View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7481_low_1 (Length: 649)

Name: NF7481_low_1
Description: NF7481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7481_low_1
NF7481_low_1
[»] chr2 (24 HSPs)
chr2 (1-630)||(30383961-30384590)
chr2 (1-376)||(30394648-30395024)
chr2 (424-630)||(30394090-30394296)
chr2 (424-630)||(8380009-8380215)
chr2 (1-277)||(30424721-30424997)
chr2 (470-630)||(30475255-30475415)
chr2 (488-630)||(30424133-30424275)
chr2 (470-630)||(30436384-30436544)
chr2 (470-630)||(30468126-30468286)
chr2 (5-268)||(30483752-30484015)
chr2 (488-630)||(30430166-30430308)
chr2 (470-630)||(30482858-30483018)
chr2 (1-279)||(30468818-30469096)
chr2 (1-279)||(30437007-30437285)
chr2 (424-626)||(23784191-23784393)
chr2 (1-161)||(8379589-8379749)
chr2 (6-317)||(30475742-30476053)
chr2 (424-615)||(23767697-23767888)
chr2 (1-277)||(30430754-30431030)
chr2 (26-267)||(23768032-23768273)
chr2 (6-267)||(23783778-23784039)
chr2 (424-615)||(23796866-23797057)
chr2 (6-79)||(30403910-30403983)
chr2 (469-533)||(30403371-30403435)
[»] chr5 (2 HSPs)
chr5 (469-629)||(41628321-41628481)
chr5 (1-351)||(41627817-41628167)
[»] chr8 (5 HSPs)
chr8 (491-614)||(15846083-15846206)
chr8 (491-614)||(15860272-15860395)
chr8 (492-614)||(15852912-15853034)
chr8 (6-123)||(15852326-15852443)
chr8 (6-74)||(15859313-15859381)
[»] chr4 (1 HSPs)
chr4 (488-533)||(11018087-11018132)


Alignment Details
Target: chr2 (Bit Score: 578; Significance: 0; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 1 - 630
Target Start/End: Complemental strand, 30384590 - 30383961
Alignment:
Q  1 gtaacacttcctccctcgcacgtgtttgccaatcagggtacctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaa 100  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  30384590 gtaacacttcctcccttgcacgggtttgccaatcagggtacctactcaataatatcattgtccaaacaagcaaaaccgaagtagtctcttgacctgcaaa 30384491  T
Q  101 gtggaacaacttgcattcctcgactacatcatcaagactcattcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactcaagaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30384490 gtggaacaacttgcattcctcgactacatcatcaagactcattcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactcaagaaga 30384391  T
Q  201 atgctcaataagtcattcctactgggctcacctgcctttaatgctttctccctcttgttaatcatatctttaagcgaagaggttatttctttgtcgattt 300  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30384390 atgctcaataagtcattcctagtgggctcacctgcctttaatgctttttccctcttgttaatcatatctttaagcgaagaggttatttctttgtcgattt 30384291  T
Q  301 tattcatccttctatggacaattgtaggtaaaaacctacaaacaaaaatgttgaaataacgacagaaattagagaccggagaattgttatacttagtaat 400  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  30384290 tattcatctttctatggacaattgtaggcaaaaacctacaaacaaaaatgttgaaataatgacggaaattagagaccggagaattgttatacttagtaat 30384191  T
Q  401 aaaagaaaggaagtccagagttctcttacatccataaagggatgatagatttcatgacaactttcactataagttcagcttgctctctttgaagttgaaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  30384190 aaaagaaaggaagtccagagttctcttacatccataaagggatgatagatttcgttacaactttcactataagttcagcttgctctctttgaagttgaaa 30384091  T
Q  501 tattctttttccttcttcataactacttccaaatgcggttcgagaaatagcatcacttgccaaattttgcagggaaggccatatatctatttcacatgat 600  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30384090 tattctttttccttcttcatagctacttccaaatgcggttcgagaaatagcatcacttgccaaattttgcagggaaggccatatatctatttcacatgat 30383991  T
Q  601 ccatctgaagacaacattttctcccatttg 630  Q
    ||||||||||||||||||||||||||||||    
T  30383990 ccatctgaagacaacattttctcccatttg 30383961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 30395024 - 30394648
