtggtcggaccctttattttgtttgggtttagatcgacctttgctttgactctaatttgtatgtttgactgt 52028232  T
Q  326 tattaggggtgacacttttagtacatcttgtacttaggtg-ttcactgccgttgttaatatattccatttttatgtcttc 404  Q
    ||||||||||| |||||||| |||||||| |||||||||| |||||||| || |||||||||||||||||||||||||||    
T  52028231 tattaggggtggcacttttaatacatcttatacttaggtgtttcactgctgtcgttaatatattccatttttatgtcttc 52028152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 3 - 404
Target Start/End: Original strand, 13868085 - 13868487
Alignment:
Q  3 ggtgctgacccttttaatattgctgaccatttcattcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttac 102  Q
    |||||||| ||  ||||||||| |||||||||||||||||| ||||| |||||||| |||||   ||| ||| | || || || ||||||||||||||||    
T  13868085 ggtgctgatccccttaatattgatgaccatttcattcagttcactcattctacaggtcactcccgggcccgtcaatccttcctacaacttatttggttac 13868184  T
Q  103 tttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgatttcattcttt 202  Q
    | ||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||    |||||||||| | | ||||||  || ||| |||||    
T  13868185 tatgtgtttggttggtttggaatgaacgtaataatagactttataataatatccaaacaaccatggaacaactagtaaaaaaagttaaatatcactcttt 13868284  T
Q  203 atggtggcttcaagctaacaaagcaaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccattgctttga 302  Q
     ||||||||  ||||||| || || ||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||| |  | |||||||  | ||||    
T  13868285 gtggtggctaaaagctaataaggccaattttatgtacggtacacaaagatggtggtcggaccctttattatgtttgggtatcaaccgaccatcacattga 13868384  T
Q  303 ctctaatttgtatgtttgactcatattaggggtgacacttttagtacatcttgtacttaggtg-ttcactgccgttgttaatatattccatttttatgtc 401  Q
    ||||   ||||||| ||||||  |  ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||    
T  13868385 ctcttcattgtatggttgactatttctaggggtgacacttttaatacatcttgtacttaggtgtttcactgccgttgttaatatatctcatttttatgtc 13868484  T
Q  402 ttc 404  Q
    |||    
T  13868485 ttc 13868487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 87 - 404
Target Start/End: Complemental strand, 45795217 - 45794899
Alignment:
Q  87 caacttatttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaag 186  Q
    ||||||||||||||||| ||||||||| |||||||||| | ||||||||||||||||| |||||||||| |||| ||    ||| | |||| ||| ||||    
T  45795217 caacttatttggttactatgtgtttggttggtttggaatgtacgtaataatagactttataataatatcaaaacaaccatggaagagctagtagaaaaag 45795118  T
Q  187 ttcgatttcattctttatggtggcttcaagctaacaaagcaaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttaga 286  Q
    ||  || ||| ||||| ||||||||  | | ||| || || ||||| ||||| ||||| |||| ||||||||||||||||||||| ||||||||| |  |    
T  45795117 ttaaatatcactctttgtggtggctaaaggttaataaggccaattttatgtacggtacacaaaaatggtggtcggaccctttattatgtttgggtatcaa 45795018  T
Q  287 tcgaccattgctttgactctaatttgtatgtttgactcatattaggggtgacacttttagtacatcttgtacttaggtg-ttcactgccgttgttaatat 385  Q
     |||||||  | ||||||||   || |||||||||||  |  ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45795017 ccgaccatcacattgactcttcattatatgtttgactatttctaggggtgatacttttagtacatcttgtacttaggtgtttcactgccgttgttaatat 45794918  T
Q  386 attccatttttatgtcttc 404  Q
    || |||||||||| |||||    
T  45794917 atcccatttttatatcttc 45794899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 27 - 404
Target Start/End: Complemental strand, 5808602 - 5808229
Alignment:
Q  27 gaccatttcattcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttactttgtgtttgggtggtttggaacg 126  Q
    |||||||||||||||||||||||||| ||| | ||||||||||||||| | || || |||||||||||||||||||||||||| ||| ||||||||||||    
T  5808602 gaccatttcattcagtttactcactcgacatgtcactcaaaggctcgtcaatccttccttcaacttatttggttactttgtgtctggttggtttggaacg 5808503  T
Q  127 aacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgatttcattctttatggtggcttcaagctaacaaagc 226  Q
    ||||||| || | | ||  ||| ||||||||||||||    ||||| |||||||| |||||    ||||| ||||| | ||||||| ||||||| || |     
T  5808502 aacgtaacaacaaatttcataacaatatccaaaccaccatcgaacagctagcagaaaaagtaaagtttcactctttttagtggcttaaagctaataaggt 5808403  T
