View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7481_low_10 (Length: 401)

Name: NF7481_low_10
Description: NF7481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7481_low_10
NF7481_low_10
[»] chr2 (18 HSPs)
chr2 (24-382)||(30384569-30384947)
chr2 (256-382)||(30395573-30395699)
chr2 (22-105)||(30395001-30395084)
chr2 (268-382)||(30437406-30437520)
chr2 (268-368)||(30469217-30469317)
chr2 (278-368)||(30425128-30425218)
chr2 (22-109)||(30437262-30437349)
chr2 (284-366)||(23783531-23783613)
chr2 (264-317)||(30484532-30484585)
chr2 (278-382)||(30431161-30431265)
chr2 (278-322)||(30476368-30476412)
chr2 (24-109)||(30469075-30469160)
chr2 (23-107)||(8379527-8379611)
chr2 (23-107)||(30431008-30431092)
chr2 (24-108)||(30476037-30476121)
chr2 (285-366)||(23768470-23768551)
chr2 (23-107)||(30424975-30425059)
chr2 (22-106)||(30483996-30484080)
[»] chr5 (2 HSPs)
chr5 (268-375)||(41627015-41627122)
chr5 (30-106)||(41627756-41627832)
[»] chr8 (1 HSPs)
chr8 (276-327)||(15844625-15844676)


Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 24 - 382
Target Start/End: Original strand, 30384569 - 30384947
Alignment:
Q  24 cgtgcgagggaggaagtgttacatgtctttggcaacagaaaaccagattttgatgggctaaataacctaaagatcgtaagtattgttgtat--------- 114  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||             
T  30384569 cgtgcaagggaggaagtgttacatgtctttggcaacagaaaaccagattttgatgggctaaataacctaaagatcgtaagtattgttttattatcttcac 30384668  T
Q  115 -----------gagttgcattttcgtagaattttaatcaacagttgcatcttttgtccggaaatactaacactaatcttgtattcagtataagcctcaag 203  Q
               ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  30384669 actcatgatatgagtttcattttcgtagaattttaatcaagagttgcatcttttgtccggaaattctaacactaatcttgtattcactataagcctcaag 30384768  T
Q  204 acaaactggttttgttgtttatcgagactattttgttgcttggccttaacatgtaacattaatctttttgtgataggtcaccatgattttgtatgaggtt 303  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30384769 acaaactggttttgttgtttatcgagacttttttgttgcttggccttaacatgtaacattaatctttttgtgataggtcaccatgattttgtatgaggtt 30384868  T
Q  304 cttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaaatctaacactacctg 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30384869 cttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaaatctaacactacctg 30384947  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 256 - 382
Target Start/End: Original strand, 30395573 - 30395699
Alignment:
Q  256 gtaacattaatctttttgtgataggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatg 355  Q
    ||||||| ||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||| ||||||||| |||||||     
T  30395573 gtaacataaatctttttgtaacaggtcaccatgattttgtatgaggttcttagattataccctccagtaatgggacttgctagaaatgttgtgaaagata 30395672  T
Q  356 tgaaacttggaaatctaacactacctg 382  Q
    ||||||||||||| || ||| ||||||    
T  30395673 tgaaacttggaaacctgacattacctg 30395699  T

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Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 30395001 - 30395084
Alignment:
Q  22 cacgtgcgagggaggaagtgttacatgtctttggcaacagaaaaccagattttgatgggctaaataacctaaagatcgtaagta 105  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  30395001 cacgtgctagggaggaagtgttacatgtctttggcaacaaaaaaccagattttgatgggctaaataacctaaagattgtaagta 30395084  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 268 - 382
Target Start/End: Original strand, 30437406 - 30437520
Alignment:
Q  268 tttttgtgataggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaa 367  Q
    |||||| || ||||||| ||||||||||| |||||||||||||||||||| || ||||| |  |||||||||| |||| | |||||||||||||||||||    