Alignment:
Q  1 gtaacacttcctccctcgcacgtgtttgccaatcagggtacctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaa 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | ||| ||||||||    
T  30395024 gtaacacttcctccctagcacgtgtttgccaatcagggtacctactcaacaatatcattgtccaaacaagcaaaaccgaagtagtttcttgccctgcaaa 30394925  T
Q  101 gtggaacaacttgcattcctcgactacatcatcaagactcattcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactcaagaaga 200  Q
     |||||||||||||||||||||||||||| ||||||||||||||| |||  ||| ||||| |  || |  |||||||||||  ||||||| |||||||||    
T  30394924 atggaacaacttgcattcctcgactacatgatcaagactcattccaacactcttattgttgttgttattttcaatttccttatgatttgattcaagaaga 30394825  T
Q  201 atgctcaataagtcattcctactgggctcacctgcctttaatgctttctccctcttgttaatcatatctttaagcgaagaggttatttctttgtcgattt 300  Q
    || ||||||||||||||| || |||  ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30394824 atactcaataagtcattcttagtggattcaccagcctttaattctttctccctcttgttaatcatatctttaagcgaagaggttatttctttgtcaattt 30394725  T
Q  301 tattcatccttctatggacaattgtaggtaaaaacctacaaac-aaaaatgttgaaataacgacagaaattagagac 376  Q
     ||||||| | ||||| |||| | |||| | |||||||| ||| |||||||||| |||||  ||| |||||||||||    
T  30394724 cattcatcttcctatgcacaaatataggcagaaacctacgaacaaaaaatgttgcaataatcacataaattagagac 30394648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 424 - 630
Target Start/End: Complemental strand, 30394296 - 30394090
Alignment:
Q  424 tcttacatccataaagggatgatagatttcatgacaactttcactataagttcagcttgctctctttgaagttgaaatattctttttccttcttcataac 523  Q
    ||||||||||||||||||||  |||||||||| |||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30394296 tcttacatccataaagggattgtagatttcataacaactgttgttataagttcagcttgctctctttgaagttgaaatattctttttccttcttcataac 30394197  T
Q  524 tacttccaaatgcggttcgagaaatagcatcacttgccaaattttgcagggaaggccatatatctatttcacatgatccatctgaagacaacattttctc 623  Q
    |||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||| |||    
T  30394196 tacttccaaacgcagttcgagaaatagcatcacttgccaaattctgcagggaaggccatacgtctatttcacatgatccatctgaagacaacatttcctc 30394097  T
Q  624 ccatttg 630  Q
    |||||||    
T  30394096 ccatttg 30394090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 424 - 630
Target Start/End: Original strand, 8380009 - 8380215
Alignment:
Q  424 tcttacatccataaagggatgatagatttcatgacaactttcactataagttcagcttgctctctttgaagttgaaatattctttttccttcttcataac 523  Q
    |||||| ||||||||||||| | ||||||||  | |  |||||  | ||||||| |||||||||||||||| | ||||||||||||||||||||| ||||    
T  8380009 tcttacctccataaagggattaaagatttcactagatttttcataacaagttcaccttgctctctttgaagatcaaatattctttttccttcttcgtaac 8380108  T
Q  524 tacttccaaatgcggttcgagaaatagcatcacttgccaaattttgcagggaaggccatatatctatttcacatgatccatctgaagacaacattttctc 623  Q
    |||||||||||||| ||||||||||| ||||||||| |||||| || |||||||||||||| |||||||||| |||||||||||| |||||| ||  |||    
T  8380109 tacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgtagggaaggccatatgtctatttcacctgatccatctgatgacaacgttgactc 8380208  T
Q  624 ccatttg 630  Q
    |||||||    
T  8380209 ccatttg 8380215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 30424997 - 30424721
Alignment:
Q  1 gtaacacttcctccctcgcacgtgtttgccaatcagggtacctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaa 100  Q
    |||| ||||| ||||| ||||||  |||||||||||||||||||||||| || | ||||||||||||||||||||| ||||| |||| ||| ||||||||    
T  30424997 gtaatacttcttcccttgcacgttcttgccaatcagggtacctactcaacaacaccattgtccaaacaagcaaaacagaagtggtctcttggcctgcaaa 30424898  T
Q  101 gtggaacaacttgcattcctcgactacatcatcaagactcattcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactcaagaaga 200  Q