Q  227 aaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccattgctt-tgact-ctaatttgtatgtttgactc 324  Q
     | |||  || | ||||| ||      | ||||| |||||||||| ||||||||| | ||| | || |||||| ||  | ||   |||||||  |||||     
T  5808402 cacttttgtgcacggtacaca------gaggtcgaaccctttattatgtttgggtatcgattgtcctttgcttctgtttccttcattgtatgactgact- 5808310  T
Q  325 atattaggggtgacacttttagtacatcttgtacttaggtg-ttcactgccgttgttaatatattccatttttatgtcttc 404  Q
     | ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  5808309 gttttaggggtgacacttttagtacatcttgtacttaggtgactcactgccgttgttaatatattccatttttatgtcttc 5808229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 3 - 404
Target Start/End: Original strand, 26510627 - 26511037
Alignment:
Q  3 ggtgctgacccttttaatattgctgaccatttcattcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttac 102  Q
    |||| |||||| |||||||| | ||||||||||||||||||||||||||||||||| ||||| ||||||||| | |   ||||||||||||| |||||||    
T  26510627 ggtgttgacccctttaatatcgatgaccatttcattcagtttactcactctacaggtcactcgaaggctcgtcaat-tcttcttcaacttatatggttac 26510725  T
Q  103 tttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgatttcattcttt 202  Q
    ||||||  ||| | || ||||| |||||||| || ||||||  |||||||||||||||||    ||||||||||| ||| |||||   |||||| || ||    
T  26510726 tttgtgcctggtttgtgtggaatgaacgtaacaacagacttcataataatatccaaaccaacattgaacaactagtagaaaaagtaaaatttcactcctt 26510825  T
Q  203 atggtggcttcaagctaacaaagcaaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccattg-ctttg 301  Q
     |||| |||| ||||||| || || | ||| ||||| ||| | |||||||  |||||||||| |||||| ||||||||| | |||  ||| ||| |||||    
T  26510826 ttggtagcttaaagctaataaggccacttttatgtacggttctcaaagat--tggtcggaccatttattatgtttgggtatcgattcacctttgtctttg 26510923  T
Q  302 act-ctaat----------ttgtatgtttgactcatattaggggtgacacttttagtacatcttgtacttaggt-gttcactgccgttgttaatatattc 389  Q
     || || ||          |||||||  |||||  | | |||| |||||| ||||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  26510924 tctcctcattgtatgatcattgtatgactgactgttttcagggatgacac-tttagtacatcttgtacttaggtggttcactaccgttattaatatattc 26511022  T
Q  390 catttttatgtcttc 404  Q
    |||||||||||||||    
T  26511023 catttttatgtcttc 26511037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 296 - 403
Target Start/End: Complemental strand, 34352601 - 34352493
Alignment:
Q  296 gctttgactctaatttgtatgtttgactcatattaggggtgacacttttagtacatcttgtacttaggtg-ttcactgccgttgttaatatattccattt 394  Q
    |||||||||||   |||||||| |||||  | |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  34352601 gctttgactcttcattgtatgtctgactgtttttaggggtgacacttttagtacatcttgtacttaggtgtttcactgccgttgttgatatattccattt 34352502  T
Q  395 ttatgtctt 403  Q
    |||||||||    
T  34352501 ttatgtctt 34352493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 1248884 - 1249014
Alignment:
Q  31 atttcattcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttactttgtgtttgggtggtttggaacgaacg 130  Q
    |||| |||||||||| ||||| |||||| ||||| |||||  ||   || ||||||||||||||||||||||||||||| ||| || ||||||| |||||    
T  1248884 attttattcagtttattcactatacaggtcactcgaaggcgtgtcgatcctttcttcaacttatttggttactttgtgtgtggatgatttggaatgaacg 1248983  T
Q  131 taataatagactttttaataatatccaaacc 161  Q
     || || | || ||||||||| |||||||||    
T  1248984 caacaacaaacattttaataacatccaaacc 1249014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 49458522 - 49458443
Alignment:
Q  81 tttcttcaacttatttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaac 160  Q
    |||||||||||||||||||| |||||||| ||| ||||||| || ||||| || ||  ||||||||||||||||||||||    
T  49458522 tttcttcaacttatttggttgctttgtgtgtggatggtttgaaatgaacgcaacaaatgactttttaataatatccaaac 49458443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 34824838 - 34824905
Alignment:
Q  93 atttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaac 160  Q
    ||||||||||| ||||| ||| |||||||||| ||||| || || ||||||||||||||||| |||||    
