View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7481_low_11 (Length: 391)
Name: NF7481_low_11
Description: NF7481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7481_low_11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 48484403 - 48484012
Alignment:
| Q |
1 |
catttcttgtacatgatcaggtcttatggtgcatttcagtctcatgttctctttcaaatacatttttgaaatggagaaacttagtttacttttactttat |
100 |
Q |
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| T |
48484403 |
catttcttgtacatgatcaggtcttatggtacatttcagtcttatgttctctttcaaatacatttttgaaatggagaaacttagtttacttttactttat |
48484304 |
T |
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| Q |
101 |
tgcctcagaaaaatatgaaccagtttatgcaaaatggacaacagagagatgtgcgatttgcagatgggtagaagattgggaagataacaagattattata |
200 |
Q |
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| T |
48484303 |
tgcctcagaaaaatatgaaccagtttatgcaaaatggacaacagagagatgtgcgatttgcagatgggtagaagattgggaagataacaagattattata |
48484204 |
T |
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| Q |
201 |
tgtaacaggtgctataatcatcg-tcatgatttccatccccaagttgtaaagttattacagatattttgaaattctctttctgatttacaaaactttaaa |
299 |
Q |
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| T |
48484203 |
tgtaacaggtgctataatcatcgttcatgatttccatccccaagttgtaaagttattacagatattttgaaattctctttctgatttacaaaactttaaa |
48484104 |
T |
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| Q |
300 |
ggatcaaaaatgaattacttcacgtgcatcaagagtgctaagttgcagttcatttgcagatgccaagttgctgttcgccaagagtgctatgg |
391 |
Q |
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| T |
48484103 |
ggatcaaacgtgaattacttcacgtgcatcaagagtgctaagttgcagttcatttgcagatgccaagttgctgttcaccaagagtgctatgg |
48484012 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 210
Target Start/End: Original strand, 10036323 - 10036419
Alignment:
| Q |
114 |
tatgaaccagtttatgcaaaatggacaacagagagatgtgcgatttgcagatgggtagaagattgggaagataacaagattattatatgtaacaggt |
210 |
Q |
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| T |
10036323 |
tatgagccagttcatgcaaaatggacgacagaaagatgtgctatttgtagatggatcgaagactatgaggataacaaaattatcatctgcaacaggt |
10036419 |
T |
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