    || ||| | |||||||||||| | ||||||||||||||||||||| |||| ||| |||||  | | ||| || ||||| ||| |||||||||| | |||     
T  30424897 gtagaagagcttgcattcctctattacatcatcaagactcattccaacattcttattgttgccgtgttcttccatttctttgtgatttgactctaaaagt 30424798  T
Q  201 atgctcaataagtcattcctactgggctcacctgcctttaatgctttctccctcttgttaatcatatctttaagcga 277  Q
    || |  |||||||||| | || |||  ||||||||||||| |||| | || |||||||||||||||||| |||||||    
T  30424797 atacctaataagtcatccttagtggcttcacctgcctttagtgctctttctctcttgttaatcatatctgtaagcga 30424721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 470 - 630
Target Start/End: Complemental strand, 30475415 - 30475255
Alignment:
Q  470 taagttcagcttgctctctttgaagttgaaatattctttttccttcttcataactacttccaaatgcggttcgagaaatagcatcacttgccaaattttg 569  Q
    ||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| ||||||| |||||||||||    
T  30475415 taagttcagcttgctcgatttgaagttgaaatattctttttccctcttcataactacttccaaatgctgttctagaaataacatcactcgccaaattttg 30475316  T
Q  570 cagggaaggccatatatctatttcacatgatccatctgaagacaacattttctcccatttg 630  Q
     ||| ||||||| | ||| | |||||||||||||||||| ||||||||| |||||||||||    
T  30475315 aaggaaaggccaaacatccaattcacatgatccatctgatgacaacattctctcccatttg 30475255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 488 - 630
Target Start/End: Complemental strand, 30424275 - 30424133
Alignment:
Q  488 tttgaagttgaaatattctttttccttcttcataactacttccaaatgcggttcgagaaatagcatcacttgccaaattttgcagggaaggccatatatc 587  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||| ||||||| ||||||||||| ||| |||||||||  ||    
T  30424275 tttgaagttgaaatattctttttccctcttcataactacttccaaatgcagctcgagaaataacatcactcgccaaattttgaaggaaaggccatacgtc 30424176  T
Q  588 tatttcacatgatccatctgaagacaacattttctcccatttg 630  Q
     |||||||||||||||||||||| |||||||||||||||||||    
T  30424175 catttcacatgatccatctgaagccaacattttctcccatttg 30424133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 470 - 630
Target Start/End: Complemental strand, 30436544 - 30436384
Alignment:
Q  470 taagttcagcttgctctctttgaagttgaaatattctttttccttcttcataactacttccaaatgcggttcgagaaatagcatcacttgccaaattttg 569  Q
    ||||||||||||| ||  ||||||||||||||||||||||||| |||||||||||||||||||| || | ||||||||||  |||||| |||||||||||    
T  30436544 taagttcagcttgttcggtttgaagttgaaatattctttttccctcttcataactacttccaaacgctgctcgagaaataagatcactggccaaattttg 30436445  T
Q  570 cagggaaggccatatatctatttcacatgatccatctgaagacaacattttctcccatttg 630  Q
     ||| |||||||||  || |||||||||||||||||||| |||||||||||||||||||||    
T  30436444 aaggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttg 30436384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 470 - 630
Target Start/End: Complemental strand, 30468286 - 30468126
Alignment:
Q  470 taagttcagcttgctctctttgaagttgaaatattctttttccttcttcataactacttccaaatgcggttcgagaaatagcatcacttgccaaattttg 569  Q
    ||||||||||||| ||  ||||||||||||||||||||||||| |||||||||||||||||||| || | |||||||||| ||||||| || ||||||||    
T  30468286 taagttcagcttgttcggtttgaagttgaaatattctttttccctcttcataactacttccaaacgctgctcgagaaataacatcactggcaaaattttg 30468187  T
Q  570 cagggaaggccatatatctatttcacatgatccatctgaagacaacattttctcccatttg 630  Q
     ||| |||||||||  || |||||||||||||||||||| |||||||||||||||||||||    
T  30468186 aaggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttg 30468126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 5 - 268
Target Start/End: Complemental strand, 30484015 - 30483752
Alignment:
Q  5 cacttcctccctcgcacgtgtttgccaatcagggtacctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaagtgg 104  Q
