View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7481_high_3 (Length: 440)
Name: NF7481_high_3
Description: NF7481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7481_high_3 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 32065061 - 32064622
Alignment:
| Q |
1 |
cagtagtgctggaatctacaaaacgacagatgaacctccccatgttgaaggggtatgtaaaagtttctaatgcagcatttctataaccattttgctgata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| |
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| T |
32065061 |
cagtagtgctggaatctacaaaacgacagatgaacctccccatgttgaaggggtatgtaaaagtttctaatacagtatttctagaaccattttgctgata |
32064962 |
T |
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| Q |
101 |
acaattattgtaatctaaagataaaaatcactggagcaggatgctgtcaaagcagatgctggtcatgttggagttgagaaatacattgaagaaacttttg |
200 |
Q |
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| T |
32064961 |
acaattattgtaatctaaagataaaaatcactggagcaggatgctgtcaaagcagatgctggtcatgttggagttgagaaatacattgaagaaacttttg |
32064862 |
T |
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| Q |
201 |
acagttgggcagtattcaggcctcagtatatgacagggtctggaaacaacaaagactgtgaggagtggttctttgacagtaagtgggaaaattcttaaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32064861 |
acagttgggcagtattcaggcctcagtatatgacagggtctggaaacaacaaagactgtgaggagtggttctttgacagtaagtgggaaaattcttaaag |
32064762 |
T |
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| Q |
301 |
caagctttattttaaaactctaatccacatgaagcnnnnnnnnactctgaaatttttatgctaatttagaacttctaaaagaaatgtatattgccatttg |
400 |
Q |
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|||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32064761 |
caagctttattttaaacctctaatccatatgaagcttttttttactctgaaatttttatgctaatttagaacttctaaaagaaatgtatattgccatttg |
32064662 |
T |
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| Q |
401 |
tagggattgttcgggacagacctgtgctaattcctggttc |
440 |
Q |
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| T |
32064661 |
tagggattgttcgggacagacctgtgctaattcctggttc |
32064622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 51281217 - 51281125
Alignment:
| Q |
1 |
cagtagtgctggaatctacaaaacgacagatgaacctccccatgttgaaggggtatgtaaaa-gtttctaatgcagcatttctataaccattt |
92 |
Q |
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| T |
51281217 |
cagtagtgctggaatctacaaaatgacagatgaaattccccatgttgaaggggtatgtaaaacgttcctaatacagcatttctaaaaccattt |
51281125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 51281106 - 51281062
Alignment:
| Q |
155 |
gatgctggtcatgttggagttgagaaatacattgaagaaactttt |
199 |
Q |
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| T |
51281106 |
gatgttggtcatgttggagttgagaaatgcgtcgaagaaactttt |
51281062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 24917744 - 24917798
Alignment:
| Q |
261 |
aggagtggttctttgacagtaagtgggaaaattcttaaaacaagctttattttaaa |
316 |
Q |
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| T |
24917744 |
aggagtggttctttgatagtaagtgggaaaattc-taaaccaagctttattttaaa |
24917798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 1081170 - 1081224
Alignment:
| Q |
261 |
aggagtggttctttgacagtaagtgggaaaattcttaaaacaagctttattttaaa |
316 |
Q |
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| T |
1081170 |
aggagtggttctttgatagtaagtgggaaaattc-taaaccaaattttattttaaa |
1081224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 7744795 - 7744849
Alignment:
| Q |
261 |
aggagtggttctttgacagtaagtgggaaaattcttaaaacaagctttattttaaa |
316 |
Q |
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| T |
7744795 |
aggagtggttctctgatagtaagtgggaaaattc-taaaccaagctttattttaaa |
7744849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 15339730 - 15339784
Alignment:
| Q |
261 |
aggagtggttctttgacagtaagtgggaaaattcttaaaacaagctttattttaaa |
316 |
Q |
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| T |
15339730 |
aggagtggttctttgatagtaagtgggaaaattc-taaaccaaactttattttaaa |
15339784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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