T  30437406 tttttgagacaggtcacgatgattttgtacgaggttcttaggttatacccaccagtaatcgaacttgctcgaagtgttcacaaagatgtgaaacttggaa 30437505  T
Q  368 atctaacactacctg 382  Q
    | |||||| ||||||    
T  30437506 acctaacattacctg 30437520  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 268 - 368
Target Start/End: Original strand, 30469217 - 30469317
Alignment:
Q  268 tttttgtgataggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaa 367  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||| || ||||| |  ||||||||||  ||| | |||||||| ||||||||||    
T  30469217 tttttgagacaggtcaccatgattttgtatgaggttcttaggttatacccaccagtaatcgcacttgctcgaagagttcacaaagatgttaaacttggaa 30469316  T
Q  368 a 368  Q
    |    
T  30469317 a 30469317  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 278 - 368
Target Start/End: Original strand, 30425128 - 30425218
Alignment:
Q  278 aggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaaa 368  Q
    ||||||| ||||||||||| |||||||||||||||||||| || | ||| |  |||||||||| |||| | |||||||||| |||||||||    
T  30425128 aggtcactatgattttgtacgaggttcttaggttatacccaccagcaatcgcgcttgctcgaagtgttcacaaagatgtgatacttggaaa 30425218  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 30437262 - 30437349
Alignment:
Q  22 cacgtgcgagggaggaagtgttacatgtctttggcaacagaaaaccagattttgatgggctaaataacctaaagatcgtaagtattgt 109  Q
    ||||||| ||||||||||| ||||| || ||||||||||  ||||| |||||||||||||||| | | || ||||| |||||||||||    
T  30437262 cacgtgcaagggaggaagtattacaagtatttggcaacaataaacccgattttgatgggctaagtcatcttaagattgtaagtattgt 30437349  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 366
Target Start/End: Complemental strand, 23783613 - 23783531
Alignment:
Q  284 ccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttgga 366  Q
    |||||||||||||||||||| | ||||| |||||||| ||||  ||| |||||||||| |||||||| ||| | |||||||||    
T  23783613 ccatgattttgtatgaggttttgaggttgtaccctcctgtaaccggcgttgctcgaaaagttgagaatgatataaaacttgga 23783531  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 30484532 - 30484585
Alignment:
Q  264 aatctttttgtgataggtcaccatgattttgtatgaggttcttaggttataccc 317  Q
    ||||||||||||| || | ||||||||||||||||||||||| |||||||||||    
T  30484532 aatctttttgtgacagatgaccatgattttgtatgaggttctaaggttataccc 30484585  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 278 - 382
Target Start/End: Original strand, 30431161 - 30431265
Alignment:
Q  278 aggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaaatctaacact 377  Q
    ||||||| ||||||||||| |||||||||||||||||||| || | ||| |  ||| |||||| || | | |||||| ||| ||||||||| |||||| |    
T  30431161 aggtcactatgattttgtacgaggttcttaggttatacccaccagaaatcgcgcttactcgaagtgatcacaaagatatgacacttggaaacctaacatt 30431260  T
Q  378 acctg 382  Q
    |||||    
T  30431261 acctg 30431265  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 278 - 322
Target Start/End: Original strand, 30476368 - 30476412
Alignment:
Q  278 aggtcaccatgattttgtatgaggttcttaggttataccctcccg 322  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||    
T  30476368 aggtcaccatgattttgtatgaggttcttagattatacccacccg 30476412  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 30469075 - 30469160
Alignment:
Q  24 cgtgcgagggaggaagtgttacatgtctttggcaacagaaaaccagattttgatgggctaaataacctaaagatcgtaagtattgt 109  Q
    ||||| ||||| ||||| ||||| |||||||||||||  ||||| |||||||| ||||||| | | || ||||| |||||||||||    
T  30469075 cgtgcaagggaagaagtattacaggtctttggcaacaataaacctgattttgacgggctaagtcatcttaagattgtaagtattgt 30469160  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 8379611 - 8379527