    ||||||||| || ||||||| |||||||| ||||| ||||||||||||||  |||||||||||||||||||||||||| || | ||  ||||||| || |    
T  30484015 cacttcctctcttgcacgtgcttgccaattagggtgcctactcaataatacaattgtccaaacaagcaaaactgaagtggtttcttcccctgcaaggtag 30483916  T
Q  105 aacaacttgcattcctcgactacatcatcaagactcattcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactcaagaagaatgc 204  Q
    || | ||||||||||| || ||||||||||||| ||||||| |||| ||| ||||| |  || || | |||||||||| ||||||||||||||||||| |    
T  30483915 aatagcttgcattccttgattacatcatcaagattcattccaacattcttattgttgttgttatctttaatttccttgtgatttgactcaagaagaatac 30483816  T
Q  205 tcaataagtcattcctactgggctcacctgcctttaatgctttctccctcttgttaatcatatc 268  Q
      |||||||||||| || |||  ||||||||||||| | || | || ||||||||||| |||||    
T  30483815 ctaataagtcattcttagtggcttcacctgcctttatttctctttctctcttgttaataatatc 30483752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 488 - 630
Target Start/End: Complemental strand, 30430308 - 30430166
Alignment:
Q  488 tttgaagttgaaatattctttttccttcttcataactacttccaaatgcggttcgagaaatagcatcacttgccaaattttgcagggaaggccatatatc 587  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||| |||| ||||| |||||||| ||| |||||||||  ||    
T  30430308 tttgaagttgaaatattctttttccctcttcataactacttccaaatgcagctcgagaaataacatctcttgctaaattttgaaggaaaggccatacttc 30430209  T
Q  588 tatttcacatgatccatctgaagacaacattttctcccatttg 630  Q
     |||||||||||||||||||||| |||||||||||||||||||    
T  30430208 catttcacatgatccatctgaagccaacattttctcccatttg 30430166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 470 - 630
Target Start/End: Complemental strand, 30483018 - 30482858
Alignment:
Q  470 taagttcagcttgctctctttgaagttgaaatattctttttccttcttcataactacttccaaatgcggttcgagaaatagcatcacttgccaaattttg 569  Q
    ||||||||||||||||  ||||||||||||||||| || |||||||||||||||||||||||||||| ||||||| |||| ||||||| |||||||||||    
T  30483018 taagttcagcttgctccttttgaagttgaaatatttttattccttcttcataactacttccaaatgctgttcgagcaataacatcactagccaaattttg 30482919  T
Q  570 cagggaaggccatatatctatttcacatgatccatctgaagacaacattttctcccatttg 630  Q
     | ||||||||||| ||| |||||||||||||||||| | || ||||||  ||||||||||    
T  30482918 aatggaaggccatacatcaatttcacatgatccatctaatgataacattccctcccatttg 30482858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 30469096 - 30468818
Alignment:
Q  1 gtaacacttcctccctcgcacgtgtttgccaatcagggtacctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaa 100  Q
    |||| ||||| ||||| ||||| | ||||||||| ||||||||||||||||| | ||||||||||||||||||||| ||||| |||| ||| ||||||||    
T  30469096 gtaatacttcttcccttgcacgcgcttgccaatcggggtacctactcaataacaccattgtccaaacaagcaaaacagaagtggtctcttggcctgcaaa 30468997  T
Q  101 gtggaacaacttgcattcctcgactacatcatcaagactcattcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactcaagaaga 200  Q
    || ||| | |||||||||||| |  |||||||||||||||||||| |||||||| |||||  ||| ||| || ||||| ||| |||||||||| | |||     
T  30468996 gtagaatagcttgcattcctctatcacatcatcaagactcattccgacatccttattgttgccatgttcttccatttctttgtgatttgactctaaaagt 30468897  T
Q  201 atgctcaataagtcattcctactgggctcacctgcctttaatgctttctccctcttgttaatcatatctttaagcgaag 279  Q
    || |  || || |||| | || | |  ||||||||||||| |||| | || || ||||||||||||||| |||||||||    
T  30468896 atacctaacaaatcatccttagttgcttcacctgcctttagtgctctttctctgttgttaatcatatctgtaagcgaag 30468818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 30437285 - 30437007
Alignment:
Q  1 gtaacacttcctccctcgcacgtgtttgccaatcagggtacctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaa 100  Q
    |||| ||||||||||| ||||||| |||||||||||||||||||||||| || |  |||||||||||||||||||| ||||| |||| |  |||||||||    