T  34824838 atttggttactatgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatattcaaac 34824905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 52691310 - 52691249
Alignment:
Q  99 ttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaac 160  Q
    ||||||||||| ||||| |||||||| |||||||| |||||| | ||||||||||| |||||    
T  52691310 ttactttgtgtctgggtagtttggaatgaacgtaacaatagaatatttaataatattcaaac 52691249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 152
Target Start/End: Complemental strand, 49969119 - 49969048
Alignment:
Q  81 tttcttcaacttatttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataat 152  Q
    |||||||| ||||||||| |  | |||||||| ||  | ||||||||||||||||| |||||||||||||||    
T  49969119 tttcttcagcttatttggctcttgtgtgtttgagttttatggaacgaacgtaataacagactttttaataat 49969048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 36928953 - 36928888
Alignment:
Q  87 caacttatttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataat 152  Q
    |||||||||||| ||||||||| |||||| || ||||| ||||| |||||| | || |||||||||    
T  36928953 caacttatttggctactttgtgcttgggttgtgtggaatgaacgaaataatcgtctgtttaataat 36928888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 6e-72; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 16 - 404
Target Start/End: Original strand, 40513989 - 40514378
Alignment:
Q  16 ttaatattgctgaccatttcattcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttactttgtgtttgggt 115  Q
    ||||||||| ||| ||||||||||||||  |||| |||| ||| ||||||  ||| ||| | || ||||| ||||||||||||||||| ||||||||| |    
T  40513989 ttaatattgatgaacatttcattcagttcgctcattctataggtcactcacgggcccgtcaatcctttctacaacttatttggttactatgtgtttggtt 40514088  T
Q  116 ggtttggaacgaacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgatttcattctttatggtggcttcaa 215  Q
    ||||||||| ||||||||||||||||| | ||||||||||||||||||    |||||||||| ||| ||||||  || ||| ||||| ||||||||  |     
T  40514089 ggtttggaatgaacgtaataatagactctataataatatccaaaccaccatggaacaactagtagaaaaagttaaatatcactctttgtggtggctaaag 40514188  T
Q  216 gctaacaaagcaaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccattgctttgactctaatttgtat 315  Q
    ||||| || || || || ||||| ||| | |||| ||||||||||||||||||||| ||||||||| |  | ||||||   | ||||||||   ||||||    
T  40514189 gctaataaggccaactttatgtacggttcacaaaaatggtggtcggaccctttattatgtttgggtatcaaccgaccagcacattgactcttcattgtat 40514288  T
Q  316 gtttgactcatattaggggtgacacttttagtacatcttgtacttaggtg-ttcactgccgttgttaatatattccatttttatgtcttc 404  Q
    | ||||||  |  |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  40514289 ggttgactatttctaggggtggcacttttagtacatcttgtacttaggtgtttcactgccgttgttaatatatcccatttttatgtcttc 40514378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 87 - 403
Target Start/End: Complemental strand, 20857742 - 20857428
Alignment:
Q  87 caacttatttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaag 186  Q
    ||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||| ||||||||||||||| ||    |||||||||| ||| ||||    
T  20857742 caacttatttggttactatgtgtctggttggtttggaatgaacgtaataatagactttataataatatccaaacaaccatggaacaactagtagaaaaag 20857643  T
Q  187 ttcgatttcattctttatggtggcttcaagctaacaaagcaaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttaga 286  Q
    ||  ||  || ||||| ||||||||  | ||||| || || ||||| ||||| ||||| |||||||||||||||||||||||||| | ||||||| |  |    
T  20857642 ttaaataccactctttgtggtggctcaaggctaataaggccaattttatgtacggtacacaaagatggtggtcggaccctttattatatttgggtatcaa 20857543  T
Q  287 tcgaccattgctttgactctaatttgtatgtttgactcatattaggggtgacacttttagtacatcttgtacttaggtg-ttcactgccgttgttaatat 385  Q
     |||||||  | ||| ||||   ||||||||||||||  |  ||||||||||||||||||||||||||||||||||||| ||||||||   |||||||||    
T  20857542 ccgaccatcacattgcctcttcattgtatgtttgactatttctaggggtgacacttttagtacatcttgtacttaggtgtttcactgc---tgttaatat 20857446  T
Q  386 attccatttttatgtctt 403  Q
    || |||||||||||||||    