Alignment:
Q  23 acgtgcgagggaggaagtgttacatgtctttggcaacagaaaaccagattttgatgggctaaataacctaaagatcgtaagtatt 107  Q
    |||||| ||||||||||| |||||  | |||||||||| ||||||||| | ||| || |||||||| || ||||| |||||||||    
T  8379611 acgtgctagggaggaagtattacaaatatttggcaacaaaaaaccagactatgaaggactaaataaacttaagattgtaagtatt 8379527  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 30431008 - 30431092
Alignment:
Q  23 acgtgcgagggaggaagtgttacatgtctttggcaacagaaaaccagattttgatgggctaaataacctaaagatcgtaagtatt 107  Q
    |||||| ||||| ||||| ||||| || ||||||||||  |||||||| ||||| ||||||| | | || |||||||||||||||    
T  30431008 acgtgcaagggaagaagtattacaagtatttggcaacaataaaccagaatttgacgggctaagtcatcttaagatcgtaagtatt 30431092  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 30476037 - 30476121
Alignment:
Q  24 cgtgcgagggaggaagtgttacatgtctttggcaacagaaaaccagattttgatgggctaaataacctaaagatcgtaagtattg 108  Q
    ||||| ||||||||||| || || ||||| ||||| | |||||||||||||||||| |||||  | || ||||| ||||||||||    
T  30476037 cgtgcaagggaggaagtattgcaagtcttcggcaataaaaaaccagattttgatggactaaaccaacttaagattgtaagtattg 30476121  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 366
Target Start/End: Original strand, 23768470 - 23768551
Alignment:
Q  285 catgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttgga 366  Q
    ||||||||||||||||||| | ||||| ||||||||  |||  ||| || ||||||| |||||||| ||| | |||||||||    
T  23768470 catgattttgtatgaggttttgaggttgtaccctcctataaccggcgtttctcgaaaagttgagaatgatataaaacttgga 23768551  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 30424975 - 30425059
Alignment:
Q  23 acgtgcgagggaggaagtgttacatgtctttggcaacagaaaaccagattttgatgggctaaataacctaaagatcgtaagtatt 107  Q
    |||||| ||||| ||||| ||||| || ||||||||||  ||||| || ||||| ||||||| | | || |||||||||||||||    
T  30424975 acgtgcaagggaagaagtattacaagtttttggcaacaataaacctgactttgacgggctaagtcatcttaagatcgtaagtatt 30425059  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 30483996 - 30484080
Alignment:
Q  22 cacgtgcgagggaggaagtgttacatgtctttggcaacagaaaaccagattttgatgggctaaataacctaaagatcgtaagtat 106  Q
    ||||||| || ||||||||| |||| || |||||||||| | ||||||||||||| || |||||  | || ||||| ||||||||    
T  30483996 cacgtgcaagagaggaagtgctacaagtttttggcaacaaacaaccagattttgaaggactaaaccatcttaagattgtaagtat 30484080  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 268 - 375
Target Start/End: Complemental strand, 41627122 - 41627015
Alignment:
Q  268 tttttgtgataggtcaccatgattttgtatgaggttcttaggttataccctcccgtaattggccttgctcgaaatgttgagaaagatgtgaaacttggaa 367  Q
    ||||||| |||||| ||||||||||||||||||||| | || ||||| |||||| ||||||  ||| | ||||| ||||| ||| |||||||||||||||    
T  41627122 tttttgtcataggttaccatgattttgtatgaggttatgagattatatcctcccataattgagctttcgcgaaacgttgaaaaaaatgtgaaacttggaa 41627023  T
Q  368 atctaaca 375  Q
    | ||||||    
T  41627022 acctaaca 41627015  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 41627832 - 41627756
Alignment:
Q  30 agggaggaagtgttacatgtctttggcaacagaaaaccagattttgatgggctaaataacctaaagatcgtaagtat 106  Q
    ||||||||||| |||||  |||||||||||| ||||||  |||||||||||||||||||| | ||||| ||||||||    
T  41627832 agggaggaagtattacaaatctttggcaacaaaaaacctaattttgatgggctaaataacttgaagattgtaagtat 41627756  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 15844676 - 15844625
Alignment:
Q  276 ataggtcaccatgattttgtatgaggttcttaggttataccctcccgtaatt 327  Q
    |||||| |||||||||||||| ||||| || |||||||||||||| ||||||    
T  15844676 ataggttaccatgattttgtacgaggtactaaggttataccctcctgtaatt 15844625  T

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