T  30437285 gtaatacttcctcccttgcacgtgcttgccaatcagggtacctactcaacaacactattgtccaaacaagcaaaacagaagttgtctctgcacctgcaaa 30437186  T
Q  101 gtggaacaacttgcattcctcgactacatcatcaagactcattcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactcaagaaga 200  Q
    || ||| | |||||||||||| | |||||| |||||||||||||| |||| ||| ||||| |||| ||| || ||||| ||| |||||||||| | |||     
T  30437185 gtagaatagcttgcattcctctattacatcgtcaagactcattccaacattcttattgttgtcatgttcttccatttctttgtgatttgactctaaaagt 30437086  T
Q  201 atgctcaataagtcattcctactgggctcacctgcctttaatgctttctccctcttgttaatcatatctttaagcgaag 279  Q
    || |  || || |||| | |  | |  ||||||||| ||| |||| |||| ||| |||||||||||||| |||||||||    
T  30437085 atacctaacaaatcatcctttgttgcttcacctgccattagtgctctctctctcgtgttaatcatatctgtaagcgaag 30437007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 424 - 626
Target Start/End: Original strand, 23784191 - 23784393
Alignment:
Q  424 tcttacatccataaagggatgatagatttcatgacaactttcactataagttcagcttgctctctttgaagttgaaatattctttttccttcttcataac 523  Q
    |||||| ||||||||||||| | ||||||||| | |  ||||| |||||||||| |||||||| ||||||||||||||| | || |||||||||||||||    
T  23784191 tcttacctccataaagggattaaagatttcattagatttttcattataagttcaccttgctctatttgaagttgaaatacttttcttccttcttcataac 23784290  T
Q  524 tacttccaaatgcggttcgagaaatagcatcacttgccaaattttgcagggaaggccatatatctatttcacatgatccatctgaagacaacattttctc 623  Q
    ||||||||||||  |  ||||  ||| ||||||||| |||  | || |||||||||||||  || |||||||||||||||| ||||||||||||||| ||    
T  23784291 tacttccaaatgacgaacgagcgataacatcacttgtcaagctctgaagggaaggccatacgtccatttcacatgatccatttgaagacaacattttttc 23784390  T
Q  624 cca 626  Q
    |||    
T  23784391 cca 23784393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 8379589 - 8379749
Alignment:
Q  1 gtaacacttcctccctcgcacgtgtttgccaatcagggtacctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaa 100  Q
    |||| ||||||||||| ||||||  |||||||||||||||||||||||| |||||||||||||||||||||| |  ||||||||  | ||| ||||| ||    
T  8379589 gtaatacttcctccctagcacgttcttgccaatcagggtacctactcaacaatatcattgtccaaacaagcatagttgaagtagattcttgccctgccaa 8379688  T
Q  101 gtggaacaacttgcattcctcgactacatcatcaagactcattcccacatccttgttgttt 161  Q
    || ||| |||||||||||| | |||||||| |||||||||||||||| || ||||||||||    
T  8379689 gtagaataacttgcattcccccactacatcttcaagactcattcccatattcttgttgttt 8379749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 6 - 317
Target Start/End: Complemental strand, 30476053 - 30475742
Alignment:
Q  6 acttcctccctcgcacgtgtttgccaatcagggtacctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaagtgga 105  Q
    ||||||||||| ||||| | |||||||||||| ||||||||||| || ||||||| ||||||||||||||| ||||| |||| ||| |||||||||| ||    
T  30476053 acttcctcccttgcacgagcttgccaatcaggatacctactcaacaacatcattgcccaaacaagcaaaacagaagtggtctcttgccctgcaaagtaga 30475954  T
Q  106 acaacttgcattcctcgactacatcatcaagactcattcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactcaagaagaatgct 205  Q
    | | ||||||||| || | |||||| |||||||||||||| |||||||| ||||| || | ||| || ||||| ||| ||||  |||| | ||| || |     
T  30475953 atagcttgcattcttctattacatcgtcaagactcattccgacatccttattgttgtcgtgttcttccatttctttgtgattcaactccaaaagtatacc 30475854  T
Q  206 caataagtcattcctactgggctcacctgcctttaatgctttctccctcttgttaatcatatctttaagcgaagaggttatttctttgtcgattttattc 305  Q
     ||||| |||| | || | |  ||||| ||||||| |||  |||| |||||||||||||||||  |||| ||||   |||||||| |||| ||||  |||    
T  30475853 taataaatcatccttagttgcttcacccgcctttagtgcgatctctctcttgttaatcatatcagtaagtgaagcttttatttctctgtcaatttccttc 30475754  T
Q  306 atccttctatgg 317  Q