T  20857445 atcccatttttatgtctt 20857428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 10 - 300
Target Start/End: Complemental strand, 34829282 - 34828992
Alignment:
Q  10 acccttttaatattgctgaccatttcattcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttactttgtgt 109  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| | || |||||||||||||| | |||||||||||     
T  34829282 acccctttaatattgatgaccatttcattcagtttactcactctacaggtcactcgaaggctcgtcaatcctttcttcaacttatatagttactttgtgc 34829183  T
Q  110 ttgggtggtttggaacgaacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgatttcattctttatggtgg 209  Q
     | | |||||||||| ||| |||| || ||||||  |||||||||||||||||    ||||||||||| ||| ||||||  |||||| || || ||||||    
T  34829182 cttgttggtttggaatgaatgtaacaacagacttcataataatatccaaaccaacattgaacaactagtagaaaaagttaaatttcactccttttggtgg 34829083  T
Q  210 cttcaagctaacaaagcaaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccattgcttt 300  Q
    ||| ||||||| || || | ||| ||||| | | | ||||||||||||||| |||||||||| |||||| || | ||| |||| |||||||    
T  34829082 cttaaagctaataaggccacttttatgtacgattctcaaagatggtggtcgaaccctttattatgtttgagtatcgattgacctttgcttt 34828992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 20858014 - 20857941
Alignment:
Q  87 caacttatttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaac 160  Q
    ||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||| |||||||||||||||    
T  20858014 caacttatttggttactatgtgtctggttggtttggaatgaacgtaataatagactttataataatatccaaac 20857941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 81 - 266
Target Start/End: Original strand, 35216249 - 35216434
Alignment:
Q  81 tttcttcaacttatttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaaccacagctgaacaactagcag 180  Q
    |||||||| || |||||||||||| |||| |||||||| ||||| |  ||||| |||||| | |||||||||| ||||||||| |  || |||||   ||    
T  35216249 tttcttcagctcatttggttacttggtgtctgggtggtctggaatgctcgtaacaatagaatatttaataatacccaaaccaccgtagaccaacttttag 35216348  T
Q  181 ataaagttcgatttcattctttatggtggcttcaagctaacaaagcaaatttcatgtatggtacccaaagatggtggtcggaccct 266  Q
    | ||||||  ||||||||  |||||||||||| | ||||| || || |||||  |||| ||||| || |||||||||| |||||||    
T  35216349 agaaagttaaatttcatttgttatggtggcttaaggctaagaacgccaattttgtgtacggtactcagagatggtggttggaccct 35216434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 31674722 - 31674643
Alignment:
Q  81 tttcttcaacttatttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaac 160  Q
    |||||||| || ||||||||||| ||||| ||| |||||||||| ||||| || || |||||||||||||||||||||||    
T  31674722 tttcttcagctcatttggttactatgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatatccaaac 31674643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 31921698 - 31921777
Alignment:
Q  81 tttcttcaacttatttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaac 160  Q
    |||||||| || ||||||||||| ||||| ||| |||||||||| ||||| || || |||||||||||||||||||||||    
T  31921698 tttcttcagctcatttggttactatgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatatccaaac 31921777  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 53941096 - 53941032
Alignment:
Q  96 tggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaac 160  Q
    |||||||||||||| ||||| |||||||| |||||||| |||||| | |||||||||||||||||    
T  53941096 tggttactttgtgtatgggtagtttggaatgaacgtaacaatagaatatttaataatatccaaac 53941032  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 29498205 - 29498146
Alignment:
Q  92 tatttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataa 151  Q
    ||||||||| || |||||||||||| | |||| |||||||||||||| ||||||||||||    
T  29498205 tatttggtttctatgtgtttgggtgttatggaccgaacgtaataatatactttttaataa 29498146  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 46249359 - 46249405
Alignment:
Q  235 tgtatggtacccaaagatggtggtcggaccctttattttgtttgggt 281  Q
    |||| ||| |||||||||||||||||||||||||| |||||||||||    
T  46249359 tgtacggttcccaaagatggtggtcggaccctttactttgtttgggt 46249405  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 34828934 - 34828877
Alignment:
Q  347 tacatcttgtacttaggtg-ttcactgccgttgttaatatattccatttttatgtctt 403  Q
    ||||||||||||||||||| |||||| ||| ||||||| |||| ||||||||||||||    
T  34828934 tacatcttgtacttaggtggttcactaccgatgttaatttattacatttttatgtctt 34828877  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 11237586 - 11237519
Alignment:
Q  93 atttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaac 160  Q
    ||||||||| ||||||| | | |||||||||| ||||| || || |||||||||||||||| ||||||    
T  11237586 atttggttattttgtgtgtagatggtttggaatgaacgcaacaacagactttttaataatacccaaac 11237519  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 152
Target Start/End: Complemental strand, 47537060 - 47536989
Alignment:
Q  81 tttcttcaacttatttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataat 152  Q
    |||||||| ||||||||| |  | |||||||||||  | ||||||||||||||||| |||||||| ||||||    
T  47537060 tttcttcagcttatttggctcttgtgtgtttgggttttatggaacgaacgtaataacagacttttcaataat 47536989  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 14306896 - 14306864
Alignment:
Q  249 agatggtggtcggaccctttattttgtttgggt 281  Q
    |||||||||||| ||||||||||||||||||||    
T  14306896 agatggtggtcgaaccctttattttgtttgggt 14306864  T

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Target: chr8 (Bit Score: 116; Significance: 8e-59; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 27 - 403
Target Start/End: Complemental strand, 9510642 - 9510264
Alignment:
Q  27 gaccatttcattcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttactttgtgtttgggtggtttggaacg 126  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||| | || || ||||||||||||||||||| |||||| ||| |||||| |||||    
T  9510642 gaccatttcattcagtttactcactctacaagtcactcaaaggctcgtcaatccttccttcaacttatttggttacattgtgtctggttggtttcgaacg 9510543  T
Q  127 aacgtaataatagactttttaataatatccaaaccacagctgaacaactagcagataaagttcgatttcattctttatggtggcttcaagctaacaaagc 226  Q
    ||||||| || | | ||  ||| ||||||||||||||   ||||||||||||||| |||||    ||||| ||||| ||||||||| ||||||| || ||    
T  9510542 aacgtaacaacaaatttcataacaatatccaaaccaccattgaacaactagcagaaaaagtaaagtttcactctttttggtggcttaaagctaataaggc 9510443  T
Q  227 aaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccattgctt-tgact-ctaatttgtatgtttgactc 324  Q
     | |||  || | ||||| || ||||||||||||||||||||||| ||||||||| | ||  |||| || ||| ||  | ||   || ||||  |||||     
T  9510442 cacttttgtgcagggtactcacagatggtggtcggaccctttattatgtttgggtatcgactgacctttacttctgtttccttcattatatgactgact- 9510344  T
Q  325 atattaggggtgacacttttagtacatcttgtacttaggtg-ttcactgccgttgttaatatattccatttttatgtctt 403  Q
     | |||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||| ||||||||||||||    
T  9510343 gttttaggggtgacacttttagtacatcttgtatttaggtgactcactgccgttgttaatatatttcatttttatgtctt 9510264  T

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Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 27 - 404
Target Start/End: Complemental strand, 6244995 - 6244616
Alignment:
Q  27 gaccatttcattcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttactttgtgtttgggtggtttggaacg 126  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||| | || || |||||||||||||||||||||||||| ||| |||||| | | |    
T  6244995 gaccatttcattcagtttactcactctacaggtcacttaaaggctcgtcaatccttccttcaacttatttggttactttgtgtctggttggttt-gtatg 6244897  T
Q  127 aacgtaataatagactt-tttaataatatccaaaccacagctgaacaactagcagataaagttcgatttcattctttatggtggcttcaagctaacaaag 225  Q
    ||||||| || ||| ||   ||| ||||||||||||||    |||||||||||||| |||||    ||||| ||||| || |||||| ||||||| || |    
T  6244896 aacgtaacaacagatttcaataacaatatccaaaccaccatcgaacaactagcagaaaaagtgaagtttcactctttttgatggcttaaagctaataagg 6244797  T
Q  226 caaatttcatgtatggtacccaaagatggtggtcggaccctttattttgtttgggtttagatcgaccattgctt---tgactctaatttgtatgtttgac 322  Q