    ||||| ||||||    
T  30475753 atcctcctatgg 30475742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 424 - 615
Target Start/End: Complemental strand, 23767888 - 23767697
Alignment:
Q  424 tcttacatccataaagggatgatagatttcatgacaactttcactataagttcagcttgctctctttgaagttgaaatattctttttccttcttcataac 523  Q
    |||||| ||||||||||||| | ||||||||| | |  ||||| |||||||||| |||||||| ||||||||||||||| | || |||||||||||||||    
T  23767888 tcttacctccataaagggattaaagatttcattagatttttcattataagttcaccttgctctatttgaagttgaaatacttttcttccttcttcataac 23767789  T
Q  524 tacttccaaatgcggttcgagaaatagcatcacttgccaaattttgcagggaaggccatatatctatttcacatgatccatctgaagacaac 615  Q
    ||||||||||||  |  ||||  ||| ||||||||| |||  | || |||||||||||||| ||||||||| | ||||||| ||||||||||    
T  23767788 tacttccaaatgacgaacgagcgataacatcacttgtcaagctctgaagggaaggccatatgtctatttcagaggatccatttgaagacaac 23767697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 30431030 - 30430754
Alignment:
Q  1 gtaacacttcctccctcgcacgtgtttgccaatcagggtacctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaa 100  Q
    |||| ||||| ||||| ||||||  ||||||||| || ||||||||||| || | ||||||||||||||||||||| ||||| |||| ||| ||||||||    
T  30431030 gtaatacttcttcccttgcacgttcttgccaatctggttacctactcaacaacaccattgtccaaacaagcaaaacagaagtggtctcttgtcctgcaaa 30430931  T
Q  101 gtggaacaacttgcattcctcgactacatcatcaagactcattcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactcaagaaga 200  Q
    || ||| | |||||||||||| | ||||||||||||||||||||| |||| ||| |||||  | | ||| || ||||| ||  |||||||||| | |||     
T  30430930 gtagaagagcttgcattcctctattacatcatcaagactcattccaacattcttattgttgccttgttcttccatttctttttgatttgactctaaaagt 30430831  T
Q  201 atgctcaataagtcattcctactgggctcacctgcctttaatgctttctccctcttgttaatcatatctttaagcga 277  Q
    || |  |||||||||| | || | |  | |||||| |||| |||| | || ||||||||||| |||||| |||||||    
T  30430830 atacctaataagtcatccttagttgctttacctgcttttagtgctctttctctcttgttaattatatctgtaagcga 30430754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 26 - 267
Target Start/End: Complemental strand, 23768273 - 23768032
Alignment:
Q  26 ttgccaatcagggtacctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaagtggaacaacttgcattcctcgact 125  Q
    ||||||||| |||| ||||||||| || | ||| ||||||||||||||| |||||||||||| ||| |||||||  ||||| ||| |||||||| |||||    
T  23768273 ttgccaatctgggtgcctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgcaatatggaataacatgcattccccgact 23768174  T
Q  126 acatcatcaagactcattcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactcaagaagaatgctcaataagtcattcctactgg 225  Q
    || || |||||||||| ||||| || ||||  |||| ||| ||| | |||||| ||| | || ||||| || || |  |  ||||||||||||  | |||    
T  23768173 acttcttcaagactcaatcccatattcttgaagtttccatgttctttaatttctttgtggttcgactctaggaggagacctaataagtcattctcagtgg 23768074  T
Q  226 gctcacctgcctttaatgctttctccctcttgttaatcatat 267  Q
      ||||||||||||| ||||||||||||||||||||| ||||    
T  23768073 cttcacctgcctttattgctttctccctcttgttaattatat 23768032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 6 - 267
Target Start/End: Original strand, 23783778 - 23784039
Alignment:
Q  6 acttcctccctcgcacgtgtttgccaatcagggtacctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaagtgga 105  Q
    ||||||| ||| ||||||  |||||||||||||||||||||||| || | ||| ||||||||||||||| |||||||||||| ||| |||||||  ||||    
T  23783778 acttccttccttgcacgttcttgccaatcagggtacctactcaacaacaccatcgtccaaacaagcaaatctgaagtagtctcttgccctgcaacatgga 23783877  T
Q  106 acaacttgcattcctcgactacatcatcaagactcattcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactcaagaagaatgct 205  Q