    | | |||  |||| ||||| || ||||||||||| ||||||||||| ||||||||| | ||  |||| ||||||   |  | || | |||||||  ||||    
T  6244796 ctacttttgtgtacggtactcacagatggtggtcagaccctttattatgtttgggtatcgactgacctttgcttctgtttccctca-ttgtatgactgac 6244698  T
Q  323 tcatattaggggtgacacttttagtacatcttgtacttaggtg-ttcactgccgttgttaatatattccatttttatgtcttc 404  Q
    | || ||||||||| |||| |||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  6244697 t-attttaggggtggcactcttagtacatcttgtacttaggtgactcactgccgttgttaatatattcaatttttatgtcttc 6244616  T

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Target: chr8; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 3 - 158
Target Start/End: Complemental strand, 25900904 - 25900749
Alignment:
Q  3 ggtgctgacccttttaatattgctgaccatttcattcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttac 102  Q
    |||| |||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||  ||||||||| | ||||||||||||||||| |||||||    
T  25900904 ggtgttgacccctttaatattgatgaccatttcattcagtttactcactctacaggtcacttgaaggctcgtcaatcatttcttcaacttatatggttac 25900805  T
Q  103 tttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaa 158  Q
    ||||||  ||| |||||||||| |||||||| || ||||||  |||||||||||||    
T  25900804 tttgtgcctggttggtttggaatgaacgtaacaacagacttcataataatatccaa 25900749  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 6985098 - 6985165
Alignment:
Q  93 atttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaac 160  Q
    ||||| ||||||||||| ||| |||||||||| ||||| || || |||||||||||||||||||||||    
T  6985098 atttgattactttgtgtgtggatggtttggaatgaacgcaacaacagactttttaataatatccaaac 6985165  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 25192866 - 25192802
Alignment:
Q  96 tggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaac 160  Q
    |||||||||||||| ||||| |||||||| ||||| || |||||| | |||||||||||||||||    
T  25192866 tggttactttgtgtctgggtagtttggaatgaacgcaacaatagaatatttaataatatccaaac 25192802  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 3939007 - 3938928
Alignment:
Q  81 tttcttcaacttatttggttactttgtgtttgggtggtttggaacgaacgtaataatagactttttaataatatccaaac 160  Q
    |||||||| ||||||||||| |||||||||||| | ||||||||   ||| || || | |||||||||||||||||||||    
T  3939007 tttcttcagcttatttggttgctttgtgtttggatcgtttggaatagacgcaacaacatactttttaataatatccaaac 3938928  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 403
Target Start/End: Complemental strand, 25900555 - 25900493
Alignment:
Q  342 tttagtacatcttgtacttaggt-gttcactgccgttgttaatatattccatttttatgtctt 403  Q
    ||||||||||||||||||||||| ||||||| | | | ||||| |||||||||||||||||||    
T  25900555 tttagtacatcttgtacttaggtggttcactactgatattaatttattccatttttatgtctt 25900493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 139
Target Start/End: Complemental strand, 9425026 - 9424992
Alignment:
Q  105 tgtgtttgggtggtttggaacgaacgtaataatag 139  Q
    |||||||||||||| ||||||||||||||||||||    
T  9425026 tgtgtttgggtggtatggaacgaacgtaataatag 9424992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 26658745 - 26658695
Alignment:
Q  102 ctttgtgtttgggtggtttggaacgaacgtaataatagactttttaataat 152  Q
    |||||||||||| | || ||||| ||||||||||||||||| |||||||||    
T  26658745 ctttgtgtttggttagtgtggaatgaacgtaataatagactatttaataat 26658695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 160
Target Start/End: Complemental strand, 7515 - 7381
Alignment:
Q  26 tgaccatttcattcagtttactcactctacaggccactcaaaggctcgttagtcatttcttcaacttatttggttactttgtgtttgggtggtttggaac 125  Q
    ||||||||| |||||||||| | | | |||||| ||| ||||| | |||   || ||| |||| || ||||||||||| ||||| ||| ||||||||||     
T  7515 tgaccattttattcagtttattaattgtacaggtcacacaaagacgcgtagatcctttattcagctcatttggttactatgtgtgtggatggtttggaat 7416  T
Q  126 gaacgtaataatagactttttaataatatccaaac 160  Q
    ||||| || || |||||||||||||||||||||||    
T  7415 gaacgcaacaacagactttttaataatatccaaac 7381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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