    | ||| |||||||| ||||||| || |||||||||| ||||| || ||||  |||| ||| ||| | ||||||  || | || ||||| || || |  |     
T  23783878 ataacctgcattccccgactacttcttcaagactcaatcccatattcttgacgtttccatgttctttaatttctctgtggttcgactctaggaggagacc 23783977  T
Q  206 caataagtcattcctactgggctcacctgcctttaatgctttctccctcttgttaatcatat 267  Q
     ||||||||||||  | |||  ||||||||||| | |||||| |||||||||||||| ||||    
T  23783978 taataagtcattctcagtggcttcacctgccttaattgctttttccctcttgttaattatat 23784039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 424 - 615
Target Start/End: Complemental strand, 23797057 - 23796866
Alignment:
Q  424 tcttacatccataaagggatgatagatttcatgacaactttcactataagttcagcttgctctctttgaagttgaaatattctttttccttcttcataac 523  Q
    |||||| ||||||||||||| | ||||||||| | |  ||||| |||||||||| |||||||| ||||||||||||||| | || |||||||||||||||    
T  23797057 tcttacctccataaagggattaaagatttcattagatttttcattataagttcaccttgctctatttgaagttgaaatacttttcttccttcttcataac 23796958  T
Q  524 tacttccaaatgcggttcgagaaatagcatcacttgccaaattttgcagggaaggccatatatctatttcacatgatccatctgaagacaac 615  Q
    ||||||||||||  |  ||||  ||| ||||||||| |||  | || |||||||||||||| ||||||||| | | ||||  ||||||||||    
T  23796957 tacttccaaatgacgaacgagcgataacatcacttgtcaagctctgaagggaaggccatatgtctatttcagaggctccacttgaagacaac 23796866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 30403983 - 30403910
Alignment:
Q  6 acttcctccctcgcacgtgtttgccaatcagggtacctactcaataatatcattgtccaaacaagcaaaactga 79  Q
    |||||||| || || |||| |||||||||||| || |||||||| |||||||||||||||||||||| ||||||    
T  30403983 acttcctctctagctcgtgcttgccaatcaggatatctactcaacaatatcattgtccaaacaagcagaactga 30403910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 469 - 533
Target Start/End: Complemental strand, 30403435 - 30403371
Alignment:
Q  469 ataagttcagcttgctctctttgaagttgaaatattctttttccttcttcataactacttccaaa 533  Q
    ||||||| |||||| ||| || | |||| ||||||||||| ||||||||||||| | ||||||||    
T  30403435 ataagttgagcttgttcttttagtagttcaaatattctttgtccttcttcataattgcttccaaa 30403371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 7e-57; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 469 - 629
Target Start/End: Original strand, 41628321 - 41628481
Alignment:
Q  469 ataagttcagcttgctctctttgaagttgaaatattctttttccttcttcataactacttccaaatgcggttcgagaaatagcatcacttgccaaatttt 568  Q
    |||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||| ||||  |||||||||||| ||||||| |||||||| |    
T  41628321 ataagttcagcttgctcaatttgaagttgaaatattcttcttccttcttcataactacttccgaatgttgttcgagaaataacatcactcgccaaattct 41628420  T
Q  569 gcagggaaggccatatatctatttcacatgatccatctgaagacaacattttctcccattt 629  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  41628421 gaagggaaggccatatatctatttcacatgatccatctggagacaacatttcctcccattt 41628481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 41627817 - 41628167
Alignment:
Q  1 gtaacacttcctccctcgcacgtgtttgccaatcagggtacctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaa 100  Q
    |||| ||||||||||| || | || |||||| |||||||||||||||||||||| ||||||||||||||| |||  ||||||||||| ||| ||||||||    
T  41627817 gtaatacttcctcccttgcccttgcttgccactcagggtacctactcaataataccattgtccaaacaagtaaagttgaagtagtctcttgccctgcaaa 41627916  T
Q  101 gtggaacaacttgcattcctcgactacatcatcaagactcattcccacatccttgttgttttcattttcgtcaatttccttgcgatttgactcaagaaga 200  Q
    || |||||||||||||||||  | |||||| |||| | |||||||||||| |  ||||||| ||| ||| | |||||||||| | |||| ||| | ||||    
T  41627917 gtagaacaacttgcattcctgaattacatcttcaatattcattcccacattcacgttgtttccatgttctttaatttccttgtggtttgtctctataaga 41628016  T
Q  201 atgctcaataagtcattcctactgggctcacctgcctttaatgctttctccctcttgttaatcatatctttaagcgaagaggttatttctttgtcgattt 300  Q
    || |  ||||| |||||| || |     ||||| ||||||||  |||| |||| ||||| |||||||| ||||| |||||  |||| |||||  | ||||    
T  41628017 atacctaataaatcattcttattttctccaccttcctttaatattttcacccttttgttgatcatatccttaagtgaagattttatatctttcccaattt 41628116  T
Q  301 tattcatccttctatggacaattgtaggtaaaaacctacaaacaaaaatgt 351  Q
     ||| ||||| |||| ||| || ||||||| |||||| |||| ||| ||||    
T  41628117 cattaatcctcctattgaccatagtaggtacaaacctgcaaataaacatgt 41628167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 614
Target Start/End: Original strand, 15846083 - 15846206
Alignment:
Q  491 gaagttgaaatattctttttccttcttcataactacttccaaatgcggttcgagaaatagcatcacttgccaaattttgcagggaaggccatatatctat 590  Q
    |||||||||||||| ||  ||||||| |||| || ||||||||||| |||| ||||||  ||||||  | |||||| || ||| ||||||| | ||| |     
T  15846083 gaagttgaaatatttttgctccttctgcatagctgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacatcaag 15846182  T
Q  591 ttcacatgatccatctgaagacaa 614  Q
     ||||||| ||||||||| |||||    
T  15846183 ctcacatgttccatctgatgacaa 15846206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 614
Target Start/End: Original strand, 15860272 - 15860395
Alignment:
Q  491 gaagttgaaatattctttttccttcttcataactacttccaaatgcggttcgagaaatagcatcacttgccaaattttgcagggaaggccatatatctat 590  Q
    |||||||||||| | || |||||||| | || || ||||||||||| || ||||||||  ||||||  |  ||||| || ||||||||||| | ||| ||    
T  15860272 gaagttgaaatagttttgttccttctgcgtagctgcttccaaatgctgtccgagaaattacatcacaggtaaaattctgaagggaaggccaaacatcaat 15860371  T
Q  591 ttcacatgatccatctgaagacaa 614  Q
     ||||||| ||||||||| |||||    
T  15860372 ctcacatgttccatctgatgacaa 15860395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 492 - 614
Target Start/End: Original strand, 15852912 - 15853034
Alignment:
Q  492 aagttgaaatattctttttccttcttcataactacttccaaatgcggttcgagaaatagcatcacttgccaaattttgcagggaaggccatatatctatt 591  Q
    ||||||||||| | || |||||||| | || || ||||||||||| || ||||||||  ||||||  | |||||| || ||| ||||||| | ||| ||     
T  15852912 aagttgaaatagttttgttccttctgcgtagctgcttccaaatgctgtccgagaaattacatcacacgtcaaattctgaaggaaaggccaaacatcaatc 15853011  T
Q  592 tcacatgatccatctgaagacaa 614  Q
    ||||||| ||||||||| |||||    
T  15853012 tcacatgttccatctgatgacaa 15853034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 15852326 - 15852443
Alignment:
Q  6 acttcctccctcgcacgtgtttgccaatcagggtacctactcaataatatcattgtccaaacaagcaaaactgaagtagtcttttgacctgcaaagtgga 105  Q
    ||||||| ||| ||||||  |||||| ||||| ||||| |  ||||| | |||||||||||| ||||||  |||||| |||| ||| ||||| ||||  |    
T  15852326 acttcctgccttgcacgttcttgccattcaggatacctgcctaataacaccattgtccaaaccagcaaacttgaagtggtctcttgccctgccaagtaaa 15852425  T
Q  106 acaacttgcattcctcga 123  Q
    |||| |||||||| ||||    
T  15852426 acaatttgcattcatcga 15852443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 15859313 - 15859381
Alignment:
Q  6 acttcctccctcgcacgtgtttgccaatcagggtacctactcaataatatcattgtccaaacaagcaaa 74  Q
    ||||||||||| ||||||| |||||| ||||| ||||| |  ||||| | |||||||||||| ||||||    
T  15859313 acttcctcccttgcacgtgcttgccattcaggatacctgcctaataacaccattgtccaaaccagcaaa 15859381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 533
Target Start/End: Complemental strand, 11018132 - 11018087
Alignment:
Q  488 tttgaagttgaaatattctttttccttcttcataactacttccaaa 533  Q
    ||||||||||||| | |||||||||||||||| | |||||||||||    
T  11018132 tttgaagttgaaaaactctttttccttcttcaaagctacttccaaa 11018087  T

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